| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158312672
Identifier: 158312672
GI number: 158312672
Start: 953879
End: 954265
Strand: Direct
Name: 158312672
Synonym: Franean1_0816
Alternate gene names: NA
Gene position: 953879-954265 (Clockwise)
Preceding gene: 158312669
Following gene: 158312675
Centisome position: 10.62
GC content: 75.19
Gene sequence:
>387_bases ATGTCGGATTCGGTCCGCGAGCTGTCCCGGCAGACGAACCTCCTGCTCTCCCGCGTGCGGAGCTGGACGGGCTCGTCCTG GGACGTGCGGATCCCCACCGGGGAGACGCGCGCCGCCCGGCTCCGGACGCTGATCGACGAGCTGGCCATGCTCGGCCGGC AGGCCGGCAGCGGCGCTCCGCTCGGCGTCCGCCCGCCGCGGGTGGCGGATCACGCCCTGCCCGACCAGCTCATCGTCCTC GCGGACGACTTCCTCGACGCCGTCACCTCGGCCGACCGGTCCGCCGCGCCGGGCCGGAAGGCCGATCTGATGGGCCGCGC GCTCACCGCGGTGAGCACCGCCCGCAACGATCTCGACGGCCCGGGTTTCGGCTTCCGGCCGCGCTGA
Upstream 100 bases:
>100_bases CAGAGGTTGAACCCGACGTCAACGGACCATGAAGCGAGCGTGCCTCATACCACACGTCTGAGCAAGACCCGAGAGTGCCA TCGTCGGGTATCCTGCCCGG
Downstream 100 bases:
>100_bases CCCCGGCGCCGCTGACCCCGGCCGTGCTGGTTCCGGTCTGCTGGTCCCGGCCGCGCGTTGTGGTGCCCGGTGTCAGCTCA GGTGCCAGTCTCCGCTGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 128; Mature: 127
Protein sequence:
>128_residues MSDSVRELSRQTNLLLSRVRSWTGSSWDVRIPTGETRAARLRTLIDELAMLGRQAGSGAPLGVRPPRVADHALPDQLIVL ADDFLDAVTSADRSAAPGRKADLMGRALTAVSTARNDLDGPGFGFRPR
Sequences:
>Translated_128_residues MSDSVRELSRQTNLLLSRVRSWTGSSWDVRIPTGETRAARLRTLIDELAMLGRQAGSGAPLGVRPPRVADHALPDQLIVL ADDFLDAVTSADRSAAPGRKADLMGRALTAVSTARNDLDGPGFGFRPR >Mature_127_residues SDSVRELSRQTNLLLSRVRSWTGSSWDVRIPTGETRAARLRTLIDELAMLGRQAGSGAPLGVRPPRVADHALPDQLIVLA DDFLDAVTSADRSAAPGRKADLMGRALTAVSTARNDLDGPGFGFRPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13779; Mature: 13648
Theoretical pI: Translated: 11.38; Mature: 11.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSVRELSRQTNLLLSRVRSWTGSSWDVRIPTGETRAARLRTLIDELAMLGRQAGSGAP CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC LGVRPPRVADHALPDQLIVLADDFLDAVTSADRSAAPGRKADLMGRALTAVSTARNDLDG CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC PGFGFRPR CCCCCCCC >Mature Secondary Structure SDSVRELSRQTNLLLSRVRSWTGSSWDVRIPTGETRAARLRTLIDELAMLGRQAGSGAP CHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC LGVRPPRVADHALPDQLIVLADDFLDAVTSADRSAAPGRKADLMGRALTAVSTARNDLDG CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC PGFGFRPR CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA