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The map label for this gene is rbn [C]

Identifier: 157963720

GI number: 157963720

Start: 4754959

End: 4755981

Strand: Reverse

Name: rbn [C]

Synonym: Spea_3909

Alternate gene names: 157963720

Gene position: 4755981-4754959 (Counterclockwise)

Preceding gene: 157963724

Following gene: 157963719

Centisome position: 91.91

GC content: 46.33

Gene sequence:

>1023_bases
GTGAAAAATAAGATAGCGATAAATCAGGTTCGTTCTTTTTTACTGAGCATTTGGGCATTTTTCTTACATCTACTCAGTCG
CTTCAAAGAGGACCAAGTCAATATTAAGGCCGGGCACTTGGCTTATGTGACCTTATTATCTTTGGTGCCTATTGTGGCTG
TGATGTTTTCTATGTTGTCCGCTTTCCCCGTATTTTCAGGTATTCGTGAAAAGTTAGAGGGTTTTGTCTACGACAACTTT
CTGCCAGCCGCTGGCGATACGGTGCAGATCTACATCAATGAATTTGTCGCTAACGCATCTAAGGGCACGAGTGTGGGGAT
CGTGGCGTTAATGGTGGTGGCACTGATGCTGATCTCGGCTATCGATAAGGCGCTCAACAGTATTTGGCGCACCAAAGAGA
AGCGTCAGGCTGCGGTGTCTTTTTCCATGTATTGGATGGTGCTGACTTTAGGGCCTGTACTCGTGGGCGCCAGCTTGGTG
GCGACATCCTATATTGTGTCATTAAAGTTATTTAGTGAAACCGAGCTTTCAGGTGTGGTGCCAATACTGATAGAGCGTTT
ACCTATGCTATTTTCAGTGGCCGCCTTCTTGCTCCTGTATATGGTCGTTCCGATTAAAAAGGTTAAGTTTCTGCATGCCT
TGCTAGGTGCGTTAGTCGCAGCCATGCTGTTTGAGCTAGGCAAGAAAGGCTTTGCCTTTTACGTGACTCAATTCCCCAGT
TACGAGGCGATTTATGGTGCCTTAGCGACCATTCCTATCCTGTTTGTTTGGGTCTATGTTTCTTGGGTCATCGTACTCGT
CGGCGCAGAAATAACCGCAGGACTACCTGAGTACCTGCATGAGTGTAAGTTGATCCGTGAAACCGCGTTAGCGGAATCTC
AAGCAGAAACTAAAACCGAAGAGCCGGTGACTGAATCAAAGAATGATGGCCCAAATAGTAGCAATGATAGTGGTCAAGAC
AACGTCAGAGGCAGTGAGAAAACTGATGAGCCAGCCCAAGATAAACAGGACAAGCTGGATTAA

Upstream 100 bases:

>100_bases
AGCTTTATTGTACCAAGATAATGATTCGCAGATCATTTATCGTCTTATACTGATTGGTATTACCGATTAAGACCAACTTT
AACAGAATCAAGAGTAACAA

Downstream 100 bases:

>100_bases
TGTCTGCAGTGCAGTCGCCACTCCTTAGCCGAACCTGGCTAGATGTTGGAGATGACCACCAAATATATGTAGCCCAGTAC
GGTAATCCGAACGGGATACC

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MKNKIAINQVRSFLLSIWAFFLHLLSRFKEDQVNIKAGHLAYVTLLSLVPIVAVMFSMLSAFPVFSGIREKLEGFVYDNF
LPAAGDTVQIYINEFVANASKGTSVGIVALMVVALMLISAIDKALNSIWRTKEKRQAAVSFSMYWMVLTLGPVLVGASLV
ATSYIVSLKLFSETELSGVVPILIERLPMLFSVAAFLLLYMVVPIKKVKFLHALLGALVAAMLFELGKKGFAFYVTQFPS
YEAIYGALATIPILFVWVYVSWVIVLVGAEITAGLPEYLHECKLIRETALAESQAETKTEEPVTESKNDGPNSSNDSGQD
NVRGSEKTDEPAQDKQDKLD

Sequences:

>Translated_340_residues
MKNKIAINQVRSFLLSIWAFFLHLLSRFKEDQVNIKAGHLAYVTLLSLVPIVAVMFSMLSAFPVFSGIREKLEGFVYDNF
LPAAGDTVQIYINEFVANASKGTSVGIVALMVVALMLISAIDKALNSIWRTKEKRQAAVSFSMYWMVLTLGPVLVGASLV
ATSYIVSLKLFSETELSGVVPILIERLPMLFSVAAFLLLYMVVPIKKVKFLHALLGALVAAMLFELGKKGFAFYVTQFPS
YEAIYGALATIPILFVWVYVSWVIVLVGAEITAGLPEYLHECKLIRETALAESQAETKTEEPVTESKNDGPNSSNDSGQD
NVRGSEKTDEPAQDKQDKLD
>Mature_340_residues
MKNKIAINQVRSFLLSIWAFFLHLLSRFKEDQVNIKAGHLAYVTLLSLVPIVAVMFSMLSAFPVFSGIREKLEGFVYDNF
LPAAGDTVQIYINEFVANASKGTSVGIVALMVVALMLISAIDKALNSIWRTKEKRQAAVSFSMYWMVLTLGPVLVGASLV
ATSYIVSLKLFSETELSGVVPILIERLPMLFSVAAFLLLYMVVPIKKVKFLHALLGALVAAMLFELGKKGFAFYVTQFPS
YEAIYGALATIPILFVWVYVSWVIVLVGAEITAGLPEYLHECKLIRETALAESQAETKTEEPVTESKNDGPNSSNDSGQD
NVRGSEKTDEPAQDKQDKLD

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=295, Percent_Identity=50.1694915254237, Blast_Score=282, Evalue=2e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3909_SHEPA (A8H9I2)

Other databases:

- EMBL:   CP000851
- RefSeq:   YP_001503754.1
- STRING:   A8H9I2
- GeneID:   5664293
- GenomeReviews:   CP000851_GR
- KEGG:   spl:Spea_3909
- NMPDR:   fig|398579.3.peg.3381
- eggNOG:   COG1295
- HOGENOM:   HBG451793
- OMA:   ELAQIQV
- ProtClustDB:   PRK01637
- BioCyc:   SPEA398579:SPEA_3909-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- PIRSF:   PIRSF035875
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 37476; Mature: 37476

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1bdceae4)-; HASH(0x1e7395c8)-; HASH(0x1ec7c5ac)-; HASH(0x1db7ffe8)-; HASH(0x1e5b9530)-; HASH(0x1e3d529c)-; HASH(0x1c7c7e74)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCH
>Mature Secondary Structure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CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA