Definition Frankia sp. EAN1pec chromosome, complete genome.
Accession NC_009921
Length 8,982,042

Click here to switch to the map view.

The map label for this gene is 158312648

Identifier: 158312648

GI number: 158312648

Start: 922916

End: 924508

Strand: Direct

Name: 158312648

Synonym: Franean1_0792

Alternate gene names: NA

Gene position: 922916-924508 (Clockwise)

Preceding gene: 158312647

Following gene: 158312651

Centisome position: 10.28

GC content: 71.81

Gene sequence:

>1593_bases
ATGAGCCGCTCCTCTCAGCAGGGCACGGAGTCCGGCCGGGCCCCATCAGCCCCGTCGCTGATCCGCATCCTGAAGCCGCG
GTGGATGGTGATCGCCATCTCGGTGGTCATCCTGGCCGCGCTGGCGATGATCATATCCAAGCAGCAGGCGGCGACGTTCC
AGGCGAGTTCGCGCATCTTCCTGGACACCTCGGACCAGACCCTTGGCGCGAACTCGGTCGACGCGGGCCGCTTCGTGCAG
ACCCAGGCCCAGCTCGCGACCTCGACAGCGACTCTGGACGAGATCGCTGCCAAGCTGAAGATCACCCGGGCTGACGTCGC
GGACCGCCTGACGACGACCCCGTCGGACGAGGGGTACTTCTTCACGATCACCGGTACCGGCACCAGCGAGCAGGCCGCGA
TCGACTTCGTCAACGCCGCGACGGCCGCCTACACCTCCCAGCTCGGGAAGTCCGGCGCCGGTGACGAGACGTTGGTCGAC
ACGCTCACCAGGATCCGGAACGAGAAGGCAACCCAGCTCCAGGGCCTCGACCAGCAGGCCCAGACCCAGGAAGGCGGGGC
ATCGGACCCCGGGCTGACGAACCAGCGTCTCGTGCTCCAGGACGAGGTGAAGGCGCTCAACACCCGGATCACCGAGGCTG
GTGTGAACGTCGCCGCGGCGCCCACCACGATCCGGCTCGCCGAACCGTCGCGGTCGGAGGGTCAGGTCGCGCCGAGCCTG
TTCCGTAACGTCCTCGTCGCCGCGTTGCTCGGTCTGTTCGGCTCCGCGGCCGGGCTCTGGATCATGTACCAGCGGCGCCC
GACCATCCTCGACCCGCACAACTCGGCGGACCTGATGGGCGTGCCGCTCATCGCGGACCTGCCGGCGAGCCGGACGAGCG
CGAACGCGGCGGAGACACTGGTATCGGCCATGTCGGCGGTGATGTCACCCACCAGCAAGGTGGTGGCCTTCACCCCGGCG
TCCCGGACGGACCTCAGTTCCGAGCTGGTCGCCGCCGTCGCCGCCGCCTGGTCGGACGACCAGGGCGTGGTGCTGATCCT
CGACACCTCGGCGCAGTCGGAGGTCCGCGCGTCGCTGGAGGGGCTGCCCCGGCCCACCTCGGCCGAGCTGCCCCGCTGGG
CGCACGAGCCGACCTGCCTGGCCCGCTCCTCGGGGACGGGCCGCGGCCACATCCTCTACAACCGGGTCTCGCCGGCCCGG
GCCGCCCGCCCGGGGGGCCTCGCGCCCATCCTGGCCGACCGCGCGCCTGTGGTGGACCTCGTCATCCTCGTCACCGCCGC
GCTCGCGGACCTGCCGATGACCGCCGCCTCGGCGATCCAGGCGGACGCCGTCGTCGTCATCACCTCACCCGACACCAACC
TCAAGGAGCTCGAGCAGGTGCCGCGCGACTGGCCGGCCCTGGCCGAGCGGGTCGTGGGTGTCGTGCACGACGGCCGCACC
GCGGTGCGCCGCAACGCGGGTGGCGGGCGCGGCTCGTCGCAGGCCGCGGTCGAGTCGATCACCTCCGCCTCACCGGTGGG
CGGCGAGGCGGCCAGCCGCGCCCCCCGTGACACCGAGGCAACGGACCGCTACGCGCGTCCCGCGAAGCGCTGA

Upstream 100 bases:

>100_bases
CTCCGCTTCACCTGCCGCCCAAAGGGCTTGCGTCAGCGTTCGCCCAGCTGCGGCTGACCGGCACCTCGCCACGCGCCTGG
CGCCCTGAGGCGGGCGCCGC

Downstream 100 bases:

>100_bases
GTCAGGCACTGACGGCAGCAGGCAACACAGACACCACAGAGCCGGCCGCCGCCCCGAGGTACGAAGGACGGGCGGCGGTC
AGGCCCCGCCAGGCACGGCA

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: Lipopolysaccharide Biosynthesis

Number of amino acids: Translated: 530; Mature: 529

Protein sequence:

>530_residues
MSRSSQQGTESGRAPSAPSLIRILKPRWMVIAISVVILAALAMIISKQQAATFQASSRIFLDTSDQTLGANSVDAGRFVQ
TQAQLATSTATLDEIAAKLKITRADVADRLTTTPSDEGYFFTITGTGTSEQAAIDFVNAATAAYTSQLGKSGAGDETLVD
TLTRIRNEKATQLQGLDQQAQTQEGGASDPGLTNQRLVLQDEVKALNTRITEAGVNVAAAPTTIRLAEPSRSEGQVAPSL
FRNVLVAALLGLFGSAAGLWIMYQRRPTILDPHNSADLMGVPLIADLPASRTSANAAETLVSAMSAVMSPTSKVVAFTPA
SRTDLSSELVAAVAAAWSDDQGVVLILDTSAQSEVRASLEGLPRPTSAELPRWAHEPTCLARSSGTGRGHILYNRVSPAR
AARPGGLAPILADRAPVVDLVILVTAALADLPMTAASAIQADAVVVITSPDTNLKELEQVPRDWPALAERVVGVVHDGRT
AVRRNAGGGRGSSQAAVESITSASPVGGEAASRAPRDTEATDRYARPAKR

Sequences:

>Translated_530_residues
MSRSSQQGTESGRAPSAPSLIRILKPRWMVIAISVVILAALAMIISKQQAATFQASSRIFLDTSDQTLGANSVDAGRFVQ
TQAQLATSTATLDEIAAKLKITRADVADRLTTTPSDEGYFFTITGTGTSEQAAIDFVNAATAAYTSQLGKSGAGDETLVD
TLTRIRNEKATQLQGLDQQAQTQEGGASDPGLTNQRLVLQDEVKALNTRITEAGVNVAAAPTTIRLAEPSRSEGQVAPSL
FRNVLVAALLGLFGSAAGLWIMYQRRPTILDPHNSADLMGVPLIADLPASRTSANAAETLVSAMSAVMSPTSKVVAFTPA
SRTDLSSELVAAVAAAWSDDQGVVLILDTSAQSEVRASLEGLPRPTSAELPRWAHEPTCLARSSGTGRGHILYNRVSPAR
AARPGGLAPILADRAPVVDLVILVTAALADLPMTAASAIQADAVVVITSPDTNLKELEQVPRDWPALAERVVGVVHDGRT
AVRRNAGGGRGSSQAAVESITSASPVGGEAASRAPRDTEATDRYARPAKR
>Mature_529_residues
SRSSQQGTESGRAPSAPSLIRILKPRWMVIAISVVILAALAMIISKQQAATFQASSRIFLDTSDQTLGANSVDAGRFVQT
QAQLATSTATLDEIAAKLKITRADVADRLTTTPSDEGYFFTITGTGTSEQAAIDFVNAATAAYTSQLGKSGAGDETLVDT
LTRIRNEKATQLQGLDQQAQTQEGGASDPGLTNQRLVLQDEVKALNTRITEAGVNVAAAPTTIRLAEPSRSEGQVAPSLF
RNVLVAALLGLFGSAAGLWIMYQRRPTILDPHNSADLMGVPLIADLPASRTSANAAETLVSAMSAVMSPTSKVVAFTPAS
RTDLSSELVAAVAAAWSDDQGVVLILDTSAQSEVRASLEGLPRPTSAELPRWAHEPTCLARSSGTGRGHILYNRVSPARA
ARPGGLAPILADRAPVVDLVILVTAALADLPMTAASAIQADAVVVITSPDTNLKELEQVPRDWPALAERVVGVVHDGRTA
VRRNAGGGRGSSQAAVESITSASPVGGEAASRAPRDTEATDRYARPAKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55367; Mature: 55236

