| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is btuB [H]
Identifier: 157963200
GI number: 157963200
Start: 4136672
End: 4139404
Strand: Reverse
Name: btuB [H]
Synonym: Spea_3385
Alternate gene names: 157963200
Gene position: 4139404-4136672 (Counterclockwise)
Preceding gene: 157963201
Following gene: 157963198
Centisome position: 79.99
GC content: 43.36
Gene sequence:
>2733_bases ATGAATATGACCAAGAAATTCGCACTATCGACGCTTACTGTAGCGATGATATCTTTTGCTCCAGTGACTACCACATCAGT TTTTGCGGCAGAAGAAGAGAAGATAGAAAAAATAATGGTTACAGGCTCACGCATTGGACGTGCAGAGCTTGAATCTAGCT CGCCCATCACCGTAGTAACAAAAGTGCAGCTAGATAACCTAGGGGTTACCGATGTCAGCGCAGCATTACGTCGTTTGCCT GCAATAACTGGAGCCACATCTAACAACCAAAGTAGCGCCGGTGCTGTCAATATTCAAACAGCAACGCTACGTGGTATTGA AGCGACTAACACCTTGGTGCTTTTAAATGGTCGCCGTATGGTGGGTTCTAATGAAGATGGCTTGGTTGATCTTTCATCTA TTCCATTTGAGGCCGTTTCTCAAATTGAGGTCTTAAAAGATGGTGCATCTGCAATTTATGGTTCAGATGCCATTGCCGGC GTAGTAAATATTATTACCTATCAAAATTATGAAGGTTTTGAGGTCAACGCTCGCTATGGGGTGTCATCTGAAGGTGATGC ACAAGAGCGTGAAGTTGGCTTACTTATGGGCTTTAGTACCGACAAAGGTAGCCTTATGGTTGCCGCTTCCACGAGCAATA ATTCAGGCTGGGAAGAGAAAGACCGTTACATGACCCAAGATACTGATCAAAGCTATCTAGGGGGAGGTGATACCAGTTCA GGGACGACACCATTTGCGCGTTTATCCGGTTTTGGGCTTGATCCGAGTGAGACATGGACAGTCCTAGATGCCAACAATCC CTCTGCAGTGACTCCGTTCGATTACGATACCATGGGGTACAATTATCGTGCCGCTCAGTCTGGCGCCAATGATAATCAAA CCACGAGTGTTTTTGTCAGCGGTGATTATGAGCTTACTGATGATATGCTATTTTTTACCGAGCTATCCTTTCATGATGGC TTTGTGCAAGGTAACCAAGCGCCTCCAGGTACAGATACAGGCTGGTATGGAGATAATGTTGATACCCCGAATGCATTTAA ACGTTACCCAGATGCTGATGGAAACAACTTTGGCGTGGGCGCAAACCAAAAATACAACCCATTTGGCATAGCGGGTAACG TGAGCCGTCGCTTTAGTGAGTATGGCTCGCGCATTTATAAAACAGATAACACTGTTCAGCGATATACCTTAGGCTTAAAA GGCGCCATCTTTGATGAGTATGACTGGGAGGTTAGCTACTCTAGCCAGAGTGCGGAGTTGGTCCAGCGAGGTGGTGCACA GCCATCTATTATGCAAATTGAGCGTGCACTTTCTGATGAATGTGAAACAGCGGCAGATCCAAGTTGTGTCGCGTTAAATG TGTTTGGCCCAGAGGGTTCAATCACGACTGAAATGCTTGATTTTATCAATACAACCGCTCCAGTAACGACCAATAAAAAT GATTTGATGTTTATTCAGGCTCATATCTCAGGACCGATAGTGTCTTTGCCTGCTGGCGACTTGATGTTCTCGTCAGGTGT TGAGTATCGCGAAGATCAACTTTCTTTAGAAGTAGATCAAGCGCAACGTACTGCAACATTTGATGTATCTTGGGGCGGCT CTAGCACTCCTGTTATATCCCCTGTACGTGAAATCTCAGAGTTTTATTTAGAGCTAGCGGTTCCAGTGCTTGATAACTTA GATATTGAACTCGCTGCACGTTACAGTGATTACAGTGATATTGACGAAAGTACCACAAACCCAAAAGTGGGTGTTATTTA