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The map label for this gene is atpH

Identifier: 158312875

GI number: 158312875

Start: 1200924

End: 1201763

Strand: Direct

Name: atpH

Synonym: Franean1_1021

Alternate gene names: 158312875

Gene position: 1200924-1201763 (Clockwise)

Preceding gene: 158312874

Following gene: 158312876

Centisome position: 13.37

GC content: 76.31

Gene sequence:

>840_bases
GTGGAGGGAGCCAGCCGGCAGTCGCTCGCCGCCGCCAGGTCGGTCCTCGACCAGGTGACGGCGGTGCCGATCGGCGCAAC
CGCCGGTACGGTCGCGCCCGAGGTCCGTCGGATCGCCGGCGATCTCAGCGCGGTCGCCACGCTCGTCGGGGGCGAGCCGA
CGGTTCGGCGCGCCCTCACCGACCCAGGCGCGCCGCCCCAGTCGCGGACGGGCCTCGCGGCCCGTCTGCTCGGCGGGCAG
ATCAGTCAGGGGGCGCTCGCCGTCGTCTCGGCGGCCGTCGCCGGCCGCTGGTCGCGTCCCGCCGACCTCCGGTACGCGCT
CGAGGAGCTCGCCGTCGAGGCGACGCTGGCGGAGGCGGAGGCGGCCGACGCCCTCGACGAGGTCGAGGACGAGCTGTTCC
GGTTCGGCCGGATCCTCGGCCAGAACCCGCAGCTCTCGCTCGCCCTCACCGACCCGGCGGCGCCGACGTCCGCGAAGGTG
GGGCTGGTGACGCGGCTGCTGTCCGGCCGCGCCCACCCGGTGACCCTGCGGCTGGCCGAGCAGGCGGTGGCCGACCGCGA
GCAGGGTGACATCGAGCGGCGCCTGGAGCAGCTGAGCCGGATCGCGGCCGCCCGCCGCGGGCGGGTGGTCGCCGTCGTCC
GTACCGCGACCGTGCTCGACGCCGACCAGATCGCGCGGCTGAAGGCGGCGATCAGCCGCTTCTTCGGCCGGCAGATCCAG
CTCCAGATCGATCTCGACCCCGCTGTCCTCGGTGGTGTCGCCGTGCGGGTCGGTGACGAGGTCGTGGACGGCACCGTCCT
GCGCCGCCTCGCGGCAGCCCGCCGCGGGCTGACCCGTTAG

Upstream 100 bases:

>100_bases
AGAACGACACCCGCCAGCGGCAGCTCGTCGACGACTTCATCGCGGGTCTCGACGAGGCTCCGCAGCCTGACGCCGTCCCG
GCCGGGCCGGGAGTCTGACG

Downstream 100 bases:

>100_bases
GCCGCGGAGCGCGATGGGTGAGCTGAAGCCGGGACCGATCCCAGAACCGGCAGAGACGACCGATGACCAGATCCACGCCA
GCCATGAAGGACCAACGCGA

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MEGASRQSLAAARSVLDQVTAVPIGATAGTVAPEVRRIAGDLSAVATLVGGEPTVRRALTDPGAPPQSRTGLAARLLGGQ
ISQGALAVVSAAVAGRWSRPADLRYALEELAVEATLAEAEAADALDEVEDELFRFGRILGQNPQLSLALTDPAAPTSAKV
GLVTRLLSGRAHPVTLRLAEQAVADREQGDIERRLEQLSRIAAARRGRVVAVVRTATVLDADQIARLKAAISRFFGRQIQ
LQIDLDPAVLGGVAVRVGDEVVDGTVLRRLAAARRGLTR

Sequences:

>Translated_279_residues
MEGASRQSLAAARSVLDQVTAVPIGATAGTVAPEVRRIAGDLSAVATLVGGEPTVRRALTDPGAPPQSRTGLAARLLGGQ
ISQGALAVVSAAVAGRWSRPADLRYALEELAVEATLAEAEAADALDEVEDELFRFGRILGQNPQLSLALTDPAAPTSAKV
GLVTRLLSGRAHPVTLRLAEQAVADREQGDIERRLEQLSRIAAARRGRVVAVVRTATVLDADQIARLKAAISRFFGRQIQ
LQIDLDPAVLGGVAVRVGDEVVDGTVLRRLAAARRGLTR
>Mature_279_residues
MEGASRQSLAAARSVLDQVTAVPIGATAGTVAPEVRRIAGDLSAVATLVGGEPTVRRALTDPGAPPQSRTGLAARLLGGQ
ISQGALAVVSAAVAGRWSRPADLRYALEELAVEATLAEAEAADALDEVEDELFRFGRILGQNPQLSLALTDPAAPTSAKV
GLVTRLLSGRAHPVTLRLAEQAVADREQGDIERRLEQLSRIAAARRGRVVAVVRTATVLDADQIARLKAAISRFFGRQIQ
LQIDLDPAVLGGVAVRVGDEVVDGTVLRRLAAARRGLTR

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Homo sapiens, GI4502303, Length=185, Percent_Identity=25.4054054054054, Blast_Score=68, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_FRASN (A8L3W2)

Other databases:

- EMBL:   CP000820
- RefSeq:   YP_001505383.1
- GeneID:   5669435
- GenomeReviews:   CP000820_GR
- KEGG:   fre:Franean1_1021
- HOGENOM:   HBG566588
- OMA:   AVEDELF
- ProtClustDB:   PRK13430
- BioCyc:   FSP1855:FRANEAN1_1021-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 29214; Mature: 29214

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGASRQSLAAARSVLDQVTAVPIGATAGTVAPEVRRIAGDLSAVATLVGGEPTVRRALT
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHC
DPGAPPQSRTGLAARLLGGQISQGALAVVSAAVAGRWSRPADLRYALEELAVEATLAEAE
CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
AADALDEVEDELFRFGRILGQNPQLSLALTDPAAPTSAKVGLVTRLLSGRAHPVTLRLAE
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEHHHHH
QAVADREQGDIERRLEQLSRIAAARRGRVVAVVRTATVLDADQIARLKAAISRFFGRQIQ
HHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHCHHHHHHHHHHHHHHCCCEEE
LQIDLDPAVLGGVAVRVGDEVVDGTVLRRLAAARRGLTR
EEEECCHHHHHHHHEECCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEGASRQSLAAARSVLDQVTAVPIGATAGTVAPEVRRIAGDLSAVATLVGGEPTVRRALT
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHC
DPGAPPQSRTGLAARLLGGQISQGALAVVSAAVAGRWSRPADLRYALEELAVEATLAEAE
CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
AADALDEVEDELFRFGRILGQNPQLSLALTDPAAPTSAKVGLVTRLLSGRAHPVTLRLAE
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEHHHHH
QAVADREQGDIERRLEQLSRIAAARRGRVVAVVRTATVLDADQIARLKAAISRFFGRQIQ
HHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHCHHHHHHHHHHHHHHCCCEEE
LQIDLDPAVLGGVAVRVGDEVVDGTVLRRLAAARRGLTR
EEEECCHHHHHHHHEECCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA