| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158312915
Identifier: 158312915
GI number: 158312915
Start: 1250929
End: 1252746
Strand: Direct
Name: 158312915
Synonym: Franean1_1061
Alternate gene names: NA
Gene position: 1250929-1252746 (Clockwise)
Preceding gene: 158312914
Following gene: 158312916
Centisome position: 13.93
GC content: 72.39
Gene sequence:
>1818_bases ATGGCCTCGACACCCGGCGGCCGACCGACCCCTCAGGTCGACCGCACCTCCCGGTTCGGCTTCGGCCGGAATCCCGCGGG CGCCCCGGCGTCCCGGCCGCCGCGGCCGCGCCGCCGGCACCGCTTCGGCCGTGGGCCGCGGCTTGGCCTGGCAGCCGGCT TCGTGCTGGCGCTGTCCCTGCCGCTGGTGGCGCCGGCCGGTGCCGCGCCGACGGCCGCCACGCCGACACCGTCGCCCACC GTGGGCACGACCCCGGAGGCTGACGGAACCTCGTCGCCCGTGCCGTCCTCGTCGGCCGGGGGTGTCGCCGACCAGCAGGT CCCGGTCGCCGGCCTGACCTCCGGCCCGGCCACCGCCGGGCAGTCGAAGCTGACTCTCGTCCTGTTCGACAGCGACATCG TGCTCGTCGGCGGGCGTGGCTTCGGGCCCGGCAAGGACGTGGCGGTCACCGCCGCGACCACCGACCTCGGTGGCTCCGCG AGCGCCCGGGCCGGCGCGGACGGCCGGTTCATCCTCGGCTTCCAGGTGCCGCTCGGTTTCTCCGGCCGGGTGACCGTGAC GGCGAAGCAGGAGTCGGTGGAGGCCAGCGGCACGCTCGACGTCGTCGACGCTGGCACGCCGGGCCTGGCGAACGGGGCGG CCAACGGCGCCGAGGTCCCCGCACCAGCCCCGACGGCGAGTCCTGTCCCGGGCCCCGCGGCCACCCCGGCGCCGACGACC GCCGAGCCCACGACTTCGGAGCCCACGACTTCGGAGCCCACGGCCTCCGGGCCCACCAGCTCGGAGCCGACGGGCACCGC TCGGGCCACCACCCCCCCGAGCACCGGCCGGCGGGGCTCGTCGGCGCCGACCGCCGTACCCGCGCCAGCGCCCACGGCCG CGCCGTCGGCGGGGAGCGGGACGGGCACCGGCACCACCACCGGCGGCACCGGCCGGCTCTCCGGCCTGCCCTGGATGTCC GGCGTCTACCCGTCGCACGTCCTGTCGCAGGTCATGTCCTTCGGGACGTGGCGCGGGCGGGCGAACGACGTGGCGCACGT GTTCACCGTCCGTACCCAGGGCTGGAACGCGATGGTCGAGCCGCGCTGGCCGCTGGACCTGTACAAGGCCTTCCCGGGCA AGCTGATTATCAGCCAGCCGACCTATCCGAAGGGCCAGGGCAACAACGCGGCCTGCGCCCGCGGCGAGTACGACAGCTAC TGGAAGACCTTCGGCACGTTCCTCAAGAACAACGGCCGCGCCGATTCGATCGTCCGCATCGGCTGGGAATTCAACGGCAA GTTCATGTACTGGCACTCGGACCCGGCCGGGACGGAGTTCCGCGACTGCTTCCGCAAGATCTCGACTGCCATCCGCTCGA CGGACCCCGCGGTGAAGATCGACTGGACGTTCAACGCGCACGCCTCGCCGGTTCCCAACGGGGGCACCCCGTGGGCGGCC TACCCTGGTGACGAGTACGTCGACTATGTCGGCATCGACTCCTACGACTGGTACCCGCCGTCGCGGGACGAGGCCACCTG GAAGAAGCAGTGCGAGGACCCGAACGGCCTGTGCTACCTGCTCGAGTTCGCCCGCCAGCACGGCAAGAAGGTGGGCGTGG GCGAATGGGGCGTGTCCTCGTGCAGCCGCAACGGCGGCGGTGACAACCCCTTCTACATCCAGAAGATGTTCGACACGTTC ACGAAGTACGCGGACGTGATGGCGTACGAGTCGTACTTCCACGACGCGGCGCCCGGCAACGTCTGCTCGACCATCATGAA CGGCGGCCAGAACCCGAAGGCGTCCGCCCTGTACAAGAAACTGTTCGGCTCGGTCTGA
Upstream 100 bases:
>100_bases CGAGCCGCAGGGAGACCGCACAGCCGGTTTCCCGCGTGTGCCGAGTTGTTTGTCCGTCGATGCTCCGTCCGACGCCACGA CCGAAAGGCGGCGCGCGAGC
Downstream 100 bases:
>100_bases AGGGCGCCACTCAGCGCTGCTCGTCTTCCGGGCAGCGCTGAGCAGCCCGGTCCGAACGGTGGACCGCTTTCGGCACACAG ATGATCGTTCGTTTCAGTGA
Product: FHA domain-containing protein
Products: NA
Alternate protein names: Glycosidase; Beta-Mannanase; FHA Domain-Containing Protein
Number of amino acids: Translated: 605; Mature: 604
Protein sequence:
>605_residues MASTPGGRPTPQVDRTSRFGFGRNPAGAPASRPPRPRRRHRFGRGPRLGLAAGFVLALSLPLVAPAGAAPTAATPTPSPT VGTTPEADGTSSPVPSSSAGGVADQQVPVAGLTSGPATAGQSKLTLVLFDSDIVLVGGRGFGPGKDVAVTAATTDLGGSA SARAGADGRFILGFQVPLGFSGRVTVTAKQESVEASGTLDVVDAGTPGLANGAANGAEVPAPAPTASPVPGPAATPAPTT AEPTTSEPTTSEPTASGPTSSEPTGTARATTPPSTGRRGSSAPTAVPAPAPTAAPSAGSGTGTGTTTGGTGRLSGLPWMS GVYPSHVLSQVMSFGTWRGRANDVAHVFTVRTQGWNAMVEPRWPLDLYKAFPGKLIISQPTYPKGQGNNAACARGEYDSY WKTFGTFLKNNGRADSIVRIGWEFNGKFMYWHSDPAGTEFRDCFRKISTAIRSTDPAVKIDWTFNAHASPVPNGGTPWAA YPGDEYVDYVGIDSYDWYPPSRDEATWKKQCEDPNGLCYLLEFARQHGKKVGVGEWGVSSCSRNGGGDNPFYIQKMFDTF TKYADVMAYESYFHDAAPGNVCSTIMNGGQNPKASALYKKLFGSV
Sequences:
>Translated_605_residues MASTPGGRPTPQVDRTSRFGFGRNPAGAPASRPPRPRRRHRFGRGPRLGLAAGFVLALSLPLVAPAGAAPTAATPTPSPT VGTTPEADGTSSPVPSSSAGGVADQQVPVAGLTSGPATAGQSKLTLVLFDSDIVLVGGRGFGPGKDVAVTAATTDLGGSA SARAGADGRFILGFQVPLGFSGRVTVTAKQESVEASGTLDVVDAGTPGLANGAANGAEVPAPAPTASPVPGPAATPAPTT AEPTTSEPTTSEPTASGPTSSEPTGTARATTPPSTGRRGSSAPTAVPAPAPTAAPSAGSGTGTGTTTGGTGRLSGLPWMS GVYPSHVLSQVMSFGTWRGRANDVAHVFTVRTQGWNAMVEPRWPLDLYKAFPGKLIISQPTYPKGQGNNAACARGEYDSY WKTFGTFLKNNGRADSIVRIGWEFNGKFMYWHSDPAGTEFRDCFRKISTAIRSTDPAVKIDWTFNAHASPVPNGGTPWAA YPGDEYVDYVGIDSYDWYPPSRDEATWKKQCEDPNGLCYLLEFARQHGKKVGVGEWGVSSCSRNGGGDNPFYIQKMFDTF TKYADVMAYESYFHDAAPGNVCSTIMNGGQNPKASALYKKLFGSV >Mature_604_residues ASTPGGRPTPQVDRTSRFGFGRNPAGAPASRPPRPRRRHRFGRGPRLGLAAGFVLALSLPLVAPAGAAPTAATPTPSPTV GTTPEADGTSSPVPSSSAGGVADQQVPVAGLTSGPATAGQSKLTLVLFDSDIVLVGGRGFGPGKDVAVTAATTDLGGSAS ARAGADGRFILGFQVPLGFSGRVTVTAKQESVEASGTLDVVDAGTPGLANGAANGAEVPAPAPTASPVPGPAATPAPTTA EPTTSEPTTSEPTASGPTSSEPTGTARATTPPSTGRRGSSAPTAVPAPAPTAAPSAGSGTGTGTTTGGTGRLSGLPWMSG VYPSHVLSQVMSFGTWRGRANDVAHVFTVRTQGWNAMVEPRWPLDLYKAFPGKLIISQPTYPKGQGNNAACARGEYDSYW KTFGTFLKNNGRADSIVRIGWEFNGKFMYWHSDPAGTEFRDCFRKISTAIRSTDPAVKIDWTFNAHASPVPNGGTPWAAY PGDEYVDYVGIDSYDWYPPSRDEATWKKQCEDPNGLCYLLEFARQHGKKVGVGEWGVSSCSRNGGGDNPFYIQKMFDTFT KYADVMAYESYFHDAAPGNVCSTIMNGGQNPKASALYKKLFGSV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62702; Mature: 62571
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTPGGRPTPQVDRTSRFGFGRNPAGAPASRPPRPRRRHRFGRGPRLGLAAGFVLALSL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHH PLVAPAGAAPTAATPTPSPTVGTTPEADGTSSPVPSSSAGGVADQQVPVAGLTSGPATAG HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC QSKLTLVLFDSDIVLVGGRGFGPGKDVAVTAATTDLGGSASARAGADGRFILGFQVPLGF CCEEEEEEECCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCC SGRVTVTAKQESVEASGTLDVVDAGTPGLANGAANGAEVPAPAPTASPVPGPAATPAPTT CCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AEPTTSEPTTSEPTASGPTSSEPTGTARATTPPSTGRRGSSAPTAVPAPAPTAAPSAGSG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TGTGTTTGGTGRLSGLPWMSGVYPSHVLSQVMSFGTWRGRANDVAHVFTVRTQGWNAMVE CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCEEEC PRWPLDLYKAFPGKLIISQPTYPKGQGNNAACARGEYDSYWKTFGTFLKNNGRADSIVRI CCCCHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEE GWEFNGKFMYWHSDPAGTEFRDCFRKISTAIRSTDPAVKIDWTFNAHASPVPNGGTPWAA EEEECCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCC YPGDEYVDYVGIDSYDWYPPSRDEATWKKQCEDPNGLCYLLEFARQHGKKVGVGEWGVSS CCCCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCCCEEHHHHHHHHHCCEECCCCCCHHH CSRNGGGDNPFYIQKMFDTFTKYADVMAYESYFHDAAPGNVCSTIMNGGQNPKASALYKK HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHH LFGSV HHCCC >Mature Secondary Structure ASTPGGRPTPQVDRTSRFGFGRNPAGAPASRPPRPRRRHRFGRGPRLGLAAGFVLALSL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHH PLVAPAGAAPTAATPTPSPTVGTTPEADGTSSPVPSSSAGGVADQQVPVAGLTSGPATAG HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC QSKLTLVLFDSDIVLVGGRGFGPGKDVAVTAATTDLGGSASARAGADGRFILGFQVPLGF CCEEEEEEECCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCC SGRVTVTAKQESVEASGTLDVVDAGTPGLANGAANGAEVPAPAPTASPVPGPAATPAPTT CCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AEPTTSEPTTSEPTASGPTSSEPTGTARATTPPSTGRRGSSAPTAVPAPAPTAAPSAGSG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TGTGTTTGGTGRLSGLPWMSGVYPSHVLSQVMSFGTWRGRANDVAHVFTVRTQGWNAMVE CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCEEEC PRWPLDLYKAFPGKLIISQPTYPKGQGNNAACARGEYDSYWKTFGTFLKNNGRADSIVRI CCCCHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEE GWEFNGKFMYWHSDPAGTEFRDCFRKISTAIRSTDPAVKIDWTFNAHASPVPNGGTPWAA EEEECCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCC YPGDEYVDYVGIDSYDWYPPSRDEATWKKQCEDPNGLCYLLEFARQHGKKVGVGEWGVSS CCCCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCCCEEHHHHHHHHHCCEECCCCCCHHH CSRNGGGDNPFYIQKMFDTFTKYADVMAYESYFHDAAPGNVCSTIMNGGQNPKASALYKK HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHH LFGSV HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA