| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is plsB [H]
Identifier: 157963807
GI number: 157963807
Start: 4854636
End: 4857059
Strand: Reverse
Name: plsB [H]
Synonym: Spea_3996
Alternate gene names: 157963807
Gene position: 4857059-4854636 (Counterclockwise)
Preceding gene: 157963819
Following gene: 157963806
Centisome position: 93.86
GC content: 46.78
Gene sequence:
>2424_bases ATGTCCAAACAAGACTCTCTTTGGTTCAAATCTTTACGCTGGTTACAGCGTCAATTAGTTCACACTGTCGTTGTGCCTCA CGACCCATTCGACGATCTCAACTTAGATCCGAGTAAACCACTCGCTTATGTCATGAAGACTGAATCTGTCAGTGACATCG CTGCGCTTAGCGAAATGACGGCGAAACTTGGTTTACCAAGCCCTTACGAGGAGCTGGAGGTCAATGGGGTTAAGGCACCA CGAGTGGTCTGCCTAGAAGGGAGTAAGCCTCTCTTCGGCCAGCGAGAAGGTGGTGAGCAGTACATAGATTGCTTCAAGAG ACTCCTTAGCGTACATAAACAAAATCGCGAATTAGACATTCAATTGGTGCCGGTGAGCCTTTATTGGGGTCGTACCCCTG GTAAAGAAGACGACACTATGCGCGCAGCGGTACTCGAGCGCCAAAACCCAACTTGGTTACGCAAGTGCCTCATGATCTTG TTCTTGGGTCGACATAATTTCGTGCAGTTTTCTAATGCCGTTTCACTGCGTTATATGGCTGATGAGCACGGCACTGATAA GCGTATTGCACAGAAGCTTGCTCGTGTCGCAAGAGTGCACTTTCAGCGCCAACGTAAAGTGATGACTGGGCCTCAGCTGC CTAAGCGTCAGGCACTGTTCCACGCTTTACTTAAATCAGATTCGATTACCAAGGCGATTAAAGAGGAAGCGGCAAGCAAG AAGATCACCGAGGCCGAAGCTCGCGCTAAAGCGATGGAGTACCTTGATGAAGTGGCTGCAGATTACTCCGATAGCCTAGT GCGTATCGCAGAGCGTTTTCTAACGTGGTTGTGGAACAAGCTTTATAAAGGCATCAACATTAAAGGTGCCGAGCAGGTAA GACAGCTGCACCACGACGGACATGAGATTGTCTATGTGCCGTGTCATCGTAGTCATATGGACTACCTGCTACTGTCTTAT ATTCTTTATTATCAAGGTATGGTACCGCCGCATATCGCAGCGGGTATTAACCTTAATTTCTGGCCTGCGGGTCCTGCGTT CCGCCGTGGTGGTGCTTTCTTTATTCGTCGTAGTTTTGGTGGCAACAAGCTTTACACTGCCGTGTTCCGTGAATATTTAG ATCAGCTATTTACCAAAGGCTATTCTGTAGAGTACTTCACAGAAGGTGGCCGTTCGCGTACAGGTCGTCTGCTGGCGCCG AAAACGGGAATGCTCGCTATGACCCTAAACAGTGTGCTGCGTGGTGTTGAACGCCCAGTGACGCTAGTGCCAGTGTATTT AGGCTATGACCATGTAATGGAAGTGGCGACTTACCATAAAGAGTTGAGCGGAAAGAAGAAAAAGAAAGAGTCAGTTTGGC AGGTATTTGGCGCCATTCGTAAGCTAGGCAACTTTGGCCAAGGTTACGTTAACTTCGGTGAGCCGATCACCTTGCATAAC TTCTTGAACGAGCAGGCTCCTAGCTGGCGTGAAGATATAGCTAAAGACCCAGACCAAAAGCCTAGCTGGTTAACGCCTGT GGTGAACACATTGGCTAATCGTGTGATGACTAACATCAACGATGCGGCGGCGGTGAGCTCTGTGACCTTAACTAGTATGG TGTTACTCGCTTCTGAGCAAAATGCGCTTGAGCGTTCTCAACTAGAGAAGCAGTTAGACTTGTATCTAACCATATTAAAA GAGCAGCCATATACCGAGTATACGTCTGTGCCAGAAGGTACGGGGCATGACTTGGTTTCTCAAGGTTTAGAGCTTAAAAA GTTGCAGATTGAAAGCGATCCCCTAGGCGATATCATTTCGATTGATCAAAGCATCGCGATCACCATGACTTACTATCGTA ATAACATCATCCACCTTATGGTGTTGCCATCTTTGATTGCGGCATGTTTGCTGCGTAAAGAAAATTGCAGCCGTGAAGAT GTTATCTGTGTTGTGAATGACTTCTATCCATTGCTTGAAGCCGAATTGTTTATGGGTATTGATGACCCTGCTCAATACGC AAGCCAGATCCTCGACATCTTTGTTGCTCAAGGTCTTGTGGTTGAAGCAGAGCACTTCGAAGTTGTGGAGAGCAAGATTA ATCAATTGCTACTGCTTTCTGGCACTATCAGTGAAACCATGCAGCGTTACGCTATCTTGTTTAACTTGCTTGAAGTTAAG CCAAATATGGAGCGTTCAGAGCTTGAAAAAGACAGTCATCGCTTGGCACAAAGATTAGGCGCACTTCACGGTATTACTGC ACCAGAGTTTTATGACAAGAAGCTATACGCTACGCTGAGTGTCAAATTAAAAGAGCTAGGTTACCTAGCTGATAATCAAG GGTGCAGCGATATCAAACGTATTAAAGAGAGAGCGAATCTACTGTTACGCTCGTCCGTAAGGCAAACGATTGTAGATAGT GTGCATGCGGAGCAGAATACTTAA
Upstream 100 bases:
>100_bases ACAAACCGGATTCGGTACGGTAAGAAGAGAATTGCGCAAACTATTTCAATATCTGCTATTCTAGCGCCTTATTAGAAGCG ACTAACATTGCAAATAAATC
Downstream 100 bases:
>100_bases TGGCAAATCATATGAATGCAGCCAAGAACAAGGTTGCAGGTAAGTCGCTGTTAGGTGGGGCCATGATTATTGCGGGCACA GCTGTCGGCGCAGGCATGTT
Product: glycerol-3-phosphate acyltransferase
Products: NA
Alternate protein names: GPAT [H]
Number of amino acids: Translated: 807; Mature: 806
Protein sequence:
>807_residues MSKQDSLWFKSLRWLQRQLVHTVVVPHDPFDDLNLDPSKPLAYVMKTESVSDIAALSEMTAKLGLPSPYEELEVNGVKAP RVVCLEGSKPLFGQREGGEQYIDCFKRLLSVHKQNRELDIQLVPVSLYWGRTPGKEDDTMRAAVLERQNPTWLRKCLMIL FLGRHNFVQFSNAVSLRYMADEHGTDKRIAQKLARVARVHFQRQRKVMTGPQLPKRQALFHALLKSDSITKAIKEEAASK KITEAEARAKAMEYLDEVAADYSDSLVRIAERFLTWLWNKLYKGINIKGAEQVRQLHHDGHEIVYVPCHRSHMDYLLLSY ILYYQGMVPPHIAAGINLNFWPAGPAFRRGGAFFIRRSFGGNKLYTAVFREYLDQLFTKGYSVEYFTEGGRSRTGRLLAP KTGMLAMTLNSVLRGVERPVTLVPVYLGYDHVMEVATYHKELSGKKKKKESVWQVFGAIRKLGNFGQGYVNFGEPITLHN FLNEQAPSWREDIAKDPDQKPSWLTPVVNTLANRVMTNINDAAAVSSVTLTSMVLLASEQNALERSQLEKQLDLYLTILK EQPYTEYTSVPEGTGHDLVSQGLELKKLQIESDPLGDIISIDQSIAITMTYYRNNIIHLMVLPSLIAACLLRKENCSRED VICVVNDFYPLLEAELFMGIDDPAQYASQILDIFVAQGLVVEAEHFEVVESKINQLLLLSGTISETMQRYAILFNLLEVK PNMERSELEKDSHRLAQRLGALHGITAPEFYDKKLYATLSVKLKELGYLADNQGCSDIKRIKERANLLLRSSVRQTIVDS VHAEQNT
Sequences:
>Translated_807_residues MSKQDSLWFKSLRWLQRQLVHTVVVPHDPFDDLNLDPSKPLAYVMKTESVSDIAALSEMTAKLGLPSPYEELEVNGVKAP RVVCLEGSKPLFGQREGGEQYIDCFKRLLSVHKQNRELDIQLVPVSLYWGRTPGKEDDTMRAAVLERQNPTWLRKCLMIL FLGRHNFVQFSNAVSLRYMADEHGTDKRIAQKLARVARVHFQRQRKVMTGPQLPKRQALFHALLKSDSITKAIKEEAASK KITEAEARAKAMEYLDEVAADYSDSLVRIAERFLTWLWNKLYKGINIKGAEQVRQLHHDGHEIVYVPCHRSHMDYLLLSY ILYYQGMVPPHIAAGINLNFWPAGPAFRRGGAFFIRRSFGGNKLYTAVFREYLDQLFTKGYSVEYFTEGGRSRTGRLLAP KTGMLAMTLNSVLRGVERPVTLVPVYLGYDHVMEVATYHKELSGKKKKKESVWQVFGAIRKLGNFGQGYVNFGEPITLHN FLNEQAPSWREDIAKDPDQKPSWLTPVVNTLANRVMTNINDAAAVSSVTLTSMVLLASEQNALERSQLEKQLDLYLTILK EQPYTEYTSVPEGTGHDLVSQGLELKKLQIESDPLGDIISIDQSIAITMTYYRNNIIHLMVLPSLIAACLLRKENCSRED VICVVNDFYPLLEAELFMGIDDPAQYASQILDIFVAQGLVVEAEHFEVVESKINQLLLLSGTISETMQRYAILFNLLEVK PNMERSELEKDSHRLAQRLGALHGITAPEFYDKKLYATLSVKLKELGYLADNQGCSDIKRIKERANLLLRSSVRQTIVDS VHAEQNT >Mature_806_residues SKQDSLWFKSLRWLQRQLVHTVVVPHDPFDDLNLDPSKPLAYVMKTESVSDIAALSEMTAKLGLPSPYEELEVNGVKAPR VVCLEGSKPLFGQREGGEQYIDCFKRLLSVHKQNRELDIQLVPVSLYWGRTPGKEDDTMRAAVLERQNPTWLRKCLMILF LGRHNFVQFSNAVSLRYMADEHGTDKRIAQKLARVARVHFQRQRKVMTGPQLPKRQALFHALLKSDSITKAIKEEAASKK ITEAEARAKAMEYLDEVAADYSDSLVRIAERFLTWLWNKLYKGINIKGAEQVRQLHHDGHEIVYVPCHRSHMDYLLLSYI LYYQGMVPPHIAAGINLNFWPAGPAFRRGGAFFIRRSFGGNKLYTAVFREYLDQLFTKGYSVEYFTEGGRSRTGRLLAPK TGMLAMTLNSVLRGVERPVTLVPVYLGYDHVMEVATYHKELSGKKKKKESVWQVFGAIRKLGNFGQGYVNFGEPITLHNF LNEQAPSWREDIAKDPDQKPSWLTPVVNTLANRVMTNINDAAAVSSVTLTSMVLLASEQNALERSQLEKQLDLYLTILKE QPYTEYTSVPEGTGHDLVSQGLELKKLQIESDPLGDIISIDQSIAITMTYYRNNIIHLMVLPSLIAACLLRKENCSREDV ICVVNDFYPLLEAELFMGIDDPAQYASQILDIFVAQGLVVEAEHFEVVESKINQLLLLSGTISETMQRYAILFNLLEVKP NMERSELEKDSHRLAQRLGALHGITAPEFYDKKLYATLSVKLKELGYLADNQGCSDIKRIKERANLLLRSSVRQTIVDSV HAEQNT
Specific function: De novo phospholipid biosynthesis; first step. [C]
COG id: COG2937
COG function: function code I; Glycerol-3-phosphate O-acyltransferase
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GPAT/DAPAT family [H]
Homologues:
Organism=Homo sapiens, GI7657134, Length=445, Percent_Identity=30.1123595505618, Blast_Score=161, Evalue=2e-39, Organism=Homo sapiens, GI190358539, Length=421, Percent_Identity=26.3657957244656, Blast_Score=141, Evalue=3e-33, Organism=Escherichia coli, GI87082362, Length=814, Percent_Identity=47.9115479115479, Blast_Score=771, Evalue=0.0, Organism=Caenorhabditis elegans, GI25147672, Length=352, Percent_Identity=32.1022727272727, Blast_Score=153, Evalue=3e-37, Organism=Caenorhabditis elegans, GI71988723, Length=448, Percent_Identity=27.0089285714286, Blast_Score=151, Evalue=1e-36, Organism=Caenorhabditis elegans, GI71988728, Length=389, Percent_Identity=28.7917737789203, Blast_Score=143, Evalue=3e-34, Organism=Drosophila melanogaster, GI17864692, Length=375, Percent_Identity=29.3333333333333, Blast_Score=155, Evalue=1e-37, Organism=Drosophila melanogaster, GI24650754, Length=419, Percent_Identity=28.1622911694511, Blast_Score=130, Evalue=5e-30, Organism=Drosophila melanogaster, GI21357731, Length=341, Percent_Identity=29.6187683284457, Blast_Score=130, Evalue=5e-30, Organism=Drosophila melanogaster, GI24650752, Length=419, Percent_Identity=28.1622911694511, Blast_Score=130, Evalue=5e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002123 - InterPro: IPR022284 [H]
Pfam domain/function: PF01553 Acyltransferase [H]
EC number: =2.3.1.15 [H]
Molecular weight: Translated: 91657; Mature: 91526
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKQDSLWFKSLRWLQRQLVHTVVVPHDPFDDLNLDPSKPLAYVMKTESVSDIAALSEMT CCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH AKLGLPSPYEELEVNGVKAPRVVCLEGSKPLFGQREGGEQYIDCFKRLLSVHKQNRELDI HHCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE QLVPVSLYWGRTPGKEDDTMRAAVLERQNPTWLRKCLMILFLGRHNFVQFSNAVSLRYMA EEEEEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCEEEEEEC DEHGTDKRIAQKLARVARVHFQRQRKVMTGPQLPKRQALFHALLKSDSITKAIKEEAASK CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH KITEAEARAKAMEYLDEVAADYSDSLVRIAERFLTWLWNKLYKGINIKGAEQVRQLHHDG HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC HEIVYVPCHRSHMDYLLLSYILYYQGMVPPHIAAGINLNFWPAGPAFRRGGAFFIRRSFG CEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEECCCCHHHHCCCEEEEEECCC GNKLYTAVFREYLDQLFTKGYSVEYFTEGGRSRTGRLLAPKTGMLAMTLNSVLRGVERPV CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCE TLVPVYLGYDHVMEVATYHKELSGKKKKKESVWQVFGAIRKLGNFGQGYVNFGEPITLHN EEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH FLNEQAPSWREDIAKDPDQKPSWLTPVVNTLANRVMTNINDAAAVSSVTLTSMVLLASEQ HHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH NALERSQLEKQLDLYLTILKEQPYTEYTSVPEGTGHDLVSQGLELKKLQIESDPLGDIIS HHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCHHHHHCCCCEEEEEECCCCCCCHHC IDQSIAITMTYYRNNIIHLMVLPSLIAACLLRKENCSREDVICVVNDFYPLLEAELFMGI CCCCEEEEEEEHHCCEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCC DDPAQYASQILDIFVAQGLVVEAEHFEVVESKINQLLLLSGTISETMQRYAILFNLLEVK CCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHCC PNMERSELEKDSHRLAQRLGALHGITAPEFYDKKLYATLSVKLKELGYLADNQGCSDIKR CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHH IKERANLLLRSSVRQTIVDSVHAEQNT HHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SKQDSLWFKSLRWLQRQLVHTVVVPHDPFDDLNLDPSKPLAYVMKTESVSDIAALSEMT CCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH AKLGLPSPYEELEVNGVKAPRVVCLEGSKPLFGQREGGEQYIDCFKRLLSVHKQNRELDI HHCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE QLVPVSLYWGRTPGKEDDTMRAAVLERQNPTWLRKCLMILFLGRHNFVQFSNAVSLRYMA EEEEEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCEEEEEEC DEHGTDKRIAQKLARVARVHFQRQRKVMTGPQLPKRQALFHALLKSDSITKAIKEEAASK CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH KITEAEARAKAMEYLDEVAADYSDSLVRIAERFLTWLWNKLYKGINIKGAEQVRQLHHDG HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC HEIVYVPCHRSHMDYLLLSYILYYQGMVPPHIAAGINLNFWPAGPAFRRGGAFFIRRSFG CEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEECCCCHHHHCCCEEEEEECCC GNKLYTAVFREYLDQLFTKGYSVEYFTEGGRSRTGRLLAPKTGMLAMTLNSVLRGVERPV CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCE TLVPVYLGYDHVMEVATYHKELSGKKKKKESVWQVFGAIRKLGNFGQGYVNFGEPITLHN EEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH FLNEQAPSWREDIAKDPDQKPSWLTPVVNTLANRVMTNINDAAAVSSVTLTSMVLLASEQ HHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH NALERSQLEKQLDLYLTILKEQPYTEYTSVPEGTGHDLVSQGLELKKLQIESDPLGDIIS HHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCHHHHHCCCCEEEEEECCCCCCCHHC IDQSIAITMTYYRNNIIHLMVLPSLIAACLLRKENCSREDVICVVNDFYPLLEAELFMGI CCCCEEEEEEEHHCCEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCC DDPAQYASQILDIFVAQGLVVEAEHFEVVESKINQLLLLSGTISETMQRYAILFNLLEVK CCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHCC PNMERSELEKDSHRLAQRLGALHGITAPEFYDKKLYATLSVKLKELGYLADNQGCSDIKR CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHH IKERANLLLRSSVRQTIVDSVHAEQNT HHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA