| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157963234
Identifier: 157963234
GI number: 157963234
Start: 4179110
End: 4180168
Strand: Reverse
Name: 157963234
Synonym: Spea_3420
Alternate gene names: NA
Gene position: 4180168-4179110 (Counterclockwise)
Preceding gene: 157963235
Following gene: 157963232
Centisome position: 80.78
GC content: 46.84
Gene sequence:
>1059_bases TTGCAATTCGAGACTTTGAGAAAAACCCAACGGATCTGGTTTGGTTGTGTATTTGGGCTGGCCACCTCCTTAGTATTTGG CTGGTCAAACGGTATGTTTGCGGCGCTGTTACCCATGTTTGTGCTCACCCAAATTGATAAGTGGAATAGTGGCATCATAG TGCAGCTTATTGTGGGCGTCACTTGGGTCAGCATACAGGTCAGTTTTATTGTCGGTTTCTTTCAGTCAACGCCACTGTTA ATGGCGATTGCGGTGGCAATTATGCTGATGTTTAAGTGTATCGCGATGACACATAAGAGCAGTTATCTCTTTGGTTACAT TGGGCTCTTGATAGGCTCTATTCTACTTAACTATGCCAGCTACCAAGGCTTCGATTTAGAAGACTTTGTGATGGGGTTAA TCGCTTCGTCTCTGCTGACTGCCCCGGTTGTTGCGCTGGCCTTTTACTTGTTCCCTGAGCCTAGTATTAAGCTGCCGCTA TCTAGCTTAGGCAACACCAATCAGGCGAGTAGTCATATTGATAATCAGCGGAAAGATCATCTGGGCATGGTGAGGCAAGC GGCGCTGGGTTGGATTATTGCAATGGCAGCATTTATCTTGTTTCAGGTAGCCACTCTTAATGACTCCTTATCGGCTCAAG CCTCAATTTTGATTGTGTTGGCTCCCATGACCTTGATAGGCTCGATGGCGGTGGCTAAAATTCGTATTATAGGTACATTT CTTGGTTGCTTAGCCGGGATGCTCCTGCAGCTAACCCTATACAGTCTGGCTAATAACCTGTTGCTGTTTGTACTCGGCTA CGCAATTGCTGCGGCTATTTTTTGTCGCTGGCTGGCTATCGGCGGCATTAAAGCGGGTATCGGTTTCTCGGCGATGTCTG CATTGACTGTACCGCTGACTACCGCTTTTGTGCCTGAGCAGCAAGATGCTTTCTTCTCTATCTGTTATCGCTTTAGTTCT ATTGTGGTAGCAGTAGTGGTTACCTCGCTAATGATTTGGGTCGTACATCATTTGTTAGTGCGGCTGATAAAGCCTAAAGC GCCAGCGCAGGTGATTTAG
Upstream 100 bases:
>100_bases GCCAAGACTCAAATTAAGATCGTGAGTTGGCTTCACTTCATTTATTAACATTAGTTATTAACATTCGTTATTAACTTTGC TGACGACCAGAGGCTACATT
Downstream 100 bases:
>100_bases GCGTAAATAATACCAATTAGTTTAAGGCGTAACAGCCAAGTTCTAGGAGCGAAGACTCCCGGACTAGCTTTATGTTATGA GAGGTTTTCGACCAATGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: Facilitator Superfamily Permease
Number of amino acids: Translated: 352; Mature: 352
Protein sequence:
>352_residues MQFETLRKTQRIWFGCVFGLATSLVFGWSNGMFAALLPMFVLTQIDKWNSGIIVQLIVGVTWVSIQVSFIVGFFQSTPLL MAIAVAIMLMFKCIAMTHKSSYLFGYIGLLIGSILLNYASYQGFDLEDFVMGLIASSLLTAPVVALAFYLFPEPSIKLPL SSLGNTNQASSHIDNQRKDHLGMVRQAALGWIIAMAAFILFQVATLNDSLSAQASILIVLAPMTLIGSMAVAKIRIIGTF LGCLAGMLLQLTLYSLANNLLLFVLGYAIAAAIFCRWLAIGGIKAGIGFSAMSALTVPLTTAFVPEQQDAFFSICYRFSS IVVAVVVTSLMIWVVHHLLVRLIKPKAPAQVI
Sequences:
>Translated_352_residues MQFETLRKTQRIWFGCVFGLATSLVFGWSNGMFAALLPMFVLTQIDKWNSGIIVQLIVGVTWVSIQVSFIVGFFQSTPLL MAIAVAIMLMFKCIAMTHKSSYLFGYIGLLIGSILLNYASYQGFDLEDFVMGLIASSLLTAPVVALAFYLFPEPSIKLPL SSLGNTNQASSHIDNQRKDHLGMVRQAALGWIIAMAAFILFQVATLNDSLSAQASILIVLAPMTLIGSMAVAKIRIIGTF LGCLAGMLLQLTLYSLANNLLLFVLGYAIAAAIFCRWLAIGGIKAGIGFSAMSALTVPLTTAFVPEQQDAFFSICYRFSS IVVAVVVTSLMIWVVHHLLVRLIKPKAPAQVI >Mature_352_residues MQFETLRKTQRIWFGCVFGLATSLVFGWSNGMFAALLPMFVLTQIDKWNSGIIVQLIVGVTWVSIQVSFIVGFFQSTPLL MAIAVAIMLMFKCIAMTHKSSYLFGYIGLLIGSILLNYASYQGFDLEDFVMGLIASSLLTAPVVALAFYLFPEPSIKLPL SSLGNTNQASSHIDNQRKDHLGMVRQAALGWIIAMAAFILFQVATLNDSLSAQASILIVLAPMTLIGSMAVAKIRIIGTF LGCLAGMLLQLTLYSLANNLLLFVLGYAIAAAIFCRWLAIGGIKAGIGFSAMSALTVPLTTAFVPEQQDAFFSICYRFSS IVVAVVVTSLMIWVVHHLLVRLIKPKAPAQVI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38267; Mature: 38267
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFETLRKTQRIWFGCVFGLATSLVFGWSNGMFAALLPMFVLTQIDKWNSGIIVQLIVGV CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH TWVSIQVSFIVGFFQSTPLLMAIAVAIMLMFKCIAMTHKSSYLFGYIGLLIGSILLNYAS HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH YQGFDLEDFVMGLIASSLLTAPVVALAFYLFPEPSIKLPLSSLGNTNQASSHIDNQRKDH CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH LGMVRQAALGWIIAMAAFILFQVATLNDSLSAQASILIVLAPMTLIGSMAVAKIRIIGTF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHH LGCLAGMLLQLTLYSLANNLLLFVLGYAIAAAIFCRWLAIGGIKAGIGFSAMSALTVPLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHH TAFVPEQQDAFFSICYRFSSIVVAVVVTSLMIWVVHHLLVRLIKPKAPAQVI HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MQFETLRKTQRIWFGCVFGLATSLVFGWSNGMFAALLPMFVLTQIDKWNSGIIVQLIVGV CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH TWVSIQVSFIVGFFQSTPLLMAIAVAIMLMFKCIAMTHKSSYLFGYIGLLIGSILLNYAS HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH YQGFDLEDFVMGLIASSLLTAPVVALAFYLFPEPSIKLPLSSLGNTNQASSHIDNQRKDH CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH LGMVRQAALGWIIAMAAFILFQVATLNDSLSAQASILIVLAPMTLIGSMAVAKIRIIGTF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHH LGCLAGMLLQLTLYSLANNLLLFVLGYAIAAAIFCRWLAIGGIKAGIGFSAMSALTVPLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHH TAFVPEQQDAFFSICYRFSSIVVAVVVTSLMIWVVHHLLVRLIKPKAPAQVI HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA