| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is fadD [C]
Identifier: 157963997
GI number: 157963997
Start: 5080306
End: 5082102
Strand: Reverse
Name: fadD [C]
Synonym: Spea_4186
Alternate gene names: 157963997
Gene position: 5082102-5080306 (Counterclockwise)
Preceding gene: 157963998
Following gene: 157963996
Centisome position: 98.21
GC content: 46.02
Gene sequence:
>1797_bases ATGTCGCTCGAGCAATATCACGTAGTACGATTAATACAGCAACAGAGCCAAGCACTTGGCGATGCTATTGCGCTCGAAGG ATTCGAAACTGCAGCGCCTTGGCATCAGGTGAGCTGGAGTCAATTCGATACCATCACCTCTAAAATTGCACGAGTGTTGA TTCAATTTGGTATTGAGTCACAAGACCGCGCAATTATTTTGTCACAGAACTGTCCGCAGTGGACTTGTGCCGATTTAGGC CTATTAAAGGCTAAAGCGATAGTTGTGCCTATCTATCCGACTAGCACAATTGAACAAGCTGCTTACATAGTTAACGATGC CGAAGCGAAATTGATTTTTGCTGGCGACGCTGCTCAGTATGCCATGGCGTGTGATTTGGTTGCCCAGTGTGACAGCCTGA CTCGCGTAGTAGTTTTCGACAAATCTGTTGAACTGCAAGATCTACAAAATCATTTTTATCTAGATGATCTATTGGAGCGC GAAATTGATAGCGCTGCAGATGCTGAACTTGAAAAGCGTTTGAACGATAAGAATTTAGATGATCTACTGACGCTAATTTA CACCTCAGGTACAACGGGTGATCCAAAGGGCGTAATGCTCGATTACCGCAACATTGCTTCTATGGTGCGTCAGCACGACA AATTCTTACCGTTCACACCGGGCGATGTGTCATTGGCATTCTTGCCATTGAGCCACGTATTTGAACGCGGTTGGAGTTTC TACGTTTTATGTCGCGGTGGTCATAACGTTTACCTGTCTAACCCAATGGCAGTGAAAGAGGCGATTGTGCAAGTTCGCCC GCATACTCTATGTGTGGTGCCACGCTTCTTAGAGAAAGTGTATAGCGCCGTGCAAGATAAGGTGATTAAAGCACCAGAGT TGAGACAGAAGATGTTCACTTGGGCCATGTCTGTTGGTCATAAACAGTCTGAAGTCGGTCAAGGTCGTCATAAAGCATCA TTGGGCTTAAACCTACAGTGGAAACTGGCAGATAAGCTGGTTTTCAGTAAATTAAAGCAGGTTTTAGGTGGCCGTCTTAA GTTTATGCCTTGTGGCGGTGCAGCTTTAGATCCAAACGTCAGTGCCTTCTTCCAAAGCATCGATGTCCCAGTGCTATGTG GTTACGGTATGACTGAAACCACTGCAACAACGACCTGTAATACCTTAGGTAACCGTGTGCCAGGCTCTAACGGCCAAGTC ATACCAGAAGCCGAGATTAAGCTGGGTAAAGACAACGAAATTCTAGTACGCGGTGATACCGTAATGCGTGGCTATTTCAA TCGCCCTGAAGAAACTGCCGAAGCATTCGAAGATGGTTGGTTGAAGACGGGTGATGCGGGTCGTATCGACGAAAACGGCA ACCTGTTTATTACAGACCGTATTAAAGAGCTGATGAAAACCTCAAATGGTAAGTATATCGCGCCGCAACGTGTCGAAGGT AAGGTAGGTTGCTGCCCATTCATAGAGCAGGTGGCGATTGTTGCCGATGCGCGTAACTATGTGACAGCCTTGATTGTACC TGCATTTGAGTCATTAGAAGCTTGGGCAAAAGAGAAGGGCGTACATTACGAGTCGCAGCTGGATCTATTGCGTCATACTC ACGTAGTTGAACACTTTGAGCAACGCCTTAAGACTCTGCAAAGCGAGCTAGCTGGCTTTGAAAAGATTAAGAAGTTTACC TTGTTGCCAGATGCTTTCTCTATGGAAGCAGGCCTTATTACCCCAACGATGAAGTTGCGTCGTAAGGTGATTTACAACAA GTACGCTCGTGAAATCGATAAGATGTATAGCCGCTAA
Upstream 100 bases:
>100_bases TTAGTTAACAAAATTAGAGCAAAAACTCTTAGTGTTTATAGTTTCTTCGAGTAAACTTGCGAAAAAGCGGAACACTTGTA AGCTAAAAGGTAGCCATTTT
Downstream 100 bases:
>100_bases TACGCGCTTAACAGGTTGAATAGAAAGGGATGCTTAGGCATCCTTTTTTTGTTTTCAGCCCTAAACCACCTACTTCAGTA GGTGGATCTTTTACTTTTTC
Product: AMP-dependent synthetase and ligase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase; LACS [H]
Number of amino acids: Translated: 598; Mature: 597
Protein sequence:
>598_residues MSLEQYHVVRLIQQQSQALGDAIALEGFETAAPWHQVSWSQFDTITSKIARVLIQFGIESQDRAIILSQNCPQWTCADLG LLKAKAIVVPIYPTSTIEQAAYIVNDAEAKLIFAGDAAQYAMACDLVAQCDSLTRVVVFDKSVELQDLQNHFYLDDLLER EIDSAADAELEKRLNDKNLDDLLTLIYTSGTTGDPKGVMLDYRNIASMVRQHDKFLPFTPGDVSLAFLPLSHVFERGWSF YVLCRGGHNVYLSNPMAVKEAIVQVRPHTLCVVPRFLEKVYSAVQDKVIKAPELRQKMFTWAMSVGHKQSEVGQGRHKAS LGLNLQWKLADKLVFSKLKQVLGGRLKFMPCGGAALDPNVSAFFQSIDVPVLCGYGMTETTATTTCNTLGNRVPGSNGQV IPEAEIKLGKDNEILVRGDTVMRGYFNRPEETAEAFEDGWLKTGDAGRIDENGNLFITDRIKELMKTSNGKYIAPQRVEG KVGCCPFIEQVAIVADARNYVTALIVPAFESLEAWAKEKGVHYESQLDLLRHTHVVEHFEQRLKTLQSELAGFEKIKKFT LLPDAFSMEAGLITPTMKLRRKVIYNKYAREIDKMYSR
Sequences:
>Translated_598_residues MSLEQYHVVRLIQQQSQALGDAIALEGFETAAPWHQVSWSQFDTITSKIARVLIQFGIESQDRAIILSQNCPQWTCADLG LLKAKAIVVPIYPTSTIEQAAYIVNDAEAKLIFAGDAAQYAMACDLVAQCDSLTRVVVFDKSVELQDLQNHFYLDDLLER EIDSAADAELEKRLNDKNLDDLLTLIYTSGTTGDPKGVMLDYRNIASMVRQHDKFLPFTPGDVSLAFLPLSHVFERGWSF YVLCRGGHNVYLSNPMAVKEAIVQVRPHTLCVVPRFLEKVYSAVQDKVIKAPELRQKMFTWAMSVGHKQSEVGQGRHKAS LGLNLQWKLADKLVFSKLKQVLGGRLKFMPCGGAALDPNVSAFFQSIDVPVLCGYGMTETTATTTCNTLGNRVPGSNGQV IPEAEIKLGKDNEILVRGDTVMRGYFNRPEETAEAFEDGWLKTGDAGRIDENGNLFITDRIKELMKTSNGKYIAPQRVEG KVGCCPFIEQVAIVADARNYVTALIVPAFESLEAWAKEKGVHYESQLDLLRHTHVVEHFEQRLKTLQSELAGFEKIKKFT LLPDAFSMEAGLITPTMKLRRKVIYNKYAREIDKMYSR >Mature_597_residues SLEQYHVVRLIQQQSQALGDAIALEGFETAAPWHQVSWSQFDTITSKIARVLIQFGIESQDRAIILSQNCPQWTCADLGL LKAKAIVVPIYPTSTIEQAAYIVNDAEAKLIFAGDAAQYAMACDLVAQCDSLTRVVVFDKSVELQDLQNHFYLDDLLERE IDSAADAELEKRLNDKNLDDLLTLIYTSGTTGDPKGVMLDYRNIASMVRQHDKFLPFTPGDVSLAFLPLSHVFERGWSFY VLCRGGHNVYLSNPMAVKEAIVQVRPHTLCVVPRFLEKVYSAVQDKVIKAPELRQKMFTWAMSVGHKQSEVGQGRHKASL GLNLQWKLADKLVFSKLKQVLGGRLKFMPCGGAALDPNVSAFFQSIDVPVLCGYGMTETTATTTCNTLGNRVPGSNGQVI PEAEIKLGKDNEILVRGDTVMRGYFNRPEETAEAFEDGWLKTGDAGRIDENGNLFITDRIKELMKTSNGKYIAPQRVEGK VGCCPFIEQVAIVADARNYVTALIVPAFESLEAWAKEKGVHYESQLDLLRHTHVVEHFEQRLKTLQSELAGFEKIKKFTL LPDAFSMEAGLITPTMKLRRKVIYNKYAREIDKMYSR
Specific function: Esterification, Concomitant With Transport, Of Exogenous Long-Chain Fatty Acids Into Metabolically Active CoA Thioesters For Subsequent Degradation Or Incorporation Into Phospholipids. [C]
COG id: COG1022
COG function: function code I; Long-chain acyl-CoA synthetases (AMP-forming)
Gene ontology:
Cell location: Partially Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI27477105, Length=629, Percent_Identity=29.2527821939587, Blast_Score=251, Evalue=2e-66, Organism=Homo sapiens, GI40807491, Length=622, Percent_Identity=29.903536977492, Blast_Score=248, Evalue=2e-65, Organism=Homo sapiens, GI42794760, Length=618, Percent_Identity=30.0970873786408, Blast_Score=231, Evalue=2e-60, Organism=Homo sapiens, GI42794758, Length=618, Percent_Identity=30.0970873786408, Blast_Score=231, Evalue=2e-60, Organism=Homo sapiens, GI42794756, Length=618, Percent_Identity=30.0970873786408, Blast_Score=230, Evalue=3e-60, Organism=Homo sapiens, GI57165412, Length=557, Percent_Identity=28.0071813285458, Blast_Score=217, Evalue=3e-56, Organism=Homo