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The map label for this gene is hipB [C]

Identifier: 157963658

GI number: 157963658

Start: 4674824

End: 4675105

Strand: Reverse

Name: hipB [C]

Synonym: Spea_3847

Alternate gene names: 157963658

Gene position: 4675105-4674824 (Counterclockwise)

Preceding gene: 157963660

Following gene: 157963657

Centisome position: 90.35

GC content: 45.04

Gene sequence:

>282_bases
ATGAAGGTGACGAACTCAAAGCAGCTTAGCGCATATCTCAAAGATGCACGATTGAATATGAAGCTCTCGCAAAGCAAGGT
AGGTAGTAAAGTCGGCATTCGTCAGGATACAGTTTCAAGCTTTGAACAGAACCCTGACTCCACCAAGCTAGAGACGCTGT
TTAAAATTCTATCAGCACTGAACCTTGAGCTGGATATAAAGGTTAGGAATTCAGAACTAGCGGAACGGCTGAATGATGAT
AAAAGCACCGCCTCCGAGCAAGAGTGGAAGGAGGAGTGGTAA

Upstream 100 bases:

>100_bases
AGCGTGTAATGCGTGATTTAACGGTTAAAGCGTGTGAAACTTGATTTACCTGCTTTAGCGTGTAAAGTAGGTCTAGTAAT
AGGTCTACAGGAAAGTGAGC

Downstream 100 bases:

>100_bases
TGGCAGTTCTGGATGTTTATATGAATGGCTATTTGGTCGGTGAGTTTACTAAATCGACCACAGGCTCTCATCTGTTTAAG
TATGCAGCCCAATGGCTAGA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; HipB Protein; Helix-Turn-Helix Domain-Containing Protein; Protein HipB; HipB-Like Transcriptional Regulator; Transcriptional Regulator Hipb Ortholog; HipB Transcriptional Regulator

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MKVTNSKQLSAYLKDARLNMKLSQSKVGSKVGIRQDTVSSFEQNPDSTKLETLFKILSALNLELDIKVRNSELAERLNDD
KSTASEQEWKEEW

Sequences:

>Translated_93_residues
MKVTNSKQLSAYLKDARLNMKLSQSKVGSKVGIRQDTVSSFEQNPDSTKLETLFKILSALNLELDIKVRNSELAERLNDD
KSTASEQEWKEEW
>Mature_93_residues
MKVTNSKQLSAYLKDARLNMKLSQSKVGSKVGIRQDTVSSFEQNPDSTKLETLFKILSALNLELDIKVRNSELAERLNDD
KSTASEQEWKEEW

Specific function: Binds To Operator Sites With The Consensus Sequence 5-'Tatccn(8)GGATA-3' And Repress The Hip Operon Promoter. [C]

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10633; Mature: 10633

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTNSKQLSAYLKDARLNMKLSQSKVGSKVGIRQDTVSSFEQNPDSTKLETLFKILSAL
CCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
NLELDIKVRNSELAERLNDDKSTASEQEWKEEW
CCCEEEEECCHHHHHHHCCCCCCCCHHHHHHCC
>Mature Secondary Structure
MKVTNSKQLSAYLKDARLNMKLSQSKVGSKVGIRQDTVSSFEQNPDSTKLETLFKILSAL
CCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
NLELDIKVRNSELAERLNDDKSTASEQEWKEEW
CCCEEEEECCHHHHHHHCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA