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The map label for this gene is yfdE [H]

Identifier: 158313099

GI number: 158313099

Start: 1501420

End: 1502343

Strand: Direct

Name: yfdE [H]

Synonym: Franean1_1247

Alternate gene names: 158313099

Gene position: 1501420-1502343 (Clockwise)

Preceding gene: 158313097

Following gene: 158313100

Centisome position: 16.72

GC content: 68.29

Gene sequence:

>924_bases
GTGCGCCGATCTCGATGCCCGGGTCATCAAGGTCGAACGACCGGGCGGCGGGACGACTCCCGTACCTACGGTCCGTTCAT
GGACGGCCGGTCGCTGTACTTCGCGCGGGTGAACCGTGGCAAGCAATCCGTCGTCCTGGATCTCAAGGACACGACGGACC
GTGACCTTCTGTTGCGGATCGTCGACCGGGCCGATGTTCTGGTCGAGAACTTCCGCCCCGGGGTGATGGACCGGCTGGGT
CTCGGCGTCGATGCGCTCGCCGCGCGCAATCCCCGCCTCATATACGTCAGCATCTCCGGCTTCGGGCAAACGGGCCCGTG
GCGGGAGCGGCCGGCATACGACTCCGTCGTGCAGGCGGCCTCGGGCATGGTGTCGATCACCGGATGCCCGGGCGAGGAGC
CCGTCAAACCGGGTGTTCCGATCGCGGACCTGGCCGCCGGTCTCTATGCTTTCGGCGCCATCGGGGCCGCGCTGCAGGGC
CGGAGCACCACCGGCCGCGGAACTCATCTCGATATTGCCATGTTCGACGCGACGGTCTCCCTGCTGGAGGGCGTCGCGCT
GTCATATCTCGCGACCGGCGTCACTCCGCCACGGATCGGAAACGCCCACTACTCCATCGCCCCCTTTGACACGTTCGCGT
GCGCGGGCGGCAGCATCGTGATCTGCGCGGCCAACGACAACCTCTTCGGCCGGCTGTGCGCGGTGGTCGAGAGGCCCGAC
CTCGCCGCCGACCCGAGGTTCCGCACCAACAGCGACCGGCTCCGGGAACGCGAAGCGTTCAAGACGGAGATCGGGGCGAC
CCTGCGCCGGCAGGAGCCGGACCACTGGTTGAAGGCACTGCAGGCCGCGGGCGTTCCCTGTGGTCCGATCAATGATGTTC
CGGCCGCGTCGACTCCGCGCAGACGAGTGCCCGCCGGATGGTGA

Upstream 100 bases:

>100_bases
GGGTAGCGTCCTTCGCCGTGGCGACCACGGCCGGCCCGATGGCGGGACTTCTCATCGTCGATCTCACCCGGGTTTTGGCG
GGTCCGTTCGCGAGGATGAT

Downstream 100 bases:

>100_bases
TCGAGGCCGGCGGCCTCCCGCTGCCAGGTAATCCCATCAGGGCCGCCGGATATCCGGACCCGCTCGAACGTCCCGCGCCC
GCCGCCCGCGCCCGCGCCCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MRRSRCPGHQGRTTGRRDDSRTYGPFMDGRSLYFARVNRGKQSVVLDLKDTTDRDLLLRIVDRADVLVENFRPGVMDRLG
LGVDALAARNPRLIYVSISGFGQTGPWRERPAYDSVVQAASGMVSITGCPGEEPVKPGVPIADLAAGLYAFGAIGAALQG
RSTTGRGTHLDIAMFDATVSLLEGVALSYLATGVTPPRIGNAHYSIAPFDTFACAGGSIVICAANDNLFGRLCAVVERPD
LAADPRFRTNSDRLREREAFKTEIGATLRRQEPDHWLKALQAAGVPCGPINDVPAASTPRRRVPAGW

Sequences:

>Translated_307_residues
MRRSRCPGHQGRTTGRRDDSRTYGPFMDGRSLYFARVNRGKQSVVLDLKDTTDRDLLLRIVDRADVLVENFRPGVMDRLG
LGVDALAARNPRLIYVSISGFGQTGPWRERPAYDSVVQAASGMVSITGCPGEEPVKPGVPIADLAAGLYAFGAIGAALQG
RSTTGRGTHLDIAMFDATVSLLEGVALSYLATGVTPPRIGNAHYSIAPFDTFACAGGSIVICAANDNLFGRLCAVVERPD
LAADPRFRTNSDRLREREAFKTEIGATLRRQEPDHWLKALQAAGVPCGPINDVPAASTPRRRVPAGW
>Mature_307_residues
MRRSRCPGHQGRTTGRRDDSRTYGPFMDGRSLYFARVNRGKQSVVLDLKDTTDRDLLLRIVDRADVLVENFRPGVMDRLG
LGVDALAARNPRLIYVSISGFGQTGPWRERPAYDSVVQAASGMVSITGCPGEEPVKPGVPIADLAAGLYAFGAIGAALQG
RSTTGRGTHLDIAMFDATVSLLEGVALSYLATGVTPPRIGNAHYSIAPFDTFACAGGSIVICAANDNLFGRLCAVVERPD
LAADPRFRTNSDRLREREAFKTEIGATLRRQEPDHWLKALQAAGVPCGPINDVPAASTPRRRVPAGW

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=280, Percent_Identity=37.1428571428571, Blast_Score=212, Evalue=3e-55,
Organism=Homo sapiens, GI300863124, Length=280, Percent_Identity=37.1428571428571, Blast_Score=212, Evalue=3e-55,
Organism=Homo sapiens, GI13376042, Length=280, Percent_Identity=33.2142857142857, Blast_Score=175, Evalue=5e-44,
Organism=Homo sapiens, GI300863126, Length=280, Percent_Identity=29.6428571428571, Blast_Score=149, Evalue=3e-36,
Organism=Homo sapiens, GI266456254, Length=201, Percent_Identity=38.3084577114428, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI42794625, Length=201, Percent_Identity=38.3084577114428, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI266458397, Length=201, Percent_Identity=38.3084577114428, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458393, Length=201, Percent_Identity=38.3084577114428, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458395, Length=88, Percent_Identity=47.7272727272727, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI42822893, Length=88, Percent_Identity=47.7272727272727, Blast_Score=78, Evalue=1e-14,
Organism=Escherichia coli, GI87082093, Length=282, Percent_Identity=47.5177304964539, Blast_Score=285, Evalue=3e-78,
Organism=Escherichia coli, GI1788717, Length=285, Percent_Identity=27.719298245614, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1786222, Length=189, Percent_Identity=29.6296296296296, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI32564160, Length=273, Percent_Identity=28.2051282051282, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=282, Percent_Identity=26.9503546099291, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648431, Length=280, Percent_Identity=37.8571428571429, Blast_Score=196, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24585488, Length=141, Percent_Identity=39.0070921985816, Blast_Score=95, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 33076; Mature: 33076

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRSRCPGHQGRTTGRRDDSRTYGPFMDGRSLYFARVNRGKQSVVLDLKDTTDRDLLLRI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHH
VDRADVLVENFRPGVMDRLGLGVDALAARNPRLIYVSISGFGQTGPWRERPAYDSVVQAA
HHHHHHHHHHCCCCHHHHHCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
SGMVSITGCPGEEPVKPGVPIADLAAGLYAFGAIGAALQGRSTTGRGTHLDIAMFDATVS
CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHH
LLEGVALSYLATGVTPPRIGNAHYSIAPFDTFACAGGSIVICAANDNLFGRLCAVVERPD
HHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHCCCCCEEEEECCCCHHHHHHHHHCCCC
LAADPRFRTNSDRLREREAFKTEIGATLRRQEPDHWLKALQAAGVPCGPINDVPAASTPR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
RRVPAGW
CCCCCCC
>Mature Secondary Structure
MRRSRCPGHQGRTTGRRDDSRTYGPFMDGRSLYFARVNRGKQSVVLDLKDTTDRDLLLRI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHH
VDRADVLVENFRPGVMDRLGLGVDALAARNPRLIYVSISGFGQTGPWRERPAYDSVVQAA
HHHHHHHHHHCCCCHHHHHCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
SGMVSITGCPGEEPVKPGVPIADLAAGLYAFGAIGAALQGRSTTGRGTHLDIAMFDATVS
CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHH
LLEGVALSYLATGVTPPRIGNAHYSIAPFDTFACAGGSIVICAANDNLFGRLCAVVERPD
HHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHCCCCCEEEEECCCCHHHHHHHHHCCCC
LAADPRFRTNSDRLREREAFKTEIGATLRRQEPDHWLKALQAAGVPCGPINDVPAASTPR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
RRVPAGW
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]