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The map label for this gene is ycfH [H]

Identifier: 158312622

GI number: 158312622

Start: 891866

End: 892690

Strand: Direct

Name: ycfH [H]

Synonym: Franean1_0766

Alternate gene names: 158312622

Gene position: 891866-892690 (Clockwise)

Preceding gene: 158312619

Following gene: 158312623

Centisome position: 9.93

GC content: 74.3

Gene sequence:

>825_bases
GTGGCGAGGAACTCCGGACGCGTCGGTGACCCTCCACCGCCGCCCGAGCCGCTGCCCGTCCCGGCGGTCGACGCGCACTG
CCATCTCGACCTGATGGGCACTCCGGTGGCCGAGGCCATCGCCGCGGCCCGCGCGGTCGGCATCGACCGGATGGTCTCCG
TCGGCGTCGACCTGCCGACCAGTCGCTGGCAGGCTGAGACCGCCGCGGCCAACCCGGAGGTCCGCGCGGCGGTGGCGATC
CATCCCAACGCGGCCGCGAACGGGGTCGGCGAGGAGACGTTCGAGGCGATCGCGGCGCTCGCCCGCCTGGACGGTGTCGG
CGCGGTCGGCGAGACCGGGCTCGACTACTACCGCACCCCCCCGGAGCAGCACGCCGCCCAGCAGGCGAGCTTCCGCCGGC
ACATCGCCATCGCCAAGGAGACCGGCCGGGCCCTGATGATCCACGACCGGGAGGCGCACGACGACACGTTGCGCATCCTG
GCCGAGGAGGGCGCGCCCGAGCGGGTCGTGTTCCACGCCTTCTCCGGCGACGCGGAGATGGCCAAGATCTGCGCCGATGC
CGGGTACGTGATGTCCTTCGCCGGCAACGTCACCTTCAAGAACGCCCAGGAGCTGCGCGACGCCGCCGCGGTGGTGCCCG
CCGAGCTCCTGCTGGTCGAGACCGACGCGCCGTACCTCACCCCGGTCCCGTGGCGCGGGCGGCCCGGCGGCCCGTATCTG
GTGCCGCTCACCCTGCGGCTGCTGGCACAGACCCGCGGCGAGGCCGTCGACGAGCTCGCCGCCCAGGTCGCCGCCAACGC
GGAACGGACGTTCGGGCCCTGGTAG

Upstream 100 bases:

>100_bases
CGTGATCTTCGTGCCGTGTCGTGCCGTGTCCTGCGGTGGCGTCATCGGGTGCGCCTTCGGGTGTGTCCTCGAGTGTGTCT
TCGGGTGAAGGAGCGAACGG

Downstream 100 bases:

>100_bases
AGATCGAGGCGCTGCTCTCGCCGGCCGACATCCGGGAGCTCGCCCACGCCCTTGACCTGCGGCCGACGAAGCGCAGGGGC
CAGAACTTCCTGGTGGATCC

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MARNSGRVGDPPPPPEPLPVPAVDAHCHLDLMGTPVAEAIAAARAVGIDRMVSVGVDLPTSRWQAETAAANPEVRAAVAI
HPNAAANGVGEETFEAIAALARLDGVGAVGETGLDYYRTPPEQHAAQQASFRRHIAIAKETGRALMIHDREAHDDTLRIL
AEEGAPERVVFHAFSGDAEMAKICADAGYVMSFAGNVTFKNAQELRDAAAVVPAELLLVETDAPYLTPVPWRGRPGGPYL
VPLTLRLLAQTRGEAVDELAAQVAANAERTFGPW

Sequences:

>Translated_274_residues
MARNSGRVGDPPPPPEPLPVPAVDAHCHLDLMGTPVAEAIAAARAVGIDRMVSVGVDLPTSRWQAETAAANPEVRAAVAI
HPNAAANGVGEETFEAIAALARLDGVGAVGETGLDYYRTPPEQHAAQQASFRRHIAIAKETGRALMIHDREAHDDTLRIL
AEEGAPERVVFHAFSGDAEMAKICADAGYVMSFAGNVTFKNAQELRDAAAVVPAELLLVETDAPYLTPVPWRGRPGGPYL
VPLTLRLLAQTRGEAVDELAAQVAANAERTFGPW
>Mature_273_residues
ARNSGRVGDPPPPPEPLPVPAVDAHCHLDLMGTPVAEAIAAARAVGIDRMVSVGVDLPTSRWQAETAAANPEVRAAVAIH
PNAAANGVGEETFEAIAALARLDGVGAVGETGLDYYRTPPEQHAAQQASFRRHIAIAKETGRALMIHDREAHDDTLRILA
EEGAPERVVFHAFSGDAEMAKICADAGYVMSFAGNVTFKNAQELRDAAAVVPAELLLVETDAPYLTPVPWRGRPGGPYLV
PLTLRLLAQTRGEAVDELAAQVAANAERTFGPW

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=272, Percent_Identity=28.3088235294118, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI110349734, Length=171, Percent_Identity=29.8245614035088, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI110349730, Length=171, Percent_Identity=29.2397660818713, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI226061853, Length=179, Percent_Identity=29.0502793296089, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI1787342, Length=255, Percent_Identity=40, Blast_Score=161, Evalue=3e-41,
Organism=Escherichia coli, GI48994985, Length=247, Percent_Identity=32.3886639676113, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI87082439, Length=254, Percent_Identity=28.3464566929134, Blast_Score=91, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71980746, Length=266, Percent_Identity=26.6917293233083, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17559024, Length=192, Percent_Identity=29.6875, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24648690, Length=265, Percent_Identity=26.0377358490566, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28995; Mature: 28864

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARNSGRVGDPPPPPEPLPVPAVDAHCHLDLMGTPVAEAIAAARAVGIDRMVSVGVDLPT
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC
SRWQAETAAANPEVRAAVAIHPNAAANGVGEETFEAIAALARLDGVGAVGETGLDYYRTP
CCCCCHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PEQHAAQQASFRRHIAIAKETGRALMIHDREAHDDTLRILAEEGAPERVVFHAFSGDAEM
HHHHHHHHHHHHHHEEEEECCCCEEEEECCCCCCHHHHHEECCCCCCEEEEEEECCCHHH
AKICADAGYVMSFAGNVTFKNAQELRDAAAVVPAELLLVETDAPYLTPVPWRGRPGGPYL
HHHHHCCCCEEHHCCCCEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCEE
VPLTLRLLAQTRGEAVDELAAQVAANAERTFGPW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ARNSGRVGDPPPPPEPLPVPAVDAHCHLDLMGTPVAEAIAAARAVGIDRMVSVGVDLPT
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC
SRWQAETAAANPEVRAAVAIHPNAAANGVGEETFEAIAALARLDGVGAVGETGLDYYRTP
CCCCCHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PEQHAAQQASFRRHIAIAKETGRALMIHDREAHDDTLRILAEEGAPERVVFHAFSGDAEM
HHHHHHHHHHHHHHEEEEECCCCEEEEECCCCCCHHHHHEECCCCCCEEEEEEECCCHHH
AKICADAGYVMSFAGNVTFKNAQELRDAAAVVPAELLLVETDAPYLTPVPWRGRPGGPYL
HHHHHCCCCEEHHCCCCEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCEE
VPLTLRLLAQTRGEAVDELAAQVAANAERTFGPW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]