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The map label for this gene is lytR [H]

Identifier: 158313100

GI number: 158313100

Start: 1503306

End: 1504844

Strand: Direct

Name: lytR [H]

Synonym: Franean1_1248

Alternate gene names: 158313100

Gene position: 1503306-1504844 (Clockwise)

Preceding gene: 158313099

Following gene: 158313105

Centisome position: 16.74

GC content: 75.44

Gene sequence:

>1539_bases
GTGCAGGGACGTCCGGCGCAGGGCCGCCCGGCGCGGGACCGACCGGCCGCCGGCGAGGAGAACTGGCCGGCGGGAGCCTG
GCCGCGCCACGAGCCCCGCTCGGCTCCCGCGCCGATCCCGCCCACCCGCCGGCTGCCTCCGCCGGGCGCCACCGACGGCG
GGCGGACCTGGCCCGCCCCGAACGACGGGCCCGGCGGGTACCGCGCGCCGGCCGGCCCGGTGCCCGGGTACGGCGGCCCG
CGCGGGCCGTACGACACCCCGGGCGAGGACCTGCCCGCGGAGGAGCCACACCGCCCGGTGAGCGGTGTGCGCCGGACGGT
GACCCTGGTGGCCGCCATCGTCTCGGTGGCCGTCCTGGTCGTCGCCACGAGCGGCTGGGCCGTGCTGCGCCACTACGACG
GCAAGGTGAACCACATCGAGCTCACGTTCTCCGACTCGGCCGCGCGGCCCTCCGCCGCCGGCGGAGGCACCCAGAACATC
CTGCTGGTGGGCTCGGACACCCGCGCGGGCACCGGGGGCGAGTTCGGCCAGACCGAGGGGCAGCGCTCGGACACCACGAT
CCTCGCCCACCTCGACGCCGACGGCTCGACGACCCTGGTGTCCTTCCCCCGCGACCTGTGGGTGCAGATCCCGGGCTACA
CCGGCTCCGACGGCACCCAGCACGACGCGCAGAAGTCCAAGCTCAACGCGGCGTTCGCCTACGGCGGGCCGTCCCTGCTG
GTCCGGACCATCGAGACGCTCACCAACATCCGGATCGACCACTACCTCGAGATCGACTTCCTGGGCTTCCAGGCGATGAC
GGACGCGCTCGGCGGCGTCACCGTCTGCGTGAAGGAGCTGACGCCCGAGCTCAAGGCGCAGGGCTTCGACAACCTCAACG
ACCGGTACTCCGGCTGGCACGGCCAGGTCGGCAACAACACGCTCACCGGTGAGCAGGCGCTGGCCTTCGTCCGGCAGCGT
TACGGCCTGCCCGGCAGCGACCTCGACCGCATCCACCGCCAGCAGCAGTTCCTCGGCGCGGTGTTCCGCGAGGTCGCCTC
CACCGGGACCCTGCTCAACCCGCGCAAGCTGCTCGACGTCGTGGACGCGGCCACCTCCGCGCTGACCCTGGACGACCACA
CCTCGCTCACTGATCTGCGCCTGCTCGCCGTCCGGATGCAGGGCATCAGCACCGGTGGGGTCACCTTCGCGACCGTCCCG
GCCACGCCGTCACAGGCCGGCGGGCAGTCCGTGCTCCTGGCGAAGACCGACGAGCTGACGACGCTGCTCGCCGGGATCGG
CGGCTCCCCGCCGCAGGCCGCCGGGCCCCCCGCGCTCGGCCCCGCCGGCTCGCCGTCCGGCTTGACGGCGGCCTCGGCGG
CCTCGGCGGCCTCCGTGGGTGCTACGGCCGCGTCCGGTGCCGTGCCGGCGTCCGGTACCGGCCACGGTTCGGTGGTCACC
GCGGACCTGCGCGCCACCGGAGGGCGGCCCGCGGGCGGCGCGGTGACCCTGGCCCAGGCCACCCCCGAGCCGTCCGGCGG
GGTGGGCTGCACCTACTGA

Upstream 100 bases:

>100_bases
ATCCGGCCGCCCCGGGTACCCAGGTCAGGGCCAGGGCCGTCCACCGGTTCCCGGACGCCCGCCGCAGGAGCGCCCGCCGC
GGGACAGGCGCGACCGCCCG

Downstream 100 bases:

>100_bases
CGCGGGGAGCCGAACCCTGTCGCGGACGACCCGGGCCCTGCTGTGGGGGACCGGGCCGTGCCGCGGGGGCTGAGTCCTAA
CGTGGGGGAGTCGAGCCCGG

Product: cell envelope-related transcriptional attenuator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MQGRPAQGRPARDRPAAGEENWPAGAWPRHEPRSAPAPIPPTRRLPPPGATDGGRTWPAPNDGPGGYRAPAGPVPGYGGP
RGPYDTPGEDLPAEEPHRPVSGVRRTVTLVAAIVSVAVLVVATSGWAVLRHYDGKVNHIELTFSDSAARPSAAGGGTQNI
LLVGSDTRAGTGGEFGQTEGQRSDTTILAHLDADGSTTLVSFPRDLWVQIPGYTGSDGTQHDAQKSKLNAAFAYGGPSLL
VRTIETLTNIRIDHYLEIDFLGFQAMTDALGGVTVCVKELTPELKAQGFDNLNDRYSGWHGQVGNNTLTGEQALAFVRQR
YGLPGSDLDRIHRQQQFLGAVFREVASTGTLLNPRKLLDVVDAATSALTLDDHTSLTDLRLLAVRMQGISTGGVTFATVP
ATPSQAGGQSVLLAKTDELTTLLAGIGGSPPQAAGPPALGPAGSPSGLTAASAASAASVGATAASGAVPASGTGHGSVVT
ADLRATGGRPAGGAVTLAQATPEPSGGVGCTY

Sequences:

>Translated_512_residues
MQGRPAQGRPARDRPAAGEENWPAGAWPRHEPRSAPAPIPPTRRLPPPGATDGGRTWPAPNDGPGGYRAPAGPVPGYGGP
RGPYDTPGEDLPAEEPHRPVSGVRRTVTLVAAIVSVAVLVVATSGWAVLRHYDGKVNHIELTFSDSAARPSAAGGGTQNI
LLVGSDTRAGTGGEFGQTEGQRSDTTILAHLDADGSTTLVSFPRDLWVQIPGYTGSDGTQHDAQKSKLNAAFAYGGPSLL
VRTIETLTNIRIDHYLEIDFLGFQAMTDALGGVTVCVKELTPELKAQGFDNLNDRYSGWHGQVGNNTLTGEQALAFVRQR
YGLPGSDLDRIHRQQQFLGAVFREVASTGTLLNPRKLLDVVDAATSALTLDDHTSLTDLRLLAVRMQGISTGGVTFATVP
ATPSQAGGQSVLLAKTDELTTLLAGIGGSPPQAAGPPALGPAGSPSGLTAASAASAASVGATAASGAVPASGTGHGSVVT
ADLRATGGRPAGGAVTLAQATPEPSGGVGCTY
>Mature_512_residues
MQGRPAQGRPARDRPAAGEENWPAGAWPRHEPRSAPAPIPPTRRLPPPGATDGGRTWPAPNDGPGGYRAPAGPVPGYGGP
RGPYDTPGEDLPAEEPHRPVSGVRRTVTLVAAIVSVAVLVVATSGWAVLRHYDGKVNHIELTFSDSAARPSAAGGGTQNI
LLVGSDTRAGTGGEFGQTEGQRSDTTILAHLDADGSTTLVSFPRDLWVQIPGYTGSDGTQHDAQKSKLNAAFAYGGPSLL
VRTIETLTNIRIDHYLEIDFLGFQAMTDALGGVTVCVKELTPELKAQGFDNLNDRYSGWHGQVGNNTLTGEQALAFVRQR
YGLPGSDLDRIHRQQQFLGAVFREVASTGTLLNPRKLLDVVDAATSALTLDDHTSLTDLRLLAVRMQGISTGGVTFATVP
ATPSQAGGQSVLLAKTDELTTLLAGIGGSPPQAAGPPALGPAGSPSGLTAASAASAASVGATAASGAVPASGTGHGSVVT
ADLRATGGRPAGGAVTLAQATPEPSGGVGCTY

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 52396; Mature: 52396

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGRPAQGRPARDRPAAGEENWPAGAWPRHEPRSAPAPIPPTRRLPPPGATDGGRTWPAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NDGPGGYRAPAGPVPGYGGPRGPYDTPGEDLPAEEPHRPVSGVRRTVTLVAAIVSVAVLV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VATSGWAVLRHYDGKVNHIELTFSDSAARPSAAGGGTQNILLVGSDTRAGTGGEFGQTEG
HHCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
QRSDTTILAHLDADGSTTLVSFPRDLWVQIPGYTGSDGTQHDAQKSKLNAAFAYGGPSLL
CCCCCEEEEEECCCCCEEEEECCCEEEEECCCCCCCCCCCHHHHHHHCCEEEECCCHHHH
VRTIETLTNIRIDHYLEIDFLGFQAMTDALGGVTVCVKELTPELKAQGFDNLNDRYSGWH
HHHHHHHHHCCEEEEEEEEEECHHHHHHHHCHHHHHHHHHCHHHHHCCCCCCCCCCCCCC
GQVGNNTLTGEQALAFVRQRYGLPGSDLDRIHRQQQFLGAVFREVASTGTLLNPRKLLDV
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
VDAATSALTLDDHTSLTDLRLLAVRMQGISTGGVTFATVPATPSQAGGQSVLLAKTDELT
HHHHHHEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEECHHHH
TLLAGIGGSPPQAAGPPALGPAGSPSGLTAASAASAASVGATAASGAVPASGTGHGSVVT
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
ADLRATGGRPAGGAVTLAQATPEPSGGVGCTY
EEEECCCCCCCCCEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MQGRPAQGRPARDRPAAGEENWPAGAWPRHEPRSAPAPIPPTRRLPPPGATDGGRTWPAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NDGPGGYRAPAGPVPGYGGPRGPYDTPGEDLPAEEPHRPVSGVRRTVTLVAAIVSVAVLV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VATSGWAVLRHYDGKVNHIELTFSDSAARPSAAGGGTQNILLVGSDTRAGTGGEFGQTEG
HHCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
QRSDTTILAHLDADGSTTLVSFPRDLWVQIPGYTGSDGTQHDAQKSKLNAAFAYGGPSLL
CCCCCEEEEEECCCCCEEEEECCCEEEEECCCCCCCCCCCHHHHHHHCCEEEECCCHHHH
VRTIETLTNIRIDHYLEIDFLGFQAMTDALGGVTVCVKELTPELKAQGFDNLNDRYSGWH
HHHHHHHHHCCEEEEEEEEEECHHHHHHHHCHHHHHHHHHCHHHHHCCCCCCCCCCCCCC
GQVGNNTLTGEQALAFVRQRYGLPGSDLDRIHRQQQFLGAVFREVASTGTLLNPRKLLDV
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
VDAATSALTLDDHTSLTDLRLLAVRMQGISTGGVTFATVPATPSQAGGQSVLLAKTDELT
HHHHHHEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEECHHHH
TLLAGIGGSPPQAAGPPALGPAGSPSGLTAASAASAASVGATAASGAVPASGTGHGSVVT
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
ADLRATGGRPAGGAVTLAQATPEPSGGVGCTY
EEEECCCCCCCCCEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]