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSSQQGTESGRAPSAPSLIRILKPRWMVIAISVVILAALAMIISKQQAATFQASSRIF
CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LDTSDQTLGANSVDAGRFVQTQAQLATSTATLDEIAAKLKITRADVADRLTTTPSDEGYF
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
FTITGTGTSEQAAIDFVNAATAAYTSQLGKSGAGDETLVDTLTRIRNEKATQLQGLDQQA
EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCHHH
QTQEGGASDPGLTNQRLVLQDEVKALNTRITEAGVNVAAAPTTIRLAEPSRSEGQVAPSL
HHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCCCHHH
FRNVLVAALLGLFGSAAGLWIMYQRRPTILDPHNSADLMGVPLIADLPASRTSANAAETL
HHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCCCCCEEECCCCCCCCHHHHHHH
VSAMSAVMSPTSKVVAFTPASRTDLSSELVAAVAAAWSDDQGVVLILDTSAQSEVRASLE
HHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHH
GLPRPTSAELPRWAHEPTCLARSSGTGRGHILYNRVSPARAARPGGLAPILADRAPVVDL
CCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCHHHCCCCCCCHHHHCCCCHHHH
VILVTAALADLPMTAASAIQADAVVVITSPDTNLKELEQVPRDWPALAERVVGVVHDGRT
HHHHHHHHHHCCHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHH
AVRRNAGGGRGSSQAAVESITSASPVGGEAASRAPRDTEATDRYARPAKR
HHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHCCCCCC
>Mature Secondary Structure 
SRSSQQGTESGRAPSAPSLIRILKPRWMVIAISVVILAALAMIISKQQAATFQASSRIF
CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LDTSDQTLGANSVDAGRFVQTQAQLATSTATLDEIAAKLKITRADVADRLTTTPSDEGYF
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
FTITGTGTSEQAAIDFVNAATAAYTSQLGKSGAGDETLVDTLTRIRNEKATQLQGLDQQA
EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCHHH
QTQEGGASDPGLTNQRLVLQDEVKALNTRITEAGVNVAAAPTTIRLAEPSRSEGQVAPSL
HHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCCCHHH
FRNVLVAALLGLFGSAAGLWIMYQRRPTILDPHNSADLMGVPLIADLPASRTSANAAETL
HHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCCCCCEEECCCCCCCCHHHHHHH
VSAMSAVMSPTSKVVAFTPASRTDLSSELVAAVAAAWSDDQGVVLILDTSAQSEVRASLE
HHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHH
GLPRPTSAELPRWAHEPTCLARSSGTGRGHILYNRVSPARAARPGGLAPILADRAPVVDL
CCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCHHHCCCCCCCHHHHCCCCHHHH
VILVTAALADLPMTAASAIQADAVVVITSPDTNLKELEQVPRDWPALAERVVGVVHDGRT
HHHHHHHHHHCCHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHH
AVRRNAGGGRGSSQAAVESITSASPVGGEAASRAPRDTEATDRYARPAKR
HHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA