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The map label for this gene is deoR [H]

Identifier: 158312273

GI number: 158312273

Start: 487891

End: 488895

Strand: Direct

Name: deoR [H]

Synonym: Franean1_0409

Alternate gene names: 158312273

Gene position: 487891-488895 (Clockwise)

Preceding gene: 158312272

Following gene: 158312278

Centisome position: 5.43

GC content: 71.24

Gene sequence:

>1005_bases
ATGCGCGCGAGCCCTGACCGCGATCGCCTGCGGCTGCTGACCAAGGTGGCGCGCCTGTACCACGAACAGGGCGTCCGGCA
ACCGGAGATCGCTGAACGGCTCAACCTGTCTCAGGCCCGTGTCTCCCGGCTCCTCAAGGAGGCGTCCGAGCTGGGGATCG
TCCGCACGATCATCGTCCCGCCGCCCGGCGTGCATGCCGACATCGAGGACGAGCTCATCCGGCGGTACGGGCTCCGGGAC
GTCATGGTGGTCGACGTCGAGGGCAGCGCGGGCGACATCACGGCGGCTCTCGGTGCCAGCGGCGCGACCTATCTGGACAT
GACGCTGCAGAACGACGACGTCATCGGCGTCTCGTCGTGGAGCGCCACCTTGCTCGCCGCGGTCGACGCCATGCGTCCCC
GACACACCCTGAATGCCCGTCAGGTCATCCAGCTGATGGGCGGCGTCGGTAGCCCCGACGCGCAGATGCAGGCGACCCGC
CTCACCGGGCGGCTCGCCACACTCACCGGAGCCGCTCCGCTGTTCGTGCCGTCGCCCGGCCTGGTCGGGTCGGCCACACT
CCAGCAGGCCCTGCTCACGGACCCGGCGGTCCAGACGGTTCGGGAAGTCTGGTCCGAGCTCACCGTGGCACTGGTCGGCA
TCGGCACCACGACGCCCTCGCCCCTGCTGCGCCAGAGCGGGAACGGGCTGTCCGACGCCGACCAGCGGACACTGCGCGAC
GCCGGCGCGGTCGGGGACGTCTGCCTGCGGTACTTCGACGAGGCCGGACAGCCGGTCGTGGCAGACCTCGACCAGCGGAT
CATCGGCATCGACCGGGAGACGTTGCTCGGCACCGCGCGCCGCATCGCCATCGCCGGCGGGCAGGAAAAAGCGACCGCCA
TCCGGGCGGCGGTGCTGGGCCGCTGGGTGAACATCCTCATCACGGACCTCGGCGTAGCTGGCCACCTGCTCGGCGCGCCG
CCATCCGGGCCGTCAGCGGACCGGGAGTCGGTCGACCACCGCTGA

Upstream 100 bases:

>100_bases
CGCGCGTTCCCACCAGCGCACGAAGGCAGCGTCATGACCGGCGACGCGGCGTCCGCCGGCCGCGTCGCCGCGGACGGGCA
GAACATACTGGTGCATGGCC

Downstream 100 bases:

>100_bases
CGACTCAGGGGCGGCGACCGGTGCCGATGTCCCCGACGAGCTTCTCGCCGGGGCGGGTGGCGGTGAAGTCGCGGCGGACG
TGGTCGGCGGGCGCCGGGGC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MRASPDRDRLRLLTKVARLYHEQGVRQPEIAERLNLSQARVSRLLKEASELGIVRTIIVPPPGVHADIEDELIRRYGLRD
VMVVDVEGSAGDITAALGASGATYLDMTLQNDDVIGVSSWSATLLAAVDAMRPRHTLNARQVIQLMGGVGSPDAQMQATR
LTGRLATLTGAAPLFVPSPGLVGSATLQQALLTDPAVQTVREVWSELTVALVGIGTTTPSPLLRQSGNGLSDADQRTLRD
AGAVGDVCLRYFDEAGQPVVADLDQRIIGIDRETLLGTARRIAIAGGQEKATAIRAAVLGRWVNILITDLGVAGHLLGAP
PSGPSADRESVDHR

