| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is recG [H]
Identifier: 157963695
GI number: 157963695
Start: 4730762
End: 4732852
Strand: Direct
Name: recG [H]
Synonym: Spea_3884
Alternate gene names: 157963695
Gene position: 4730762-4732852 (Clockwise)
Preceding gene: 157963694
Following gene: 157963696
Centisome position: 91.42
GC content: 50.45
Gene sequence:
>2091_bases TTGAGTGCTAACAGTTTGCAAAGACTCGATCTTGTTCCTATCACAGATCTCAAAGGCGTCGCGAAGAAGATGGCCGAGAG ACTAGCTAAGTTGAGCATAACAACAGTGCAAGATCTGTTGTTTCATCTGCCGCTGCGCTACGAGGATCGCACTCAAGTCT ATCCTATTGCCTCGCTTTATCCCGGCAGTTACGGCACCATCGAAGCCATTATTCAGTCGAGCCAAATTATTCAAGGCCGC AAGCGCATGCTCACCTGCACCGTGCGCGATGATACTGGCAGCTTAACCCTAAGGTTTTTTAACTTCTCTGTTGCCCAGCG TAACGGCTTAGAGATAGGCATGACTATTAGAGCCTACGGTGAAATACGCCGCAGTAATCACGGCGTTGAAATTATTCATC CAGAATACAAGCTCATCTCACCGGGTGAAGACCTACAGCTAAGCGATACGCTGACCCCTGTCTACCCAACCACCGAGGGC TTAAAGCAAGCCAGTTGGATTAAGCTCACCGAGCAAGCACTCGCTATGCTAGACAATGGTGGCTTACAGGAACTGCTGCC CACTAACCTGCAGCCAAATAATTTAGATTTAAAACAAGCGCTACAGATCTTACATAGGCCCAATAATCAGGTTTCACTTT TCGAGCTGGAGCAAGGTACGCATCCGGCGCAGCAACGTCTTATCCAAGAAGAGTTACTGGCTCACAATCTGAGCATGTTA CGACTGCGCCAGCGCAGCAACCGTGATAGCGCGGTCAGTATGAATGCCACGGGTCAGCTACTGAATCCATTTTTAGCCTC TTTGCCCTTTAAGCCTACGGGCGCACAGCAGCGAGTTGTCGCCGACATCACCCAAGACTTGGCCAAGCACGAGCCAATGA TGCGATTGGTACAAGGCGATGTGGGCTCAGGTAAAACCTTGGTCGCCGCCTTAGCTGCACTGCAGGCAATAGAGAGCGGC TATCAAGTAGCAATGATGGCACCAACAGAATTACTAGCCGAGCAACACGCAATCAATTTCAAGAGCTGGTTTGAGCCTTT AGGGCTAAAAGTCGGCTGGCTTGCAGGAAAACTCAAAGGCAAGGCCAGAGCCCAGTCATTAGCCGATATAGAATCTGGCG ATGCCCATATTGTGATTGGCACCCATGCTATTTTCCAAGAGCAGGTACAGTTTAATAAATTAGCGCTGATTATCATCGAT GAGCAACATAGATTTGGCGTACACCAACGCTTAGGTCTGCGTGAAAAAGGCATTAGTCAGGGCTTTCATCCACACCAGTT GATTATGACGGCAACCCCGATCCCGCGTACTTTGGCGATGACCGCCTATGCCGATCTCGACACCTCTATTATCGATGAGT TGCCGCCAGGAAGAACCCCGGTAACCACAGTGGCTATTTCCGAACAACGCCGCGAAGAGGTCCTCGAGCGTGTCCGTCAG GCAGCAATTAACGACAAACGCCAAGCCTATTGGGTTTGCACCTTAATTGAAGAGTCTGAAGCCCTCGAATGTCAGGCTGC TGAAGATACGGCAGAAGAACTTAAACGTGCTCTGCCCGAGTTAAAAGTTGGCCTAGTGCATGGCCGTATGAAGCCCGCTG AGAAGCAGCAGATCATGGCAGATTTCAAAGCCGGAGAACTCAACCTGCTGGTTGCTACGACCGTGATTGAGGTTGGAGTC GATGTGCCCAATGCCAGCTTGATGATCATTGAAAACCCTGAACGTTTGGGCCTAGCCCAGCTGCACCAACTTAGAGGTCG TGTGGGTCGTGGCGCGGTAGCCAGTCACTGCGTGCTGTTATACAAGGCACCATTATCGGCAACGGCAACCAAGCGGATTG GGGTACTGAGACAAAGTAATGATGGCTTTGTTATTGCCCAGCAAGATCTGGAGATCCGTGGCCCTGGCGAAGTACTAGGC ACCAAGCAAACCGGTATTGCCGACATGAAAATTGCCGACTTGATGCGCGATCAGGCGCTCATTCCCCATATACAGAAACT GGCAGCTCACGTTATGCAGCAAGCACCAAATAGTGTCGATGCCATTATTGAGCGCTGGTTAGGCGATAGAGAGCAGTTTG TACAAGCGTAA
Upstream 100 bases:
>100_bases CACCCAGCCCACATTAATTAGCTGCTTGACTCCCAAACCAATAAACGCCAAATTTGCGTAAACCGATAACTCTGATAATA TATGTATAAATTTACAGTGT
Downstream 100 bases:
>100_bases AGTGCTAATTTGAGCCGTTTTCCAAATTAAATATCCTTCATAGAGGCTTAGCCTATAGACAATCCGTTGGAATATTGCAA AATGGATTAAAGCTATACTT
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 696; Mature: 695
Protein sequence:
>696_residues MSANSLQRLDLVPITDLKGVAKKMAERLAKLSITTVQDLLFHLPLRYEDRTQVYPIASLYPGSYGTIEAIIQSSQIIQGR KRMLTCTVRDDTGSLTLRFFNFSVAQRNGLEIGMTIRAYGEIRRSNHGVEIIHPEYKLISPGEDLQLSDTLTPVYPTTEG LKQASWIKLTEQALAMLDNGGLQELLPTNLQPNNLDLKQALQILHRPNNQVSLFELEQGTHPAQQRLIQEELLAHNLSML RLRQRSNRDSAVSMNATGQLLNPFLASLPFKPTGAQQRVVADITQDLAKHEPMMRLVQGDVGSGKTLVAALAALQAIESG YQVAMMAPTELLAEQHAINFKSWFEPLGLKVGWLAGKLKGKARAQSLADIESGDAHIVIGTHAIFQEQVQFNKLALIIID EQHRFGVHQRLGLREKGISQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISEQRREEVLERVRQ AAINDKRQAYWVCTLIEESEALECQAAEDTAEELKRALPELKVGLVHGRMKPAEKQQIMADFKAGELNLLVATTVIEVGV DVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKAPLSATATKRIGVLRQSNDGFVIAQQDLEIRGPGEVLG TKQTGIADMKIADLMRDQALIPHIQKLAAHVMQQAPNSVDAIIERWLGDREQFVQA
Sequences:
>Translated_696_residues MSANSLQRLDLVPITDLKGVAKKMAERLAKLSITTVQDLLFHLPLRYEDRTQVYPIASLYPGSYGTIEAIIQSSQIIQGR KRMLTCTVRDDTGSLTLRFFNFSVAQRNGLEIGMTIRAYGEIRRSNHGVEIIHPEYKLISPGEDLQLSDTLTPVYPTTEG LKQASWIKLTEQALAMLDNGGLQELLPTNLQPNNLDLKQALQILHRPNNQVSLFELEQGTHPAQQRLIQEELLAHNLSML RLRQRSNRDSAVSMNATGQLLNPFLASLPFKPTGAQQRVVADITQDLAKHEPMMRLVQGDVGSGKTLVAALAALQAIESG YQVAMMAPTELLAEQHAINFKSWFEPLGLKVGWLAGKLKGKARAQSLADIESGDAHIVIGTHAIFQEQVQFNKLALIIID EQHRFGVHQRLGLREKGISQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISEQRREEVLERVRQ AAINDKRQAYWVCTLIEESEALECQAAEDTAEELKRALPELKVGLVHGRMKPAEKQQIMADFKAGELNLLVATTVIEVGV DVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKAPLSATATKRIGVLRQSNDGFVIAQQDLEIRGPGEVLG TKQTGIADMKIADLMRDQALIPHIQKLAAHVMQQAPNSVDAIIERWLGDREQFVQA >Mature_695_residues SANSLQRLDLVPITDLKGVAKKMAERLAKLSITTVQDLLFHLPLRYEDRTQVYPIASLYPGSYGTIEAIIQSSQIIQGRK RMLTCTVRDDTGSLTLRFFNFSVAQRNGLEIGMTIRAYGEIRRSNHGVEIIHPEYKLISPGEDLQLSDTLTPVYPTTEGL KQASWIKLTEQALAMLDNGGLQELLPTNLQPNNLDLKQALQILHRPNNQVSLFELEQGTHPAQQRLIQEELLAHNLSMLR LRQRSNRDSAVSMNATGQLLNPFLASLPFKPTGAQQRVVADITQDLAKHEPMMRLVQGDVGSGKTLVAALAALQAIESGY QVAMMAPTELLAEQHAINFKSWFEPLGLKVGWLAGKLKGKARAQSLADIESGDAHIVIGTHAIFQEQVQFNKLALIIIDE QHRFGVHQRLGLREKGISQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISEQRREEVLERVRQA AINDKRQAYWVCTLIEESEALECQAAEDTAEELKRALPELKVGLVHGRMKPAEKQQIMADFKAGELNLLVATTVIEVGVD VPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKAPLSATATKRIGVLRQSNDGFVIAQQDLEIRGPGEVLGT KQTGIADMKIADLMRDQALIPHIQKLAAHVMQQAPNSVDAIIERWLGDREQFVQA
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=688, Percent_Identity=66.7151162790698, Blast_Score=911, Evalue=0.0, Organism=Escherichia coli, GI1787357, Length=387, Percent_Identity=38.5012919896641, Blast_Score=242, Evalue=5e-65, Organism=Saccharomyces cerevisiae, GI6320224, Length=373, Percent_Identity=24.1286863270777, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 77016; Mature: 76885
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSANSLQRLDLVPITDLKGVAKKMAERLAKLSITTVQDLLFHLPLRYEDRTQVYPIASLY CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHCC PGSYGTIEAIIQSSQIIQGRKRMLTCTVRDDTGSLTLRFFNFSVAQRNGLEIGMTIRAYG CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCEEEEEEEEHH EIRRSNHGVEIIHPEYKLISPGEDLQLSDTLTPVYPTTEGLKQASWIKLTEQALAMLDNG HHHHCCCCEEEECCCEEEECCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC GLQELLPTNLQPNNLDLKQALQILHRPNNQVSLFELEQGTHPAQQRLIQEELLAHNLSML CHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH RLRQRSNRDSAVSMNATGQLLNPFLASLPFKPTGAQQRVVADITQDLAKHEPMMRLVQGD HHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCC VGSGKTLVAALAALQAIESGYQVAMMAPTELLAEQHAINFKSWFEPLGLKVGWLAGKLKG CCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCHHHHHHHHCCEEEEHHHHHCC KARAQSLADIESGDAHIVIGTHAIFQEQVQFNKLALIIIDEQHRFGVHQRLGLREKGISQ HHHHHHHHHCCCCCEEEEEECHHHHHHHHCCCEEEEEEEECCHHCCHHHHCCCHHHHHCC GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISEQRREEVLERVRQ CCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHH AAINDKRQAYWVCTLIEESEALECQAAEDTAEELKRALPELKVGLVHGRMKPAEKQQIMA HHCCCCCCEEEEEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH DFKAGELNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL HCCCCCEEEEEEEEHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHEEEE YKAPLSATATKRIGVLRQSNDGFVIAQQDLEIRGPGEVLGTKQTGIADMKIADLMRDQAL EECCCCHHHHHHHHEEEECCCCEEEEECCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHH IPHIQKLAAHVMQQAPNSVDAIIERWLGDREQFVQA HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCC >Mature Secondary Structure SANSLQRLDLVPITDLKGVAKKMAERLAKLSITTVQDLLFHLPLRYEDRTQVYPIASLY CCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHCC PGSYGTIEAIIQSSQIIQGRKRMLTCTVRDDTGSLTLRFFNFSVAQRNGLEIGMTIRAYG CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCEEEEEEEEHH EIRRSNHGVEIIHPEYKLISPGEDLQLSDTLTPVYPTTEGLKQASWIKLTEQALAMLDNG HHHHCCCCEEEECCCEEEECCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC GLQELLPTNLQPNNLDLKQALQILHRPNNQVSLFELEQGTHPAQQRLIQEELLAHNLSML CHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH RLRQRSNRDSAVSMNATGQLLNPFLASLPFKPTGAQQRVVADITQDLAKHEPMMRLVQGD HHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCC VGSGKTLVAALAALQAIESGYQVAMMAPTELLAEQHAINFKSWFEPLGLKVGWLAGKLKG CCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCHHHHHHHHCCEEEEHHHHHCC KARAQSLADIESGDAHIVIGTHAIFQEQVQFNKLALIIIDEQHRFGVHQRLGLREKGISQ HHHHHHHHHCCCCCEEEEEECHHHHHHHHCCCEEEEEEEECCHHCCHHHHCCCHHHHHCC GFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAISEQRREEVLERVRQ CCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHH AAINDKRQAYWVCTLIEESEALECQAAEDTAEELKRALPELKVGLVHGRMKPAEKQQIMA HHCCCCCCEEEEEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH DFKAGELNLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL HCCCCCEEEEEEEEHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHEEEE YKAPLSATATKRIGVLRQSNDGFVIAQQDLEIRGPGEVLGTKQTGIADMKIADLMRDQAL EECCCCHHHHHHHHEEEECCCCEEEEECCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHH IPHIQKLAAHVMQQAPNSVDAIIERWLGDREQFVQA HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]