Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 158313081

GI number: 158313081

Start: 1470446

End: 1471576

Strand: Direct

Name: yciR [C]

Synonym: Franean1_1229

Alternate gene names: 158313081

Gene position: 1470446-1471576 (Clockwise)

Preceding gene: 158313080

Following gene: 158313082

Centisome position: 16.37

GC content: 75.69

Gene sequence:

>1131_bases
GTGGCCGGCCCAGCGCCGCGGGACCTTCGCCCGACCCGTCGGCCCGGGTCCCGGCCCATCCCGGCGTCTGGAGAGTTCGA
CGTGACCGCGCTCGACCTTGCCCTGGTTCCCGCGCTGTACGCCTCGTTCGACGACGGTTCGCTACGCCTGCACTACCAGC
CGGACGTCGACCTTCGTAACGGCTCCGTCCCGGGGATGCAGGCGCGGCCCCGCTGGGCGCACGCCGAGTTCGGGCTGCTC
GGCCCGGCGGCCTTCATGCGCGTCGCCGAGGCCGCCGGGCTGGTCGGCCAGGTACACCAGTGGGTGCTGCGGATGGCGGT
CACGGAGGCGCGGACCTGGCACCGGATGGCCGTGGGGACCTCCGTCCGCCCGCCGCGGCTGTGGGTGCGCATCGACGGCC
GTCATCTCGCCCGCCCGGAGTTCCTCGCCGAGGTGGAGCGGCTGGTGCTGGGGCGGTCGCTGCCGGCGGGCGCCGTCGGC
CTGCAGTTCACCGAGGACACGCTGGCGTTCGCGCCGCCCGCGCTGCCCCGCCTGCTGGCGCGGCTGCGGGACCTCGGCGT
CGCGGTGGGCGTCGACGCGTTCGGCACGTGGTACGGCTCGTTGTCCACCCTCGACGTGCTCCCGCTGGACCTGGTGCGGA
TCGACGGGCAGTTCCTGCGGGCGACGATCCGCGACATGGAGGGCGAGGCTGCCTTCGCCTCCCTGGTGGGCGTGGCGCAT
CGGCGGCGCATGGTCGTCGTCGCCGAGGACGTCGACACCGCGGTGCTGGCGGACCGGGTCGGCAGGCTGGACTGCGACCG
GGTGTCCGGGCCGCTCTTCTGCCCGCCGGTACCGGTGGAGGACGCCCGCATGATCGCGCTCGGCCGCGGCCGGCCGGACA
GGTGGTACAAGCCGTCCGCTGAGACCCGGGCCGAGACCGGCTTCCGGTCGGCGAGCCAGCCCGGGCCGCGCCACGACCCG
GCGGGTCACTCCGGTCACGCGGGTCACCCCGGCCAACCGCGCGTCGCGACCCAGCCGGGCCGGCCCACCGCCCAGCCGAC
GCGTTCGGGAGGTACCGCGCAGTCAGGAGATACCGCGTATCCGGGTGGTTCGGGGCGAGGGGACCGTTCGCGGGCGGCTG
CCGCGGGGTGA

Upstream 100 bases:

>100_bases
ATCCGCGGATATCCTGGCTGGAATTTCCGGATGTCGCCGCGGCGCTCGCCGAGGTACGACGTCTGGTGGGTTCGCTCTGA
TATCGGGTTCGCTCTGACGT

Downstream 100 bases:

>100_bases
GCTCGCCGCGGCCGTACGATCGCGGCGTGCGCTTCGTCAAGGGACACGGAACGGGTAACGACTTCCTCATCCTGCCGGAT
GCTGACGGCGAGCTCGATCT

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MAGPAPRDLRPTRRPGSRPIPASGEFDVTALDLALVPALYASFDDGSLRLHYQPDVDLRNGSVPGMQARPRWAHAEFGLL
GPAAFMRVAEAAGLVGQVHQWVLRMAVTEARTWHRMAVGTSVRPPRLWVRIDGRHLARPEFLAEVERLVLGRSLPAGAVG
LQFTEDTLAFAPPALPRLLARLRDLGVAVGVDAFGTWYGSLSTLDVLPLDLVRIDGQFLRATIRDMEGEAAFASLVGVAH
RRRMVVVAEDVDTAVLADRVGRLDCDRVSGPLFCPPVPVEDARMIALGRGRPDRWYKPSAETRAETGFRSASQPGPRHDP
AGHSGHAGHPGQPRVATQPGRPTAQPTRSGGTAQSGDTAYPGGSGRGDRSRAAAAG

Sequences:

>Translated_376_residues
MAGPAPRDLRPTRRPGSRPIPASGEFDVTALDLALVPALYASFDDGSLRLHYQPDVDLRNGSVPGMQARPRWAHAEFGLL
GPAAFMRVAEAAGLVGQVHQWVLRMAVTEARTWHRMAVGTSVRPPRLWVRIDGRHLARPEFLAEVERLVLGRSLPAGAVG
LQFTEDTLAFAPPALPRLLARLRDLGVAVGVDAFGTWYGSLSTLDVLPLDLVRIDGQFLRATIRDMEGEAAFASLVGVAH
RRRMVVVAEDVDTAVLADRVGRLDCDRVSGPLFCPPVPVEDARMIALGRGRPDRWYKPSAETRAETGFRSASQPGPRHDP
AGHSGHAGHPGQPRVATQPGRPTAQPTRSGGTAQSGDTAYPGGSGRGDRSRAAAAG
>Mature_375_residues
AGPAPRDLRPTRRPGSRPIPASGEFDVTALDLALVPALYASFDDGSLRLHYQPDVDLRNGSVPGMQARPRWAHAEFGLLG
PAAFMRVAEAAGLVGQVHQWVLRMAVTEARTWHRMAVGTSVRPPRLWVRIDGRHLARPEFLAEVERLVLGRSLPAGAVGL
QFTEDTLAFAPPALPRLLARLRDLGVAVGVDAFGTWYGSLSTLDVLPLDLVRIDGQFLRATIRDMEGEAAFASLVGVAHR
RRMVVVAEDVDTAVLADRVGRLDCDRVSGPLFCPPVPVEDARMIALGRGRPDRWYKPSAETRAETGFRSASQPGPRHDPA
GHSGHAGHPGQPRVATQPGRPTAQPTRSGGTAQSGDTAYPGGSGRGDRSRAAAAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=272, Percent_Identity=27.2058823529412, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081921, Length=249, Percent_Identity=24.8995983935743, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787055, Length=236, Percent_Identity=26.271186440678, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788849, Length=252, Percent_Identity=25.3968253968254, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=26, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788502, Length=233, Percent_Identity=27.4678111587983, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=24.5967741935484, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI226510982, Length=245, Percent_Identity=23.6734693877551, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 40262; Mature: 40131

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGPAPRDLRPTRRPGSRPIPASGEFDVTALDLALVPALYASFDDGSLRLHYQPDVDLRN
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
GSVPGMQARPRWAHAEFGLLGPAAFMRVAEAAGLVGQVHQWVLRMAVTEARTWHRMAVGT
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SVRPPRLWVRIDGRHLARPEFLAEVERLVLGRSLPAGAVGLQFTEDTLAFAPPALPRLLA
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHCCCHHHHHHH
RLRDLGVAVGVDAFGTWYGSLSTLDVLPLDLVRIDGQFLRATIRDMEGEAAFASLVGVAH
HHHHCCEEECHHHHHHHHCCCCHHHHCCHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHH
RRRMVVVAEDVDTAVLADRVGRLDCDRVSGPLFCPPVPVEDARMIALGRGRPDRWYKPSA
HCEEEEEECCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
ETRAETGFRSASQPGPRHDPAGHSGHAGHPGQPRVATQPGRPTAQPTRSGGTAQSGDTAY
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGGSGRGDRSRAAAAG
CCCCCCCCCCHHCCCC
>Mature Secondary Structure 
AGPAPRDLRPTRRPGSRPIPASGEFDVTALDLALVPALYASFDDGSLRLHYQPDVDLRN
CCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
GSVPGMQARPRWAHAEFGLLGPAAFMRVAEAAGLVGQVHQWVLRMAVTEARTWHRMAVGT
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SVRPPRLWVRIDGRHLARPEFLAEVERLVLGRSLPAGAVGLQFTEDTLAFAPPALPRLLA
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHCCCHHHHHHH
RLRDLGVAVGVDAFGTWYGSLSTLDVLPLDLVRIDGQFLRATIRDMEGEAAFASLVGVAH
HHHHCCEEECHHHHHHHHCCCCHHHHCCHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHH
RRRMVVVAEDVDTAVLADRVGRLDCDRVSGPLFCPPVPVEDARMIALGRGRPDRWYKPSA
HCEEEEEECCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
ETRAETGFRSASQPGPRHDPAGHSGHAGHPGQPRVATQPGRPTAQPTRSGGTAQSGDTAY
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGGSGRGDRSRAAAAG
CCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]