TCAGCCGCTTGATATGCTGAAGTTGCGAGGAAGCTACAGTACCGGTTTCCGCGCTCCAACCATGGCGCAAATGTATCAAG GGCGAACATCATCGATCAATACCAACCTGTATGATCCTTGTAACCCTGGCAATGAAGCTAATTTTAGTTCTAGCAAGCCT GAGTGTGTCGCCCTTGGTTTAGACCCAGCCTTTAGTCAAAATGCGATCCAAAGCAATGACATTATTGGCGGTGGTAACCC AGACCTTAAGCCTGAAGAAGCTGAGAACACTACCTTAGGCTTAGTTATCGAGCCAATAGATAACCTTTCATTAACTCTTG ATTATTTTGCTATCGAACAAACTAACGTGGTGTTTGCAAGTTCTCGCTATGTAATCGATCAAAACTTAGCGGGCAACCCA ACTTATGCTGGTGATGTTATACGTAGCAACAATGGTACGGGATATATTCAAACGATTTATTCGCCAGCGAATAATATTGC ATCACGTAACTTATCTGGTTACGACTTGAATGCAAATTATCGTTTCGAGACGGATATTGGTGATTGGAGCATTAACTTCG ATGGTACGTATTTAAGTGAGTTTGAAGTTCAAGATACCAGTGATTCAGCATTTAGAGATATTACGGGTACTTATGATCCA GCATTTGGTAGCCTTCCTGAGTATAAGGCGAATATCCAAATTGATTGGACAATGGGGAACTACCGTGCGACTTGGGATGC TAATTACAATTCAGAAATCTTTGCCGGTGAAGCTACAGAAGAATTTGAAGCAGATATCATGTCATCGACAGTATTCCATA ATATGCAAGTAGGCTATTTTGTTGATGCTATTGGTGTCGATTTACATGCAGGCATTCAAAATGTGTTTGATAAAGAGCCT CCATTCTTAAGGGCTAACGGAACATCGACTGATGATAATTTATATTCATTCCGTGGCCGATTCTTTTACTTTGGTTTGAA AAAATCATTTTAA
Upstream 100 bases:
>100_bases GTTGCAACCCACAATGGTATACAGTATACATTGGTGCAACCTTAACAAGGTTGCAACATTTTTATGGCGATAAAGTGGCA AACAAATCTAAAGGAAGAAG
Downstream 100 bases:
>100_bases TAATTTAACCAGTCAAAAAAGCCACACTTTTTGAAAGTGTGGCTTTTTTATTAGCTCTGCCTCGTCCTAGAATCGTCCAT CTTTAGATTTGCAGAAACCG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 910; Mature: 910
Protein sequence:
>910_residues MNMTKKFALSTLTVAMISFAPVTTTSVFAAEEEKIEKIMVTGSRIGRAELESSSPITVVTKVQLDNLGVTDVSAALRRLP AITGATSNNQSSAGAVNIQTATLRGIEATNTLVLLNGRRMVGSNEDGLVDLSSIPFEAVSQIEVLKDGASAIYGSDAIAG VVNIITYQNYEGFEVNARYGVSSEGDAQEREVGLLMGFSTDKGSLMVAASTSNNSGWEEKDRYMTQDTDQSYLGGGDTSS GTTPFARLSGFGLDPSETWTVLDANNPSAVTPFDYDTMGYNYRAAQSGANDNQTTSVFVSGDYELTDDMLFFTELSFHDG FVQGNQAPPGTDTGWYGDNVDTPNAFKRYPDADGNNFGVGANQKYNPFGIAGNVSRRFSEYGSRIYKTDNTVQRYTLGLK GAIFDEYDWEVSYSSQSAELVQRGGAQPSIMQIERALSDECETAADPSCVALNVFGPEGSITTEMLDFINTTAPVTTNKN DLMFIQAHISGPIVSLPAGDLMFSSGVEYREDQLSLEVDQAQRTATFDVSWGGSSTPVISPVREISEFYLELAVPVLDNL DIELAARYSDYSDIDESTTNPKVGVIYQPLDMLKLRGSYSTGFRAPTMAQMYQGRTSSINTNLYDPCNPGNEANFSSSKP ECVALGLDPAFSQNAIQSNDIIGGGNPDLKPEEAENTTLGLVIEPIDNLSLTLDYFAIEQTNVVFASSRYVIDQNLAGNP TYAGDVIRSNNGTGYIQTIYSPANNIASRNLSGYDLNANYRFETDIGDWSINFDGTYLSEFEVQDTSDSAFRDITGTYDP AFGSLPEYKANIQIDWTMGNYRATWDANYNSEIFAGEATEEFEADIMSSTVFHNMQVGYFVDAIGVDLHAGIQNVFDKEP PFLRANGTSTDDNLYSFRGRFFYFGLKKSF
Sequences:
>Translated_910_residues MNMTKKFALSTLTVAMISFAPVTTTSVFAAEEEKIEKIMVTGSRIGRAELESSSPITVVTKVQLDNLGVTDVSAALRRLP AITGATSNNQSSAGAVNIQTATLRGIEATNTLVLLNGRRMVGSNEDGLVDLSSIPFEAVSQIEVLKDGASAIYGSDAIAG VVNIITYQNYEGFEVNARYGVSSEGDAQEREVGLLMGFSTDKGSLMVAASTSNNSGWEEKDRYMTQDTDQSYLGGGDTSS GTTPFARLSGFGLDPSETWTVLDANNPSAVTPFDYDTMGYNYRAAQSGANDNQTTSVFVSGDYELTDDMLFFTELSFHDG FVQGNQAPPGTDTGWYGDNVDTPNAFKRYPDADGNNFGVGANQKYNPFGIAGNVSRRFSEYGSRIYKTDNTVQRYTLGLK GAIFDEYDWEVSYSSQSAELVQRGGAQPSIMQIERALSDECETAADPSCVALNVFGPEGSITTEMLDFINTTAPVTTNKN DLMFIQAHISGPIVSLPAGDLMFSSGVEYREDQLSLEVDQAQRTATFDVSWGGSSTPVISPVREISEFYLELAVPVLDNL DIELAARYSDYSDIDESTTNPKVGVIYQPLDMLKLRGSYSTGFRAPTMAQMYQGRTSSINTNLYDPCNPGNEANFSSSKP ECVALGLDPAFSQNAIQSNDIIGGGNPDLKPEEAENTTLGLVIEPIDNLSLTLDYFAIEQTNVVFASSRYVIDQNLAGNP TYAGDVIRSNNGTGYIQTIYSPANNIASRNLSGYDLNANYRFETDIGDWSINFDGTYLSEFEVQDTSDSAFRDITGTYDP AFGSLPEYKANIQIDWTMGNYRATWDANYNSEIFAGEATEEFEADIMSSTVFHNMQVGYFVDAIGVDLHAGIQNVFDKEP PFLRANGTSTDDNLYSFRGRFFYFGLKKSF >Mature_910_residues MNMTKKFALSTLTVAMISFAPVTTTSVFAAEEEKIEKIMVTGSRIGRAELESSSPITVVTKVQLDNLGVTDVSAALRRLP AITGATSNNQSSAGAVNIQTATLRGIEATNTLVLLNGRRMVGSNEDGLVDLSSIPFEAVSQIEVLKDGASAIYGSDAIAG VVNIITYQNYEGFEVNARYGVSSEGDAQEREVGLLMGFSTDKGSLMVAASTSNNSGWEEKDRYMTQDTDQSYLGGGDTSS GTTPFARLSGFGLDPSETWTVLDANNPSAVTPFDYDTMGYNYRAAQSGANDNQTTSVFVSGDYELTDDMLFFTELSFHDG FVQGNQAPPGTDTGWYGDNVDTPNAFKRYPDADGNNFGVGANQKYNPFGIAGNVSRRFSEYGSRIYKTDNTVQRYTLGLK GAIFDEYDWEVSYSSQSAELVQRGGAQPSIMQIERALSDECETAADPSCVALNVFGPEGSITTEMLDFINTTAPVTTNKN DLMFIQAHISGPIVSLPAGDLMFSSGVEYREDQLSLEVDQAQRTATFDVSWGGSSTPVISPVREISEFYLELAVPVLDNL DIELAARYSDYSDIDESTTNPKVGVIYQPLDMLKLRGSYSTGFRAPTMAQMYQGRTSSINTNLYDPCNPGNEANFSSSKP ECVALGLDPAFSQNAIQSNDIIGGGNPDLKPEEAENTTLGLVIEPIDNLSLTLDYFAIEQTNVVFASSRYVIDQNLAGNP TYAGDVIRSNNGTGYIQTIYSPANNIASRNLSGYDLNANYRFETDIGDWSINFDGTYLSEFEVQDTSDSAFRDITGTYDP AFGSLPEYKANIQIDWTMGNYRATWDANYNSEIFAGEATEEFEADIMSSTVFHNMQVGYFVDAIGVDLHAGIQNVFDKEP PFLRANGTSTDDNLYSFRGRFFYFGLKKSF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=169, Percent_Identity=33.1360946745562, Blast_Score=94, Evalue=4e-20, Organism=Escherichia coli, GI1788478, Length=165, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=3e-14,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 99062; Mature: 99062
Theoretical pI: Translated: 3.99; Mature: 3.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMTKKFALSTLTVAMISFAPVTTTSVFAAEEEKIEKIMVTGSRIGRAELESSSPITVVT CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHEEEEECCCCCCCCCCCCCCEEEEE KVQLDNLGVTDVSAALRRLPAITGATSNNQSSAGAVNIQTATLRGIEATNTLVLLNGRRM EEEECCCCCHHHHHHHHHCCCEECCCCCCCCCCCEEEEEEEEEECEECCCEEEEEECCEE VGSNEDGLVDLSSIPFEAVSQIEVLKDGASAIYGSDAIAGVVNIITYQNYEGFEVNARYG ECCCCCCEEEECCCCHHHHHHHHHHHCCCHHEECCHHHHHHEEEEEECCCCCEEEEEEEC VSSEGDAQEREVGLLMGFSTDKGSLMVAASTSNNSGWEEKDRYMTQDTDQSYLGGGDTSS CCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCC GTTPFARLSGFGLDPSETWTVLDANNPSAVTPFDYDTMGYNYRAAQSGANDNQTTSVFVS CCCCHHHHCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCEEECCCCCCCCCEEEEEEE GDYELTDDMLFFTELSFHDGFVQGNQAPPGTDTGWYGDNVDTPNAFKRYPDADGNNFGVG CCCEECCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC ANQKYNPFGIAGNVSRRFSEYGSRIYKTDNTVQRYTLGLKGAIFDEYDWEVSYSSQSAEL CCCCCCCCEECCCHHHHHHHHCCEEEECCCCEEEEEECCCCEEECCCCCEEEECCCHHHH VQRGGAQPSIMQIERALSDECETAADPSCVALNVFGPEGSITTEMLDFINTTAPVTTNKN HHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEECCC DLMFIQAHISGPIVSLPAGDLMFSSGVEYREDQLSLEVDQAQRTATFDVSWGGSSTPVIS CEEEEEEECCCCEEECCCCCEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCHH PVREISEFYLELAVPVLDNLDIELAARYSDYSDIDESTTNPKVGVIYQPLDMLKLRGSYS HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHEECCCCC TGFRAPTMAQMYQGRTSSINTNLYDPCNPGNEANFSSSKPECVALGLDPAFSQNAIQSND CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC IIGGGNPDLKPEEAENTTLGLVIEPIDNLSLTLDYFAIEQTNVVFASSRYVIDQNLAGNP EECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCEEEEECEEEEECCCCCCC TYAGDVIRSNNGTGYIQTIYSPANNIASRNLSGYDLNANYRFETDIGDWSINFDGTYLSE CCCCCEEECCCCCEEEEEEECCCHHHHHCCCCCEECCCCEEEECCCCCEEEECCCEEEEE FEVQDTSDSAFRDITGTYDPAFGSLPEYKANIQIDWTMGNYRATWDANYNSEIFAGEATE EEECCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEECCCCCCEEEECCCCH EFEADIMSSTVFHNMQVGYFVDAIGVDLHAGIQNVFDKEPPFLRANGTSTDDNLYSFRGR HHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCEEECCE FFYFGLKKSF EEEEEEECCC >Mature Secondary Structure MNMTKKFALSTLTVAMISFAPVTTTSVFAAEEEKIEKIMVTGSRIGRAELESSSPITVVT CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHEEEEECCCCCCCCCCCCCCEEEEE KVQLDNLGVTDVSAALRRLPAITGATSNNQSSAGAVNIQTATLRGIEATNTLVLLNGRRM EEEECCCCCHHHHHHHHHCCCEECCCCCCCCCCCEEEEEEEEEECEECCCEEEEEECCEE VGSNEDGLVDLSSIPFEAVSQIEVLKDGASAIYGSDAIAGVVNIITYQNYEGFEVNARYG ECCCCCCEEEECCCCHHHHHHHHHHHCCCHHEECCHHHHHHEEEEEECCCCCEEEEEEEC VSSEGDAQEREVGLLMGFSTDKGSLMVAASTSNNSGWEEKDRYMTQDTDQSYLGGGDTSS CCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCC GTTPFARLSGFGLDPSETWTVLDANNPSAVTPFDYDTMGYNYRAAQSGANDNQTTSVFVS CCCCHHHHCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCEEECCCCCCCCCEEEEEEE GDYELTDDMLFFTELSFHDGFVQGNQAPPGTDTGWYGDNVDTPNAFKRYPDADGNNFGVG CCCEECCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC ANQKYNPFGIAGNVSRRFSEYGSRIYKTDNTVQRYTLGLKGAIFDEYDWEVSYSSQSAEL CCCCCCCCEECCCHHHHHHHHCCEEEECCCCEEEEEECCCCEEECCCCCEEEECCCHHHH VQRGGAQPSIMQIERALSDECETAADPSCVALNVFGPEGSITTEMLDFINTTAPVTTNKN HHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEECCC DLMFIQAHISGPIVSLPAGDLMFSSGVEYREDQLSLEVDQAQRTATFDVSWGGSSTPVIS CEEEEEEECCCCEEECCCCCEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCHH PVREISEFYLELAVPVLDNLDIELAARYSDYSDIDESTTNPKVGVIYQPLDMLKLRGSYS HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHEECCCCC TGFRAPTMAQMYQGRTSSINTNLYDPCNPGNEANFSSSKPECVALGLDPAFSQNAIQSND CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC IIGGGNPDLKPEEAENTTLGLVIEPIDNLSLTLDYFAIEQTNVVFASSRYVIDQNLAGNP EECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCEEEEECEEEEECCCCCCC TYAGDVIRSNNGTGYIQTIYSPANNIASRNLSGYDLNANYRFETDIGDWSINFDGTYLSE CCCCCEEECCCCCEEEEEEECCCHHHHHCCCCCEECCCCEEEECCCCCEEEECCCEEEEE FEVQDTSDSAFRDITGTYDPAFGSLPEYKANIQIDWTMGNYRATWDANYNSEIFAGEATE EEECCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEECCCCCCEEEECCCCH EFEADIMSSTVFHNMQVGYFVDAIGVDLHAGIQNVFDKEPPFLRANGTSTDDNLYSFRGR HHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCEEECCE FFYFGLKKSF EEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA