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The map label for this gene is slmA [H]

Identifier: 157963651

GI number: 157963651

Start: 4666647

End: 4667240

Strand: Direct

Name: slmA [H]

Synonym: Spea_3840

Alternate gene names: 157963651

Gene position: 4666647-4667240 (Clockwise)

Preceding gene: 157963650

Following gene: 157963652

Centisome position: 90.18

GC content: 46.8

Gene sequence:

>594_bases
ATGGCTGCAAGCCCGAAAATAAACCGTCGTGAGCATATCCTCCAATGTTTAGCGACTATGTTAGAAACAAGCCCTGGACA
AAGGATCACTACAGCTAAATTAGCGGCTGAAGTCGGCGTTTCAGAAGCGGCGCTTTACCGCCACTTTCCAAGTAAGGCGC
GCATGTTTGAAGGCCTCATCGAATTTATCGAAGAGTCATTGCTCTCTCGCATCAACCTGATCATGGACGAAGAGAAAGAC
ACCATGAAGCGTTGTCAGCAATTGCTGCAGCTACTACTGGTATTTGCCGAGCGAAACCCGGGGATCTCACGAGTATTAAA
TGGTGATGCACTGCTAGGCGAAAATGAACGTCTACGTAGCCGTATCAGTCAGCTATTCTCAAAAATTGAAACCCACTTAA
AGCAAATCCTGCGTGAAAAAAGCTTACGTGAAGGCAAAGGCTTTGAGCTCGATGAAGCAGTGTTAGCTAACTTACTGCTT
GCCGTTGCCGAAGGCCGAATCGCTCAGTTTGTTCGTAGTGAGTTTAAACTCAAGCCGACCAAGCACTTCAATGAGCAGTG
GAACTTCATCCAACAGCAACTGCTTCAAAGCTAA

Upstream 100 bases:

>100_bases
ACTGATTGTTTAGCTTTTTACGCAATCACTTTTAATGGATAGCATGGAGCAATGTTTCCTTGCCGTCTCGCTCAGTAGTA
ATCGAGTGAAGGACAGATAA

Downstream 100 bases:

>100_bases
TTATTCTATAAAAATGGCAGCAGACCATACATGCTGCCATTTCCTCCTGCGACTATTGTTTCCCCTCTCATTTTCGTTTA
CTTTTCCAACAACAAACACC

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MAASPKINRREHILQCLATMLETSPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIEFIEESLLSRINLIMDEEKD
TMKRCQQLLQLLLVFAERNPGISRVLNGDALLGENERLRSRISQLFSKIETHLKQILREKSLREGKGFELDEAVLANLLL
AVAEGRIAQFVRSEFKLKPTKHFNEQWNFIQQQLLQS

Sequences:

>Translated_197_residues
MAASPKINRREHILQCLATMLETSPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIEFIEESLLSRINLIMDEEKD
TMKRCQQLLQLLLVFAERNPGISRVLNGDALLGENERLRSRISQLFSKIETHLKQILREKSLREGKGFELDEAVLANLLL
AVAEGRIAQFVRSEFKLKPTKHFNEQWNFIQQQLLQS
>Mature_196_residues
AASPKINRREHILQCLATMLETSPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIEFIEESLLSRINLIMDEEKDT
MKRCQQLLQLLLVFAERNPGISRVLNGDALLGENERLRSRISQLFSKIETHLKQILREKSLREGKGFELDEAVLANLLLA
VAEGRIAQFVRSEFKLKPTKHFNEQWNFIQQQLLQS

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=192, Percent_Identity=60.9375, Blast_Score=228, Evalue=1e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22574; Mature: 22442

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASPKINRREHILQCLATMLETSPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLI
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHH
EFIEESLLSRINLIMDEEKDTMKRCQQLLQLLLVFAERNPGISRVLNGDALLGENERLRS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCCHHHHH
RISQLFSKIETHLKQILREKSLREGKGFELDEAVLANLLLAVAEGRIAQFVRSEFKLKPT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KHFNEQWNFIQQQLLQS
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AASPKINRREHILQCLATMLETSPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLI
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHH
EFIEESLLSRINLIMDEEKDTMKRCQQLLQLLLVFAERNPGISRVLNGDALLGENERLRS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCCHHHHH
RISQLFSKIETHLKQILREKSLREGKGFELDEAVLANLLLAVAEGRIAQFVRSEFKLKPT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KHFNEQWNFIQQQLLQS
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA