| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313178
Identifier: 158313178
GI number: 158313178
Start: 1597864
End: 1598733
Strand: Direct
Name: 158313178
Synonym: Franean1_1328
Alternate gene names: NA
Gene position: 1597864-1598733 (Clockwise)
Preceding gene: 158313165
Following gene: 158313179
Centisome position: 17.79
GC content: 68.51
Gene sequence:
>870_bases GTGGCGACTCAGCGGCAGGCACCACCGACCGTGCGCTCCCGCCGGCTGGCCTTCGAGCTGCGCCGACTACGGGACGAGGC TGGCCTGACCCGTGATCAGGTCTCCGAGCAGACCGGGATCAATCCCGCGACGCTGTATCGGCACGAGACCGCGACGGCCC GCTCCCGCCCGCAGCGCCGGACGATGATCGCGTTGCTGAACCTCTACGGCGCCAGCGAGCAGCAACGCGCCGACCTGCTG GCGCTGTCCCGTGAGACCGACGTCCAAGGCTGGCTGCGGCCGTACCACGCGGAGCTGCCCGAGCACTACACCGCCTACAT CAGCTTCGAGGTCGAAGCGCGCACGGTGCGCAACTACGAATCGCTGTTCATCCCCGGACTGCTCCAGACCGAGGACTACG CCCGCGCCGTCATCCGCGGGAACCTGCCGATGGCTAGCGAAAAGGAGGTCGCCACCCGTGTCCAGGCCAGGATGGAACGC CAGGCCCTGCTGGCCGGCACCTCCCCGCTGCAGCTATGGGCGATCATCGACGAGGCCGCGTTGCACCGCGAGGTCGGCGG ACCGGACGTCATGCGGGCCCAGCTCCACCGACTGATCGACGCGGCCCGGGAACCGCACGTCACCATCCAGCTCATCCCCT ACACCGCTGGCGCGCACGCGGGCATGCAGGGGTCGTTCATCATCCTCGACTTCCCGAACCCCGCCGACCCCACGATCATC TACATTGACAGCATGGCCGGCGACCTGTTCCTCGAAGCCGAGGCCGACATCCGCCGGTATAGCCTGCTCTTCGACAACCT GCGCGCGGTCGCCCTCAGCCCCGACGCCTCAACCGCCCTGATCGCCACCCTGATAGCACACGCACAGTGA
Upstream 100 bases:
>100_bases ATGCAAGGTATGCATAGGCAATGGTTGCGGATTAGTGAGGGTGTCGATCCTGGTGTGGACCCTGGTCCGGGCACCCGGAT GGACGGGAGAGGATCAGGCA
Downstream 100 bases:
>100_bases GAGGAGGTGTCTACGGTGCACCAGGTAGACCTTTCCCGGGCCGTCTGGCGGAAGAGCGCGCTCAGTAGCGGCAACGGCGC CTGCGTCGAGGTGGCGTTCC
Product: helix-turn-helix domain-containing protein
Products: NA
Alternate protein names: Xre Family xin-Antitoxin System Antitoxin Component; XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Transcriptional Regulator XRE Family; Transcriptional Regulator; Transcriptional Regulatory Protein; Regulatory Protein; Helix-Turn-Helix Protein
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MATQRQAPPTVRSRRLAFELRRLRDEAGLTRDQVSEQTGINPATLYRHETATARSRPQRRTMIALLNLYGASEQQRADLL ALSRETDVQGWLRPYHAELPEHYTAYISFEVEARTVRNYESLFIPGLLQTEDYARAVIRGNLPMASEKEVATRVQARMER QALLAGTSPLQLWAIIDEAALHREVGGPDVMRAQLHRLIDAAREPHVTIQLIPYTAGAHAGMQGSFIILDFPNPADPTII YIDSMAGDLFLEAEADIRRYSLLFDNLRAVALSPDASTALIATLIAHAQ
Sequences:
>Translated_289_residues MATQRQAPPTVRSRRLAFELRRLRDEAGLTRDQVSEQTGINPATLYRHETATARSRPQRRTMIALLNLYGASEQQRADLL ALSRETDVQGWLRPYHAELPEHYTAYISFEVEARTVRNYESLFIPGLLQTEDYARAVIRGNLPMASEKEVATRVQARMER QALLAGTSPLQLWAIIDEAALHREVGGPDVMRAQLHRLIDAAREPHVTIQLIPYTAGAHAGMQGSFIILDFPNPADPTII YIDSMAGDLFLEAEADIRRYSLLFDNLRAVALSPDASTALIATLIAHAQ >Mature_288_residues ATQRQAPPTVRSRRLAFELRRLRDEAGLTRDQVSEQTGINPATLYRHETATARSRPQRRTMIALLNLYGASEQQRADLLA LSRETDVQGWLRPYHAELPEHYTAYISFEVEARTVRNYESLFIPGLLQTEDYARAVIRGNLPMASEKEVATRVQARMERQ ALLAGTSPLQLWAIIDEAALHREVGGPDVMRAQLHRLIDAAREPHVTIQLIPYTAGAHAGMQGSFIILDFPNPADPTIIY IDSMAGDLFLEAEADIRRYSLLFDNLRAVALSPDASTALIATLIAHAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32349; Mature: 32218
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATQRQAPPTVRSRRLAFELRRLRDEAGLTRDQVSEQTGINPATLYRHETATARSRPQRR CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHEEECCHHHHHCCCHHH TMIALLNLYGASEQQRADLLALSRETDVQGWLRPYHAELPEHYTAYISFEVEARTVRNYE HHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHCHH SLFIPGLLQTEDYARAVIRGNLPMASEKEVATRVQARMERQALLAGTSPLQLWAIIDEAA HHCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LHREVGGPDVMRAQLHRLIDAAREPHVTIQLIPYTAGAHAGMQGSFIILDFPNPADPTII HHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCCEEE YIDSMAGDLFLEAEADIRRYSLLFDNLRAVALSPDASTALIATLIAHAQ EEECCCCCEEEECCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCC >Mature Secondary Structure ATQRQAPPTVRSRRLAFELRRLRDEAGLTRDQVSEQTGINPATLYRHETATARSRPQRR CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHEEECCHHHHHCCCHHH TMIALLNLYGASEQQRADLLALSRETDVQGWLRPYHAELPEHYTAYISFEVEARTVRNYE HHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHCHH SLFIPGLLQTEDYARAVIRGNLPMASEKEVATRVQARMERQALLAGTSPLQLWAIIDEAA HHCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LHREVGGPDVMRAQLHRLIDAAREPHVTIQLIPYTAGAHAGMQGSFIILDFPNPADPTII HHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCCEEE YIDSMAGDLFLEAEADIRRYSLLFDNLRAVALSPDASTALIATLIAHAQ EEECCCCCEEEECCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA