| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is ygfF [C]
Identifier: 158312478
GI number: 158312478
Start: 721716
End: 722495
Strand: Direct
Name: ygfF [C]
Synonym: Franean1_0621
Alternate gene names: 158312478
Gene position: 721716-722495 (Clockwise)
Preceding gene: 158312477
Following gene: 158312479
Centisome position: 8.04
GC content: 72.95
Gene sequence:
>780_bases ATGATGCTCGAAGGCAAGATCGCCGTGGTGATGGGCGCCGGCTCAGGGGTCGGCCGCGCCTCGGCACTGCGGTTCGCCGA GGAGGGCGCCCGGGTGCTGTGCGCCGACATCCGGCCCGAGGGGATCAAGGAGACGGCGGCCGCGATCGAGGCGGCCGGCG GCACCGCGGCGGCAGCCGAGTGCGACGTCTCGAAGGAGGCCGACGTGGCCGCCGCGATCGGGGCGGCCGTGGCGCAGTTC GGCCGGATCGACATCGTCTTCAACAACGTCGGCGTCCCGACCCCGCGGCTGGGCGCGAAGCTGGAGGACCACACCGCCGA GGATTTCCAGCGGCTGGTCGCGGTCAACTTCGGGGGCGTGTTCAACGGCTGCAAGCAGGCCGTCCTGCAGTTCAAGCGGC AGGGCGGCGGCGGGGCGATCCTCAACACCGGGTCGGTCGCCGGCCTCGTCGCCTGGGGCGGCTCCGTCTACGGCGCCACC AAGGGCGCGGTGCACCAGCTGACCCGCGCGGTGGCCATCGAGGGCGCGCCGTTCGGCATCCGGGCGAACGCGATCTGCCC GGCCGGGATGCCGCACACCAACTTCATGGCCGCCGGCGGGCTCACCATCTCGGGGGACGCCCGGGAGAAGATGGTGGAGA ACGTCGGGGCCACCCATCCGCTCGGCCGCCCGATCACGGCCGAGGACTGCGCCGAGGCCGCCGTCTACCTGGTCTCCGAC CGCGCGCTCAACATCACCGGTGTGCTGCTGCCGGTCGACGGCGGATACGTGGCGAGGTGA
Upstream 100 bases:
>100_bases CCGTCGAGTCGTGCCCGACCGGCGCGCTGCGCCTGGCGCACGACGCGGGCCTGGCGCAGAACACAGGCCTGGCGCAGGAC GGAACAGGAGCGTGACGAGC
Downstream 100 bases:
>100_bases CCCGATGAGCACCACCGCCACCCTCGACCGCGAACGGGTCCGGCAGCTGTTCGACCTGCGCAGCAGCTACAACGTGCACA TGGGCGGCGGCTACCGGCAG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MMLEGKIAVVMGAGSGVGRASALRFAEEGARVLCADIRPEGIKETAAAIEAAGGTAAAAECDVSKEADVAAAIGAAVAQF GRIDIVFNNVGVPTPRLGAKLEDHTAEDFQRLVAVNFGGVFNGCKQAVLQFKRQGGGGAILNTGSVAGLVAWGGSVYGAT KGAVHQLTRAVAIEGAPFGIRANAICPAGMPHTNFMAAGGLTISGDAREKMVENVGATHPLGRPITAEDCAEAAVYLVSD RALNITGVLLPVDGGYVAR
Sequences:
>Translated_259_residues MMLEGKIAVVMGAGSGVGRASALRFAEEGARVLCADIRPEGIKETAAAIEAAGGTAAAAECDVSKEADVAAAIGAAVAQF GRIDIVFNNVGVPTPRLGAKLEDHTAEDFQRLVAVNFGGVFNGCKQAVLQFKRQGGGGAILNTGSVAGLVAWGGSVYGAT KGAVHQLTRAVAIEGAPFGIRANAICPAGMPHTNFMAAGGLTISGDAREKMVENVGATHPLGRPITAEDCAEAAVYLVSD RALNITGVLLPVDGGYVAR >Mature_259_residues MMLEGKIAVVMGAGSGVGRASALRFAEEGARVLCADIRPEGIKETAAAIEAAGGTAAAAECDVSKEADVAAAIGAAVAQF GRIDIVFNNVGVPTPRLGAKLEDHTAEDFQRLVAVNFGGVFNGCKQAVLQFKRQGGGGAILNTGSVAGLVAWGGSVYGAT KGAVHQLTRAVAIEGAPFGIRANAICPAGMPHTNFMAAGGLTISGDAREKMVENVGATHPLGRPITAEDCAEAAVYLVSD RALNITGVLLPVDGGYVAR
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=257, Percent_Identity=30.7392996108949, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI59889578, Length=235, Percent_Identity=33.1914893617021, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI40254992, Length=251, Percent_Identity=33.4661354581673, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI4758504, Length=194, Percent_Identity=34.5360824742268, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI83715985, Length=207, Percent_Identity=32.3671497584541, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI15277342, Length=263, Percent_Identity=29.6577946768061, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI31542939, Length=258, Percent_Identity=28.2945736434109, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI5031737, Length=261, Percent_Identity=29.1187739463602, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI7705925, Length=259, Percent_Identity=30.1158301158301, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI4504505, Length=244, Percent_Identity=31.1475409836066, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=26.4367816091954, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI10190704, Length=260, Percent_Identity=29.2307692307692, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI126723750, Length=262, Percent_Identity=27.8625954198473, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI109715829, Length=244, Percent_Identity=31.5573770491803, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI126723191, Length=208, Percent_Identity=27.8846153846154, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI66933014, Length=260, Percent_Identity=30.3846153846154, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI33667109, Length=245, Percent_Identity=27.7551020408163, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI210032110, Length=190, Percent_Identity=28.9473684210526, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI224922801, Length=177, Percent_Identity=29.3785310734463, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI40807363, Length=188, Percent_Identity=31.9148936170213, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI2367175, Length=254, Percent_Identity=34.251968503937, Blast_Score=110, Evalue=6e-26, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=33.8582677165354, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=33.976833976834, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1787905, Length=257, Percent_Identity=29.9610894941634, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1789208, Length=262, Percent_Identity=32.0610687022901, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1787335, Length=256, Percent_Identity=31.640625, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI1788459, Length=255, Percent_Identity=29.0196078431373, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87082160, Length=262, Percent_Identity=29.0076335877863, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789378, Length=260, Percent_Identity=27.3076923076923, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787820, Length=258, Percent_Identity=28.6821705426357, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1790717, Length=262, Percent_Identity=27.0992366412214, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789057, Length=262, Percent_Identity=27.0992366412214, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=33.0708661417323, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=29.9625468164794, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=32.0158102766798, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=30.9433962264151, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=31.3953488372093, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=30.3370786516854, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=32.3308270676692, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=32.8301886792453, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=31.6981132075472, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17562990, Length=266, Percent_Identity=32.3308270676692, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI25147288, Length=258, Percent_Identity=30.6201550387597, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=30.3030303030303, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=30.4832713754647, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17564282, Length=265, Percent_Identity=29.811320754717, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17555706, Length=257, Percent_Identity=30.7392996108949, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17560676, Length=259, Percent_Identity=27.4131274131274, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=29.8850574712644, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17562906, Length=270, Percent_Identity=29.2592592592593, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17531453, Length=270, Percent_Identity=27.4074074074074, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=28.6259541984733, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=26.1363636363636, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=31.4393939393939, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17536025, Length=266, Percent_Identity=27.8195488721804, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=29.0566037735849, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=28.5185185185185, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17568967, Length=197, Percent_Identity=31.4720812182741, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193203117, Length=253, Percent_Identity=26.8774703557312, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193203115, Length=248, Percent_Identity=28.2258064516129, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=25.6809338521401, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=30.5660377358491, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17508895, Length=204, Percent_Identity=26.4705882352941, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17561272, Length=266, Percent_Identity=29.6992481203008, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17538182, Length=196, Percent_Identity=31.1224489795918, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567345, Length=193, Percent_Identity=28.4974093264249, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71982365, Length=198, Percent_Identity=29.2929292929293, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=250, Percent_Identity=29.2, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=247, Percent_Identity=28.7449392712551, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=32.258064516129, Blast_Score=73, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=26.7441860465116, Blast_Score=72, Evalue=9e-14, Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=36.4705882352941, Blast_Score=138, Evalue=3e-33, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=34.9019607843137, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=33.0739299610895, Blast_Score=127, Evalue=1e-29, Organism=Drosophila melanogaster, GI23397609, Length=257, Percent_Identity=34.2412451361868, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI17737361, Length=232, Percent_Identity=31.4655172413793, Blast_Score=92, Evalue=2e-19, Organism=Drosophila melanogaster, GI21355319, Length=259, Percent_Identity=31.2741312741313, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24639444, Length=259, Percent_Identity=30.8880308880309, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI18859837, Length=197, Percent_Identity=35.5329949238579, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24643142, Length=256, Percent_Identity=28.515625, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI281364892, Length=223, Percent_Identity=31.8385650224215, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI24644337, Length=119, Percent_Identity=42.0168067226891, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24640492, Length=163, Percent_Identity=30.0613496932515, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24665243, Length=205, Percent_Identity=31.7073170731707, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI221331218, Length=205, Percent_Identity=31.7073170731707, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI21357673, Length=205, Percent_Identity=30.2439024390244, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26157; Mature: 26157
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLEGKIAVVMGAGSGVGRASALRFAEEGARVLCADIRPEGIKETAAAIEAAGGTAAAAE CEECCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEE CDVSKEADVAAAIGAAVAQFGRIDIVFNNVGVPTPRLGAKLEDHTAEDFQRLVAVNFGGV CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHH FNGCKQAVLQFKRQGGGGAILNTGSVAGLVAWGGSVYGATKGAVHQLTRAVAIEGAPFGI HHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCEECCCCHHHHHHHHHHHEECCCCCCE RANAICPAGMPHTNFMAAGGLTISGDAREKMVENVGATHPLGRPITAEDCAEAAVYLVSD EECCCCCCCCCCCCEEEECCEEEECHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEEEEC RALNITGVLLPVDGGYVAR CEEEEEEEEEECCCCCCCC >Mature Secondary Structure MMLEGKIAVVMGAGSGVGRASALRFAEEGARVLCADIRPEGIKETAAAIEAAGGTAAAAE CEECCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEE CDVSKEADVAAAIGAAVAQFGRIDIVFNNVGVPTPRLGAKLEDHTAEDFQRLVAVNFGGV CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHH FNGCKQAVLQFKRQGGGGAILNTGSVAGLVAWGGSVYGATKGAVHQLTRAVAIEGAPFGI HHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCEECCCCHHHHHHHHHHHEECCCCCCE RANAICPAGMPHTNFMAAGGLTISGDAREKMVENVGATHPLGRPITAEDCAEAAVYLVSD EECCCCCCCCCCCCEEEECCEEEECHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEEEEC RALNITGVLLPVDGGYVAR CEEEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]