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The map label for this gene is ycgM [C]

Identifier: 158312959

GI number: 158312959

Start: 1321458

End: 1322234

Strand: Direct

Name: ycgM [C]

Synonym: Franean1_1105

Alternate gene names: 158312959

Gene position: 1321458-1322234 (Clockwise)

Preceding gene: 158312957

Following gene: 158312962

Centisome position: 14.71

GC content: 70.53

Gene sequence:

>777_bases
GTGCGCATAGCGAGGTACACCGACGGGTCCGAGCCGGCATTCGGAGTGGTGGAAGGCTCCGTGGCGGACGGAACCGCCAT
TGTTGCCGGGATCACACCGCATCCGTTCGCGCCCTTCACCTTCACCGGGGCGCGGCGACCGCTGGCGGAGGTACGGCTGC
TGGCCCCCGTGCTGCCCAGCAAGATTCTCTGTATCGGGAAGAACTACGCCGACCACGCACGGGAGATGGGCGGCGAGGCC
CCGACCAGTCCCGTCCTGTTCCTGAAGCCGTCCACGAGCGTGGCCGGCCCCGGGGACCCGATCGTGCTGCCGCCCGACAG
CGAGCGGGTCGACTACGAGGGCGAGCTGGCCGTCGTCATCGGCCGGCTCTGCCGTGACGTGCCGGCGGAACGCGCATTGT
CCGTCGTCCTCGGCTTCACCTGCGCGAACGACGTGACCGCTCGCGACCAGCAGGCGACGGACGGCCAGTGGACCCGCGCC
AAGGGCCACGACACCTTCTGTCCGATCGGCCCCTGGATCGAGACGGACCTCGACCCGTCCGACCGGGCCATCCGGACGAC
GCTGGACGGCGAGGTCCGCCAGGACTCGCGGACCAAACTCCTCCTGCACGACGTCCCGGCGCTGGTGGCGTTCATGTCCC
GCGCGATGACCCTGCTCCCGGGAGACGTCCTGCTGACCGGCACCCCGGCCGGAGTCGGCCCGATGCGCGCCGGCCAGACC
GTAGCCGTCACGGTGGACGGCATCGGAACCCTGACGAACCCCGTGACCACCCGATAA

Upstream 100 bases:

>100_bases
AGTGGTCCGGACCACAGTGCGGCCTGGCCGCCGCCGCGTGCCGGAACCCGGCCCGGATCCGGACACCCCGATTCCCGCGT
TCGGTCGGTACGGTCGCGGA

Downstream 100 bases:

>100_bases
CCAGGCCACGGCCGCAACCAGGCCGCTCCCGGTCCCGGTCGTCCCGGCCTCGAATCCCAAGGTTCCCGCCGCCCGGAGCC
CCGAGCCCGGAGCCCCGATC

Product: 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MRIARYTDGSEPAFGVVEGSVADGTAIVAGITPHPFAPFTFTGARRPLAEVRLLAPVLPSKILCIGKNYADHAREMGGEA
PTSPVLFLKPSTSVAGPGDPIVLPPDSERVDYEGELAVVIGRLCRDVPAERALSVVLGFTCANDVTARDQQATDGQWTRA
KGHDTFCPIGPWIETDLDPSDRAIRTTLDGEVRQDSRTKLLLHDVPALVAFMSRAMTLLPGDVLLTGTPAGVGPMRAGQT
VAVTVDGIGTLTNPVTTR

Sequences:

>Translated_258_residues
MRIARYTDGSEPAFGVVEGSVADGTAIVAGITPHPFAPFTFTGARRPLAEVRLLAPVLPSKILCIGKNYADHAREMGGEA
PTSPVLFLKPSTSVAGPGDPIVLPPDSERVDYEGELAVVIGRLCRDVPAERALSVVLGFTCANDVTARDQQATDGQWTRA
KGHDTFCPIGPWIETDLDPSDRAIRTTLDGEVRQDSRTKLLLHDVPALVAFMSRAMTLLPGDVLLTGTPAGVGPMRAGQT
VAVTVDGIGTLTNPVTTR
>Mature_258_residues
MRIARYTDGSEPAFGVVEGSVADGTAIVAGITPHPFAPFTFTGARRPLAEVRLLAPVLPSKILCIGKNYADHAREMGGEA
PTSPVLFLKPSTSVAGPGDPIVLPPDSERVDYEGELAVVIGRLCRDVPAERALSVVLGFTCANDVTARDQQATDGQWTRA
KGHDTFCPIGPWIETDLDPSDRAIRTTLDGEVRQDSRTKLLLHDVPALVAFMSRAMTLLPGDVLLTGTPAGVGPMRAGQT
VAVTVDGIGTLTNPVTTR

Specific function: Unknown

COG id: COG0179

COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAH family [H]

Homologues:

Organism=Homo sapiens, GI40786394, Length=222, Percent_Identity=41.8918918918919, Blast_Score=171, Evalue=6e-43,
Organism=Homo sapiens, GI156231349, Length=238, Percent_Identity=41.1764705882353, Blast_Score=170, Evalue=1e-42,
Organism=Homo sapiens, GI13654274, Length=202, Percent_Identity=37.6237623762376, Blast_Score=152, Evalue=2e-37,
Organism=Homo sapiens, GI66348062, Length=194, Percent_Identity=38.1443298969072, Blast_Score=150, Evalue=1e-36,
Organism=Homo sapiens, GI215422413, Length=195, Percent_Identity=37.9487179487179, Blast_Score=150, Evalue=1e-36,
Organism=Escherichia coli, GI1787428, Length=206, Percent_Identity=40.2912621359223, Blast_Score=152, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17557057, Length=190, Percent_Identity=37.8947368421053, Blast_Score=135, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6324161, Length=220, Percent_Identity=31.3636363636364, Blast_Score=115, Evalue=9e-27,
Organism=Drosophila melanogaster, GI28572127, Length=220, Percent_Identity=35.9090909090909, Blast_Score=141, Evalue=4e-34,
Organism=Drosophila melanogaster, GI24663695, Length=221, Percent_Identity=34.3891402714932, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI28571789, Length=199, Percent_Identity=35.678391959799, Blast_Score=123, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002529
- InterPro:   IPR011234 [H]

Pfam domain/function: PF01557 FAA_hydrolase [H]

EC number: NA

Molecular weight: Translated: 27263; Mature: 27263

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIARYTDGSEPAFGVVEGSVADGTAIVAGITPHPFAPFTFTGARRPLAEVRLLAPVLPS
CEEECCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHCCC
KILCIGKNYADHAREMGGEAPTSPVLFLKPSTSVAGPGDPIVLPPDSERVDYEGELAVVI
EEEEECCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHH
GRLCRDVPAERALSVVLGFTCANDVTARDQQATDGQWTRAKGHDTFCPIGPWIETDLDPS
HHHHHCCCHHHHHHHHHEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
DRAIRTTLDGEVRQDSRTKLLLHDVPALVAFMSRAMTLLPGDVLLTGTPAGVGPMRAGQT
CCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCE
VAVTVDGIGTLTNPVTTR
EEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRIARYTDGSEPAFGVVEGSVADGTAIVAGITPHPFAPFTFTGARRPLAEVRLLAPVLPS
CEEECCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHCCC
KILCIGKNYADHAREMGGEAPTSPVLFLKPSTSVAGPGDPIVLPPDSERVDYEGELAVVI
EEEEECCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHH
GRLCRDVPAERALSVVLGFTCANDVTARDQQATDGQWTRAKGHDTFCPIGPWIETDLDPS
HHHHHCCCHHHHHHHHHEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
DRAIRTTLDGEVRQDSRTKLLLHDVPALVAFMSRAMTLLPGDVLLTGTPAGVGPMRAGQT
CCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCE
VAVTVDGIGTLTNPVTTR
EEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]