sapiens, GI83745141, Length=594, Percent_Identity=27.1043771043771, Blast_Score=216, Evalue=4e-56, Organism=Homo sapiens, GI57165410, Length=558, Percent_Identity=27.9569892473118, Blast_Score=216, Evalue=5e-56, Organism=Homo sapiens, GI12669909, Length=584, Percent_Identity=26.3698630136986, Blast_Score=190, Evalue=3e-48, Organism=Homo sapiens, GI4758332, Length=584, Percent_Identity=26.3698630136986, Blast_Score=189, Evalue=5e-48, Organism=Homo sapiens, GI42794754, Length=606, Percent_Identity=25.7425742574257, Blast_Score=185, Evalue=1e-46, Organism=Homo sapiens, GI42794752, Length=606, Percent_Identity=25.7425742574257, Blast_Score=185, Evalue=1e-46, Organism=Escherichia coli, GI1788107, Length=468, Percent_Identity=24.5726495726496, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI145693145, Length=492, Percent_Identity=25.8130081300813, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1788595, Length=209, Percent_Identity=28.2296650717703, Blast_Score=66, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17556552, Length=560, Percent_Identity=29.8214285714286, Blast_Score=231, Evalue=1e-60, Organism=Caenorhabditis elegans, GI17510401, Length=586, Percent_Identity=29.0102389078498, Blast_Score=224, Evalue=1e-58, Organism=Caenorhabditis elegans, GI17541856, Length=593, Percent_Identity=28.6677908937605, Blast_Score=212, Evalue=4e-55, Organism=Caenorhabditis elegans, GI17553312, Length=642, Percent_Identity=25.2336448598131, Blast_Score=209, Evalue=3e-54, Organism=Caenorhabditis elegans, GI25147511, Length=601, Percent_Identity=27.1214642262895, Blast_Score=207, Evalue=2e-53, Organism=Caenorhabditis elegans, GI17564090, Length=541, Percent_Identity=29.0203327171904, Blast_Score=201, Evalue=6e-52, Organism=Caenorhabditis elegans, GI193204819, Length=622, Percent_Identity=27.0096463022508, Blast_Score=187, Evalue=1e-47, Organism=Caenorhabditis elegans, GI17559526, Length=341, Percent_Identity=29.3255131964809, Blast_Score=117, Evalue=2e-26, Organism=Caenorhabditis elegans, GI32563687, Length=481, Percent_Identity=23.4927234927235, Blast_Score=109, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17531443, Length=469, Percent_Identity=23.8805970149254, Blast_Score=98, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17558820, Length=169, Percent_Identity=31.3609467455621, Blast_Score=92, Evalue=8e-19, Organism=Caenorhabditis elegans, GI133901848, Length=209, Percent_Identity=28.7081339712919, Blast_Score=86, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17560140, Length=132, Percent_Identity=34.0909090909091, Blast_Score=72, Evalue=7e-13, Organism=Caenorhabditis elegans, GI71985884, Length=345, Percent_Identity=25.7971014492754, Blast_Score=70, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17557194, Length=138, Percent_Identity=34.7826086956522, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17538037, Length=137, Percent_Identity=33.5766423357664, Blast_Score=66, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6324893, Length=620, Percent_Identity=26.7741935483871, Blast_Score=178, Evalue=3e-45, Organism=Saccharomyces cerevisiae, GI6320852, Length=647, Percent_Identity=24.2658423493045, Blast_Score=172, Evalue=1e-43, Organism=Saccharomyces cerevisiae, GI6323903, Length=614, Percent_Identity=24.2671009771987, Blast_Score=166, Evalue=7e-42, Organism=Saccharomyces cerevisiae, GI6322182, Length=616, Percent_Identity=24.8376623376623, Blast_Score=161, Evalue=3e-40, Organism=Saccharomyces cerevisiae, GI6319699, Length=165, Percent_Identity=32.1212121212121, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI281366413, Length=597, Percent_Identity=30.3182579564489, Blast_Score=244, Evalue=2e-64, Organism=Drosophila melanogaster, GI24666501, Length=597, Percent_Identity=30.3182579564489, Blast_Score=243, Evalue=2e-64, Organism=Drosophila melanogaster, GI24666497, Length=597, Percent_Identity=30.3182579564489, Blast_Score=243, Evalue=2e-64, Organism=Drosophila melanogaster, GI17933690, Length=638, Percent_Identity=28.0564263322884, Blast_Score=236, Evalue=5e-62, Organism=Drosophila melanogaster, GI19921316, Length=623, Percent_Identity=26.3242375601926, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI62471679, Length=602, Percent_Identity=25.4152823920266, Blast_Score=196, Evalue=5e-50, Organism=Drosophila melanogaster, GI62471683, Length=602, Percent_Identity=25.4152823920266, Blast_Score=196, Evalue=5e-50, Organism=Drosophila melanogaster, GI62471685, Length=602, Percent_Identity=25.4152823920266, Blast_Score=196, Evalue=5e-50, Organism=Drosophila melanogaster, GI24586636, Length=602, Percent_Identity=25.4152823920266, Blast_Score=196, Evalue=5e-50, Organism=Drosophila melanogaster, GI62471681, Length=602, Percent_Identity=25.4152823920266, Blast_Score=196, Evalue=5e-50, Organism=Drosophila melanogaster, GI62471687, Length=602, Percent_Identity=25.4152823920266, Blast_Score=196, Evalue=5e-50, Organism=Drosophila melanogaster, GI24586634, Length=602, Percent_Identity=25.4152823920266, Blast_Score=196, Evalue=5e-50, Organism=Drosophila melanogaster, GI22026970, Length=602, Percent_Identity=25.4152823920266, Blast_Score=196, Evalue=5e-50, Organism=Drosophila melanogaster, GI62471689, Length=602, Percent_Identity=25.4152823920266, Blast_Score=196, Evalue=6e-50, Organism=Drosophila melanogaster, GI18859661, Length=521, Percent_Identity=24.7600767754319, Blast_Score=108, Evalue=9e-24, Organism=Drosophila melanogaster, GI21355181, Length=514, Percent_Identity=24.9027237354086, Blast_Score=100, Evalue=4e-21, Organism=Drosophila melanogaster, GI20130357, Length=204, Percent_Identity=30.3921568627451, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24653035, Length=191, Percent_Identity=31.9371727748691, Blast_Score=69, Evalue=9e-12, Organism=Drosophila melanogaster, GI161076582, Length=206, Percent_Identity=28.1553398058252, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 66944; Mature: 66813
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLEQYHVVRLIQQQSQALGDAIALEGFETAAPWHQVSWSQFDTITSKIARVLIQFGIES CCCHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCC QDRAIILSQNCPQWTCADLGLLKAKAIVVPIYPTSTIEQAAYIVNDAEAKLIFAGDAAQY CCCEEEEECCCCCCHHHHHHHHEEEEEEEEECCCHHHHHHHHHEECCCEEEEEECCHHHH AMACDLVAQCDSLTRVVVFDKSVELQDLQNHFYLDDLLEREIDSAADAELEKRLNDKNLD HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH DLLTLIYTSGTTGDPKGVMLDYRNIASMVRQHDKFLPFTPGDVSLAFLPLSHVFERGWSF HHHHHHEECCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHCCCEE YVLCRGGHNVYLSNPMAVKEAIVQVRPHTLCVVPRFLEKVYSAVQDKVIKAPELRQKMFT EEEEECCCEEEECCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHH WAMSVGHKQSEVGQGRHKASLGLNLQWKLADKLVFSKLKQVLGGRLKFMPCGGAALDPNV HHHHCCCCHHHHCCCCCHHHCCCCEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCH SAFFQSIDVPVLCGYGMTETTATTTCNTLGNRVPGSNGQVIPEAEIKLGKDNEILVRGDT HHHHHHCCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHEEECCCCEEEEECCC VMRGYFNRPEETAEAFEDGWLKTGDAGRIDENGNLFITDRIKELMKTSNGKYIAPQRVEG EEECCCCCCHHHHHHHHCCCEECCCCCCCCCCCCEEEHHHHHHHHHCCCCCEECCCCCCC KVGCCPFIEQVAIVADARNYVTALIVPAFESLEAWAKEKGVHYESQLDLLRHTHVVEHFE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH QRLKTLQSELAGFEKIKKFTLLPDAFSMEAGLITPTMKLRRKVIYNKYAREIDKMYSR HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SLEQYHVVRLIQQQSQALGDAIALEGFETAAPWHQVSWSQFDTITSKIARVLIQFGIES CCHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCC QDRAIILSQNCPQWTCADLGLLKAKAIVVPIYPTSTIEQAAYIVNDAEAKLIFAGDAAQY CCCEEEEECCCCCCHHHHHHHHEEEEEEEEECCCHHHHHHHHHEECCCEEEEEECCHHHH AMACDLVAQCDSLTRVVVFDKSVELQDLQNHFYLDDLLEREIDSAADAELEKRLNDKNLD HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH DLLTLIYTSGTTGDPKGVMLDYRNIASMVRQHDKFLPFTPGDVSLAFLPLSHVFERGWSF HHHHHHEECCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHCCCEE YVLCRGGHNVYLSNPMAVKEAIVQVRPHTLCVVPRFLEKVYSAVQDKVIKAPELRQKMFT EEEEECCCEEEECCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHH WAMSVGHKQSEVGQGRHKASLGLNLQWKLADKLVFSKLKQVLGGRLKFMPCGGAALDPNV HHHHCCCCHHHHCCCCCHHHCCCCEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCH SAFFQSIDVPVLCGYGMTETTATTTCNTLGNRVPGSNGQVIPEAEIKLGKDNEILVRGDT HHHHHHCCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHEEECCCCEEEEECCC VMRGYFNRPEETAEAFEDGWLKTGDAGRIDENGNLFITDRIKELMKTSNGKYIAPQRVEG EEECCCCCCHHHHHHHHCCCEECCCCCCCCCCCCEEEHHHHHHHHHCCCCCEECCCCCCC KVGCCPFIEQVAIVADARNYVTALIVPAFESLEAWAKEKGVHYESQLDLLRHTHVVEHFE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH QRLKTLQSELAGFEKIKKFTLLPDAFSMEAGLITPTMKLRRKVIYNKYAREIDKMYSR HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]