Click here to switch to the map view.

The map label for this gene is dsdX [H]

Identifier: 157963264

GI number: 157963264

Start: 4217550

End: 4218887

Strand: Reverse

Name: dsdX [H]

Synonym: Spea_3450

Alternate gene names: 157963264

Gene position: 4218887-4217550 (Counterclockwise)

Preceding gene: 157963267

Following gene: 157963263

Centisome position: 81.53

GC content: 49.18

Gene sequence:

>1338_bases
ATGGAATCACAACTGTGGATTATCGGTACTCTGCTTAGCAGTATCTTGCTGATTGTTATCAGCATCGTTAAGTTCAAGTT
GCACCCGTTCTTGGCACTCTTGTTAGCCAGCTTCTTTGTGGGCGGCATGATGGGTATGGCGCCACTTGAAATGATCAAGG
CGATGGAGTCAGGCATTGGTGGCACCTTAGGCTTCTTGGCTATCGTAATCGGTCTGGGCACCATCTTGGGTAAGATGATG
GAGATCTCAGGCGCCGCTGAGCGAATTGGTATCACCCTGCTAAAATCTCGTTACCTAAGCCCTGATGTGATCATGGTGCT
GGTGGGCCTTATTTGCGGTATCACCTTGTTCGTAGAAGTGGGCGTGGTATTGCTTATTCCACTCGCTTTCTCTATCGCTC
GTAAAACCAATACATCCTTGCTAAAACTTGCCATTCCGCTATGTACCGCCTTGATGGCTGTGCACTGTATTGTGCCGCCA
CACCCTGCAGCGTTGTTTGTGACTAATGCACTAGGCGCCGATGTGGGTTCGGTAATTATCTGGGGTCTGCTAATCGGTCT
ATTGGCCTCGTTAATAGGTGGTCCACTATTCCTTAAGCTGTTTGGCGACAAGCTGCCACACTTAAGCGTACCTGCCGAGT
TTAGTGAAGTTTCAACCCGTAAAGAGAGTGAGTTGCCATCACTTGGCACAACACTGTTCACCATCCTTTTGCCAATCATT
TTAATGTTGGTTAAAACCGTGGCCGAGCTGTACATGGAGCCGGGCACTGCGCTTTATACCACCCTTGAATTTATTGGTAA
CCCAATCACCGCGATGTTTATCGCAGCCTTTGTGGCTTATTACCTGCTTGGTCTTCGCAACAAGATGACCATGGGCACCT
TGCTGACTAAAACCGAAGACTGTTTCGCCTCTATCGCTAACATCTTGCTGATTATCGGTGCAGGCGGCGCGTTTAACGGC
GTATTAAGTGGCAGCGGCATGGGCGACAGCCTAGCGCAAATCTTGGCAAACCTTGATATGCATCCAGTGCTACTGGCTTG
GTTAGTGGCCATTATCTTGCACGCGGCGGTGGGTTCGGCAACGGTTGCTATGATGGGCGCTACCGCGATTGTGTCGCCGT
TATTAGTGCTATACCCAGATTTGAACCCAGTTATCGTGACCTTAGCTATCGGCTCTGGCGCTATAGGTTGCACTATCGTC
ACCGACTCTTTGTTCTGGTTGGTTAAGCAGTACACCGGCGCCACAATGAAACAAACATTTATGTATTACACCAGCGCGAC
CTTTATTGCCTCACTTGTGGCACTGGCTGCGACTTTTGCACTGTCTTATGTTATTTAA

Upstream 100 bases:

>100_bases
GCGAAACGCAATTTATATCTTTTGTCAGCATTTCATTGATTGGCTTTAATAGCGCCACTTTCTAATTCCTTTTCACTCCT
TTAACTAATAGAGAAATACA

Downstream 100 bases:

>100_bases
TCCTAAAGGGGAACTGAAATGATGAACACCGAACAACTGATAAACGACTTCCCTTTGCTGACTCAGCTTATCAAGCTTGA
AGAAGTTAGCTGGTTTGAAA

Product: permease DsdX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MESQLWIIGTLLSSILLIVISIVKFKLHPFLALLLASFFVGGMMGMAPLEMIKAMESGIGGTLGFLAIVIGLGTILGKMM
EISGAAERIGITLLKSRYLSPDVIMVLVGLICGITLFVEVGVVLLIPLAFSIARKTNTSLLKLAIPLCTALMAVHCIVPP
HPAALFVTNALGADVGSVIIWGLLIGLLASLIGGPLFLKLFGDKLPHLSVPAEFSEVSTRKESELPSLGTTLFTILLPII
LMLVKTVAELYMEPGTALYTTLEFIGNPITAMFIAAFVAYYLLGLRNKMTMGTLLTKTEDCFASIANILLIIGAGGAFNG
VLSGSGMGDSLAQILANLDMHPVLLAWLVAIILHAAVGSATVAMMGATAIVSPLLVLYPDLNPVIVTLAIGSGAIGCTIV
TDSLFWLVKQYTGATMKQTFMYYTSATFIASLVALAATFALSYVI

Sequences:

>Translated_445_residues
MESQLWIIGTLLSSILLIVISIVKFKLHPFLALLLASFFVGGMMGMAPLEMIKAMESGIGGTLGFLAIVIGLGTILGKMM
EISGAAERIGITLLKSRYLSPDVIMVLVGLICGITLFVEVGVVLLIPLAFSIARKTNTSLLKLAIPLCTALMAVHCIVPP
HPAALFVTNALGADVGSVIIWGLLIGLLASLIGGPLFLKLFGDKLPHLSVPAEFSEVSTRKESELPSLGTTLFTILLPII
LMLVKTVAELYMEPGTALYTTLEFIGNPITAMFIAAFVAYYLLGLRNKMTMGTLLTKTEDCFASIANILLIIGAGGAFNG
VLSGSGMGDSLAQILANLDMHPVLLAWLVAIILHAAVGSATVAMMGATAIVSPLLVLYPDLNPVIVTLAIGSGAIGCTIV
TDSLFWLVKQYTGATMKQTFMYYTSATFIASLVALAATFALSYVI
>Mature_445_residues
MESQLWIIGTLLSSILLIVISIVKFKLHPFLALLLASFFVGGMMGMAPLEMIKAMESGIGGTLGFLAIVIGLGTILGKMM
EISGAAERIGITLLKSRYLSPDVIMVLVGLICGITLFVEVGVVLLIPLAFSIARKTNTSLLKLAIPLCTALMAVHCIVPP
HPAALFVTNALGADVGSVIIWGLLIGLLASLIGGPLFLKLFGDKLPHLSVPAEFSEVSTRKESELPSLGTTLFTILLPII
LMLVKTVAELYMEPGTALYTTLEFIGNPITAMFIAAFVAYYLLGLRNKMTMGTLLTKTEDCFASIANILLIIGAGGAFNG
VLSGSGMGDSLAQILANLDMHPVLLAWLVAIILHAAVGSATVAMMGATAIVSPLLVLYPDLNPVIVTLAIGSGAIGCTIV
TDSLFWLVKQYTGATMKQTFMYYTSATFIASLVALAATFALSYVI

Specific function: Probable permease for an unknown substrate [H]

COG id: COG2610

COG function: function code GE; H+/gluconate symporter and related permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gntP permease family [H]

Homologues:

Organism=Escherichia coli, GI1788707, Length=445, Percent_Identity=75.9550561797753, Blast_Score=679, Evalue=0.0,
Organism=Escherichia coli, GI48994935, Length=436, Percent_Identity=34.1743119266055, Blast_Score=245, Evalue=3e-66,
Organism=Escherichia coli, GI1790716, Length=440, Percent_Identity=34.0909090909091, Blast_Score=244, Evalue=6e-66,
Organism=Escherichia coli, GI2367370, Length=413, Percent_Identity=35.3510895883777, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI1790776, Length=430, Percent_Identity=33.2558139534884, Blast_Score=224, Evalue=9e-60,
Organism=Escherichia coli, GI48994939, Length=419, Percent_Identity=36.7541766109785, Blast_Score=219, Evalue=4e-58,
Organism=Escherichia coli, GI1789097, Length=452, Percent_Identity=32.3008849557522, Blast_Score=181, Evalue=6e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003474 [H]

Pfam domain/function: PF02447 GntP_permease [H]

EC number: NA

Molecular weight: Translated: 46887; Mature: 46887

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESQLWIIGTLLSSILLIVISIVKFKLHPFLALLLASFFVGGMMGMAPLEMIKAMESGIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GTLGFLAIVIGLGTILGKMMEISGAAERIGITLLKSRYLSPDVIMVLVGLICGITLFVEV
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GVVLLIPLAFSIARKTNTSLLKLAIPLCTALMAVHCIVPPHPAALFVTNALGADVGSVII
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
WGLLIGLLASLIGGPLFLKLFGDKLPHLSVPAEFSEVSTRKESELPSLGTTLFTILLPII
HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LMLVKTVAELYMEPGTALYTTLEFIGNPITAMFIAAFVAYYLLGLRNKMTMGTLLTKTED
HHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
CFASIANILLIIGAGGAFNGVLSGSGMGDSLAQILANLDMHPVLLAWLVAIILHAAVGSA
HHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TVAMMGATAIVSPLLVLYPDLNPVIVTLAIGSGAIGCTIVTDSLFWLVKQYTGATMKQTF
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
MYYTSATFIASLVALAATFALSYVI
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MESQLWIIGTLLSSILLIVISIVKFKLHPFLALLLASFFVGGMMGMAPLEMIKAMESGIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GTLGFLAIVIGLGTILGKMMEISGAAERIGITLLKSRYLSPDVIMVLVGLICGITLFVEV
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GVVLLIPLAFSIARKTNTSLLKLAIPLCTALMAVHCIVPPHPAALFVTNALGADVGSVII
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
WGLLIGLLASLIGGPLFLKLFGDKLPHLSVPAEFSEVSTRKESELPSLGTTLFTILLPII
HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LMLVKTVAELYMEPGTALYTTLEFIGNPITAMFIAAFVAYYLLGLRNKMTMGTLLTKTED
HHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
CFASIANILLIIGAGGAFNGVLSGSGMGDSLAQILANLDMHPVLLAWLVAIILHAAVGSA
HHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TVAMMGATAIVSPLLVLYPDLNPVIVTLAIGSGAIGCTIVTDSLFWLVKQYTGATMKQTF
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
MYYTSATFIASLVALAATFALSYVI
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7592420; 3275618; 9205837; 9278503; 3029015; 1659648; 12218016 [H]