| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is pqqL [C]
Identifier: 158313042
GI number: 158313042
Start: 1415793
End: 1417226
Strand: Direct
Name: pqqL [C]
Synonym: Franean1_1190
Alternate gene names: 158313042
Gene position: 1415793-1417226 (Clockwise)
Preceding gene: 158313041
Following gene: 158313043
Centisome position: 15.76
GC content: 73.08
Gene sequence:
>1434_bases GTGACGGAGACGGATCTGTCCACCTCGGACGACCGCACCTCGGACGGTCGCACCTCGAACGACCGCACCCCGGGCCTGGC CGGGCCGGAGCACGCCTCCGGCCCGCGCCCGGCCCGGGTGGCCGAGCTTCTCGCGGCGGGTCCCGGTTCCGAGGTCCTGC TCGCCGGGGCCGTGCGCCGCACGGTGCTGCCGGGCGGCCTGCGGGTCGTCACGGAGAAGGTCCCCGGGGTCCGGTCGGTG GCGATCGGGATCTGGGTGGGCGTCGGCTCGCGGGACGAGACGCCGCTCACCGGTGGCTGCTCGCACTACCTGGAGCACCT GCTGTTCAAGGGCACCCCGAGCCGGGACGCCCTGTCGATCAGCGCCTCCATCGAGGCCGTCGGCGGTGATCTCAACGCCT TCACCGCCAAGGAGTACACCTGCTACTACGCGCGGGTGCTCGACGTGGACATGGACCTGGCCATCGACGTCGTCTGTGAC ATGGTCGCCAACTCGCTGGTGACCGCGGACGACGTCGAGGCCGAGCGGGGCGTGATCCTCGAGGAGATCGCCATGCACGA GGACGACCCCGGCGACGTCGTGCACGACGTCTTCGCCGACGCCGTCCTCGGCTCCTCCGTCCTGGGGCGACCGGTGCTCG GCACGGTCGACACCATCGAGGCGCTCGGCCGGGAGACGGTCTTCGACTACTACCGCGAGCGGTACGCCCCGCCCGCGCTG GTCGTCTCGATCGCCGGCAACATCGAGCACGACCACGCCCTGGACCGGGTGGTGGCCGCGTTCGCCGACCGGCTCACCGG GCCCGCCCGGCACCAGGAGGTGCGCCGCGGCGAGTACCCGTTCCCGCCGCCGCCGGGCATCGTCGTCACCAACCGGCCGA CCGAGCAGGCCCACGTGGTGCTCGGCACGGCCGGCCTGTCCCGGCACGACCCGCGCCGGTACGCGCTCGGCGTGCTGTCG ACGGCCCTCGGTGGCGGGATGAGCTCGCGGCTGTTCCAGGAGGTGCGGGAGAAGCGCGGGCTGGCCTACTCCGTGTACTC CTTCGACAACCAGTTCGCCGACGCCGGGCTGTTCGGCGTCTACGCGGGCTGTACCCCGGGGCGCGCCGACGAGGTGCTGG AGATCTGCCGCGAGCAGGTGCACCGGATCGCCGAGCACGGCATCACCGCGGAGGAGCTCGAGCGGGCCCGCGGCCAGAAC CGCGGCGGCCTGGTGCTCAACCTGGAGGACACCGGGTCGCGGATGAGCCGGCTCGGCAAGAGCGAGCTCGTCCACGGCGA GCTGCTCTCGGTCGACGAGGTGCTCGCCCGGGTCGAGGCCGTCACACTCGACGACGTGCGGGCCGTCGCCGGCGAGCTGG TCGACCAGCCGTGGGCGCTCGGCGTCATCGGCCCGTTCGAGGACCACGACTTCAGCGCGGCCGTAGCGCGGTGA
Upstream 100 bases:
>100_bases CAGGTGGAGATCACCGAGATCGACGCCCGCGGCAAGATCAGCCTCGCGCCGGGCGCGGAGTCCATCGACACCGTAAGCGC CGGATCCTGACAGGAGCGCA
Downstream 100 bases:
>100_bases CCCGCGCGGCCGCTGGCGGTACCGGACACGTGGAGGGCACGGGATGATCGGCGTCGGGGTGCTCGGAGCCCGTGGCCGGA TGGGCACGACCGTCTGCGAC
Product: peptidase M16 domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 477; Mature: 476
Protein sequence:
>477_residues MTETDLSTSDDRTSDGRTSNDRTPGLAGPEHASGPRPARVAELLAAGPGSEVLLAGAVRRTVLPGGLRVVTEKVPGVRSV AIGIWVGVGSRDETPLTGGCSHYLEHLLFKGTPSRDALSISASIEAVGGDLNAFTAKEYTCYYARVLDVDMDLAIDVVCD MVANSLVTADDVEAERGVILEEIAMHEDDPGDVVHDVFADAVLGSSVLGRPVLGTVDTIEALGRETVFDYYRERYAPPAL VVSIAGNIEHDHALDRVVAAFADRLTGPARHQEVRRGEYPFPPPPGIVVTNRPTEQAHVVLGTAGLSRHDPRRYALGVLS TALGGGMSSRLFQEVREKRGLAYSVYSFDNQFADAGLFGVYAGCTPGRADEVLEICREQVHRIAEHGITAEELERARGQN RGGLVLNLEDTGSRMSRLGKSELVHGELLSVDEVLARVEAVTLDDVRAVAGELVDQPWALGVIGPFEDHDFSAAVAR
Sequences:
>Translated_477_residues MTETDLSTSDDRTSDGRTSNDRTPGLAGPEHASGPRPARVAELLAAGPGSEVLLAGAVRRTVLPGGLRVVTEKVPGVRSV AIGIWVGVGSRDETPLTGGCSHYLEHLLFKGTPSRDALSISASIEAVGGDLNAFTAKEYTCYYARVLDVDMDLAIDVVCD MVANSLVTADDVEAERGVILEEIAMHEDDPGDVVHDVFADAVLGSSVLGRPVLGTVDTIEALGRETVFDYYRERYAPPAL VVSIAGNIEHDHALDRVVAAFADRLTGPARHQEVRRGEYPFPPPPGIVVTNRPTEQAHVVLGTAGLSRHDPRRYALGVLS TALGGGMSSRLFQEVREKRGLAYSVYSFDNQFADAGLFGVYAGCTPGRADEVLEICREQVHRIAEHGITAEELERARGQN RGGLVLNLEDTGSRMSRLGKSELVHGELLSVDEVLARVEAVTLDDVRAVAGELVDQPWALGVIGPFEDHDFSAAVAR >Mature_476_residues TETDLSTSDDRTSDGRTSNDRTPGLAGPEHASGPRPARVAELLAAGPGSEVLLAGAVRRTVLPGGLRVVTEKVPGVRSVA IGIWVGVGSRDETPLTGGCSHYLEHLLFKGTPSRDALSISASIEAVGGDLNAFTAKEYTCYYARVLDVDMDLAIDVVCDM VANSLVTADDVEAERGVILEEIAMHEDDPGDVVHDVFADAVLGSSVLGRPVLGTVDTIEALGRETVFDYYRERYAPPALV VSIAGNIEHDHALDRVVAAFADRLTGPARHQEVRRGEYPFPPPPGIVVTNRPTEQAHVVLGTAGLSRHDPRRYALGVLST ALGGGMSSRLFQEVREKRGLAYSVYSFDNQFADAGLFGVYAGCTPGRADEVLEICREQVHRIAEHGITAEELERARGQNR GGLVLNLEDTGSRMSRLGKSELVHGELLSVDEVLARVEAVTLDDVRAVAGELVDQPWALGVIGPFEDHDFSAAVAR
Specific function: Unknown
COG id: COG0612
COG function: function code R; Predicted Zn-dependent peptidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M16 family [H]
Homologues:
Organism=Homo sapiens, GI94538354, Length=432, Percent_Identity=30.0925925925926, Blast_Score=210, Evalue=2e-54, Organism=Homo sapiens, GI46593007, Length=437, Percent_Identity=28.604118993135, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI24308013, Length=474, Percent_Identity=23.4177215189873, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI50592988, Length=420, Percent_Identity=22.1428571428571, Blast_Score=77, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71999683, Length=400, Percent_Identity=27.25, Blast_Score=164, Evalue=1e-40, Organism=Caenorhabditis elegans, GI17553678, Length=431, Percent_Identity=26.2180974477958, Blast_Score=137, Evalue=9e-33, Organism=Caenorhabditis elegans, GI17510601, Length=432, Percent_Identity=24.0740740740741, Blast_Score=87, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6323192, Length=430, Percent_Identity=29.5348837209302, Blast_Score=181, Evalue=3e-46, Organism=Saccharomyces cerevisiae, GI6321813, Length=411, Percent_Identity=27.007299270073, Blast_Score=162, Evalue=8e-41, Organism=Saccharomyces cerevisiae, GI6319426, Length=447, Percent_Identity=22.1476510067114, Blast_Score=81, Evalue=3e-16, Organism=Drosophila melanogaster, GI21357875, Length=434, Percent_Identity=27.1889400921659, Blast_Score=178, Evalue=9e-45, Organism=Drosophila melanogaster, GI24646943, Length=434, Percent_Identity=27.1889400921659, Blast_Score=178, Evalue=9e-45, Organism=Drosophila melanogaster, GI19921772, Length=495, Percent_Identity=25.6565656565657, Blast_Score=127, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011249 - InterPro: IPR011237 - InterPro: IPR011765 - InterPro: IPR001431 - InterPro: IPR007863 [H]
Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]
EC number: 3.4.99.- [C]
Molecular weight: Translated: 51031; Mature: 50900
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: PS00143 INSULINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTETDLSTSDDRTSDGRTSNDRTPGLAGPEHASGPRPARVAELLAAGPGSEVLLAGAVRR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH TVLPGGLRVVTEKVPGVRSVAIGIWVGVGSRDETPLTGGCSHYLEHLLFKGTPSRDALSI HHCCCCCEEHHHHCCCHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEE SASIEAVGGDLNAFTAKEYTCYYARVLDVDMDLAIDVVCDMVANSLVTADDVEAERGVIL EEEHEECCCCCCCEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH EEIAMHEDDPGDVVHDVFADAVLGSSVLGRPVLGTVDTIEALGRETVFDYYRERYAPPAL HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE VVSIAGNIEHDHALDRVVAAFADRLTGPARHQEVRRGEYPFPPPPGIVVTNRPTEQAHVV EEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEE LGTAGLSRHDPRRYALGVLSTALGGGMSSRLFQEVREKRGLAYSVYSFDNQFADAGLFGV EEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCHHHCCCHHEE YAGCTPGRADEVLEICREQVHRIAEHGITAEELERARGQNRGGLVLNLEDTGSRMSRLGK ECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHCCH SELVHGELLSVDEVLARVEAVTLDDVRAVAGELVDQPWALGVIGPFEDHDFSAAVAR HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCC >Mature Secondary Structure TETDLSTSDDRTSDGRTSNDRTPGLAGPEHASGPRPARVAELLAAGPGSEVLLAGAVRR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH TVLPGGLRVVTEKVPGVRSVAIGIWVGVGSRDETPLTGGCSHYLEHLLFKGTPSRDALSI HHCCCCCEEHHHHCCCHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEE SASIEAVGGDLNAFTAKEYTCYYARVLDVDMDLAIDVVCDMVANSLVTADDVEAERGVIL EEEHEECCCCCCCEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH EEIAMHEDDPGDVVHDVFADAVLGSSVLGRPVLGTVDTIEALGRETVFDYYRERYAPPAL HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE VVSIAGNIEHDHALDRVVAAFADRLTGPARHQEVRRGEYPFPPPPGIVVTNRPTEQAHVV EEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEE LGTAGLSRHDPRRYALGVLSTALGGGMSSRLFQEVREKRGLAYSVYSFDNQFADAGLFGV EEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCHHHCCCHHEE YAGCTPGRADEVLEICREQVHRIAEHGITAEELERARGQNRGGLVLNLEDTGSRMSRLGK ECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHCCH SELVHGELLSVDEVLARVEAVTLDDVRAVAGELVDQPWALGVIGPFEDHDFSAAVAR HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12000953 [H]