Sequences:

>Translated_334_residues
MRASPDRDRLRLLTKVARLYHEQGVRQPEIAERLNLSQARVSRLLKEASELGIVRTIIVPPPGVHADIEDELIRRYGLRD
VMVVDVEGSAGDITAALGASGATYLDMTLQNDDVIGVSSWSATLLAAVDAMRPRHTLNARQVIQLMGGVGSPDAQMQATR
LTGRLATLTGAAPLFVPSPGLVGSATLQQALLTDPAVQTVREVWSELTVALVGIGTTTPSPLLRQSGNGLSDADQRTLRD
AGAVGDVCLRYFDEAGQPVVADLDQRIIGIDRETLLGTARRIAIAGGQEKATAIRAAVLGRWVNILITDLGVAGHLLGAP
PSGPSADRESVDHR
>Mature_334_residues
MRASPDRDRLRLLTKVARLYHEQGVRQPEIAERLNLSQARVSRLLKEASELGIVRTIIVPPPGVHADIEDELIRRYGLRD
VMVVDVEGSAGDITAALGASGATYLDMTLQNDDVIGVSSWSATLLAAVDAMRPRHTLNARQVIQLMGGVGSPDAQMQATR
LTGRLATLTGAAPLFVPSPGLVGSATLQQALLTDPAVQTVREVWSELTVALVGIGTTTPSPLLRQSGNGLSDADQRTLRD
AGAVGDVCLRYFDEAGQPVVADLDQRIIGIDRETLLGTARRIAIAGGQEKATAIRAAVLGRWVNILITDLGVAGHLLGAP
PSGPSADRESVDHR

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=317, Percent_Identity=33.4384858044164, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787791, Length=311, Percent_Identity=29.5819935691318, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35467; Mature: 35467

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASPDRDRLRLLTKVARLYHEQGVRQPEIAERLNLSQARVSRLLKEASELGIVRTIIVP
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEEC
PPGVHADIEDELIRRYGLRDVMVVDVEGSAGDITAALGASGATYLDMTLQNDDVIGVSSW
CCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCHHHHCCCCCEEEEEEECCCCEEEECHH
SATLLAAVDAMRPRHTLNARQVIQLMGGVGSPDAQMQATRLTGRLATLTGAAPLFVPSPG
HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCC
LVGSATLQQALLTDPAVQTVREVWSELTVALVGIGTTTPSPLLRQSGNGLSDADQRTLRD
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHCCCCCCHHHHHHHHH
AGAVGDVCLRYFDEAGQPVVADLDQRIIGIDRETLLGTARRIAIAGGQEKATAIRAAVLG
HCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHEEEECCCHHHHHHHHHHHH
RWVNILITDLGVAGHLLGAPPSGPSADRESVDHR
HHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRASPDRDRLRLLTKVARLYHEQGVRQPEIAERLNLSQARVSRLLKEASELGIVRTIIVP
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEEC
PPGVHADIEDELIRRYGLRDVMVVDVEGSAGDITAALGASGATYLDMTLQNDDVIGVSSW
CCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCHHHHCCCCCEEEEEEECCCCEEEECHH
SATLLAAVDAMRPRHTLNARQVIQLMGGVGSPDAQMQATRLTGRLATLTGAAPLFVPSPG
HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCC
LVGSATLQQALLTDPAVQTVREVWSELTVALVGIGTTTPSPLLRQSGNGLSDADQRTLRD
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHCCCCCCHHHHHHHHH
AGAVGDVCLRYFDEAGQPVVADLDQRIIGIDRETLLGTARRIAIAGGQEKATAIRAAVLG
HCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHEEEECCCHHHHHHHHHHHH
RWVNILITDLGVAGHLLGAPPSGPSADRESVDHR
HHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]