| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is phsA [H]
Identifier: 157963005
GI number: 157963005
Start: 3908137
End: 3910407
Strand: Reverse
Name: phsA [H]
Synonym: Spea_3188
Alternate gene names: 157963005
Gene position: 3910407-3908137 (Counterclockwise)
Preceding gene: 157963006
Following gene: 157963004
Centisome position: 75.57
GC content: 48.83
Gene sequence:
>2271_bases ATGTTGTCTCGCCGCGATTTTTTGGCAAAAGGTAGCGCCTTTTGCGCTATAACAGTTTATGCCCCCGGAACGTTAGGGGC GCAAAGTAAAATATTAACACCAGCAACGCCATTTATTAAAGAAATAAACAGTATCTGCGAAATGTGTTCAACTCGGTGTC CCATTACCGTTGAAAGCAGACTGGGCAAGTTATTCATTCGGGGGAACCTGAACGCTAAGAGCTTTGGCGGTAAGGTATGC GCAAGAGGTACATCAGGTAGCAAGCTGCTCAATGATCCTCATCGATTGGTAAAACCGATTAAGCGAACCGGACCTCGAGG TTCGGGGCAGTGGCAGGAAATTGAGTGGGAAGAAGCATACCAACTTATTGCGGTTAACCTAAATCAAGTGCGTGACCAAT ACGGACCAGAAGCAATCGCAGTCTCGAGTAAATCTGGCTCATTATCCAATCATGCCTTTCACTTTGGTAAAGCCATTGGC ACCCCAAATATCTTTTCACACGGCTCAACATGTCCGATCTCCTATGCGGTTGCCGCCAAGGTGATGTTCGGCAATGAGCT TAAGCTGGATTTAGAAAACAGCAAATACATACTTAACTTCGGTCATAACCTGTATGAAGGGGTCAATATGTCAATGACCC GAGGCTTGTTGGCGGCACAGGAAAAAGGCACGGTCAAGGTCGTGGTGTTTGAGCCTAGATTATCGGTGATGGCTGACAAA GCAGATGAATGGCATGCCATTAAACCCGGCACAGACATTGCCGTTGTACTCGCTCTGAGTCATGTATTAATAGAAGAGCA GTTGTACGATGAATCTTTTGTTCAGCAATATGTTAGTGGCTTCGAGGATTTTGCGACTTCGATGGCGCGATACAGCCCTG AGTGGGCAAGTGAGGTATGCGGGATTTCAGCTGGCGACATTCGTCGTATCGCCCGAGAACTCGCCGCAGCCGCCCCCGCA GCGATAGCGGACCATGGCCATCGCTGCACCTTTACACCTGAAGAGTTCGATCTTCGGCGTGGTATCTATGCCATAAACGT GCTGCTGGGTAATATTGAACGTAAAGGAGGTGTGTATTTCGCTAAGAATTCTAAGCTGTACAACAAACTTGCTGGCGAAG CGGTAGCCCCATCACTCGAAAAAATAAAAGTAGAAGGTTTACCAACCCCAGTGTTACCACGTATCGATTTAGCCCAAGCC CAGTTTAAGTATGCTGCCAAAGCGGGTGGGCTCTATCAATCTATTATCCCTGCTGCCTTGCAGCAACAGCCCTACGCGAT AAAGGCATGGGTGATGTCACGTTCTAACCCTGTGCAAACCGTCACCGATCGAACCCAAGTTCAAAAAGCACTCGAGGCGA TGGATTTTGTTGTCGCCTGTGACGTATATATTAGCGAGAGCGCGGCCTATGCCGACGTTGTTCTGCCTGAGTCCACTTAT CTTGAGCGTGACGAAGACATCAGTGACTATTCTGCTAAGAGCCCAGCCTACGCCTTGCGTCAGCAAGCAACCGATACCAT AGGTAACACTCGACCAAGTTGGCAAATATTTAAAGAGATCGCTGACGCAATGGCGCTGGGACAATTTTTTCCTTGGCAAG ATATTGCTGACTATCAACAGCGTCAGGTTGCAAACAACCCGGAATTATTACCGCAACTTAGAAAAGAAGGTTACCTCTCA TTTGGCATCCCACTGTTGATGCGAGAACCAGATATGGTGGCGAAGTTTCGCCAGCACTATCCTAATGCGCAGCCTGTCTC AGAGCGTGGCGACTACGGTCATCAGCTCCAATTCACGACTCCAAGTGGCAAGATTGAATTGAGCTCTCCTAGTCTCGAAA AGATAGCCCCAGGCCGCAGTGTGATTAGCTACCGCCCCGTGACGCTAAAGCAGCCTGGTGAGCTGTACTTTATTCAAGGA AAGTCTGCATTGCATACCAACGCAGCTACTCAAAATATCCCACTGCTTTACGACTTGCAGCCAGATAACCCTGTCTGGAT CCATCCAGACACTGCTGCCAAACTCGGGATAAGTGATGGTGATAGCATCACCATCACTAGTCAGGTGGGAGAGGAGCAAG GTACAGCCAAGGTAACGCTTGGGATCCGCAAAGATACCGTTTTCGCACATATGGGTTTTGGCAGTAAGAACCAAGAACTC ACACGGGCCTTCGGTAAAGGAGTGCATTGCGGCGCTTTGTTACCCCATGCTACCGCAGCCATTACAGGCAGTAATGTTCA TACCACGGGCGTCACTATCAGACGTGTGTAA
Upstream 100 bases:
>100_bases ATTGGGGCAGGCGTACTATGCGTACAGCCGGCTTCTCTTCGTATAAAAAATAATTTCTTTTAAATCTGATGGTTATAAAC GTGAAAAGAGAGGTAAGAAC
Downstream 100 bases:
>100_bases TGTGTATTTAGTTAAACTAACAAGGAGCTACTTTACTTCAACCAAGGCAACAGTATGTGTTGGAGTAGAGTGGGGGGAAC GCAATGAACGAAAAATATGT
Product: molybdopterin oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 756; Mature: 756
Protein sequence:
>756_residues MLSRRDFLAKGSAFCAITVYAPGTLGAQSKILTPATPFIKEINSICEMCSTRCPITVESRLGKLFIRGNLNAKSFGGKVC ARGTSGSKLLNDPHRLVKPIKRTGPRGSGQWQEIEWEEAYQLIAVNLNQVRDQYGPEAIAVSSKSGSLSNHAFHFGKAIG TPNIFSHGSTCPISYAVAAKVMFGNELKLDLENSKYILNFGHNLYEGVNMSMTRGLLAAQEKGTVKVVVFEPRLSVMADK ADEWHAIKPGTDIAVVLALSHVLIEEQLYDESFVQQYVSGFEDFATSMARYSPEWASEVCGISAGDIRRIARELAAAAPA AIADHGHRCTFTPEEFDLRRGIYAINVLLGNIERKGGVYFAKNSKLYNKLAGEAVAPSLEKIKVEGLPTPVLPRIDLAQA QFKYAAKAGGLYQSIIPAALQQQPYAIKAWVMSRSNPVQTVTDRTQVQKALEAMDFVVACDVYISESAAYADVVLPESTY LERDEDISDYSAKSPAYALRQQATDTIGNTRPSWQIFKEIADAMALGQFFPWQDIADYQQRQVANNPELLPQLRKEGYLS FGIPLLMREPDMVAKFRQHYPNAQPVSERGDYGHQLQFTTPSGKIELSSPSLEKIAPGRSVISYRPVTLKQPGELYFIQG KSALHTNAATQNIPLLYDLQPDNPVWIHPDTAAKLGISDGDSITITSQVGEEQGTAKVTLGIRKDTVFAHMGFGSKNQEL TRAFGKGVHCGALLPHATAAITGSNVHTTGVTIRRV
Sequences:
>Translated_756_residues MLSRRDFLAKGSAFCAITVYAPGTLGAQSKILTPATPFIKEINSICEMCSTRCPITVESRLGKLFIRGNLNAKSFGGKVC ARGTSGSKLLNDPHRLVKPIKRTGPRGSGQWQEIEWEEAYQLIAVNLNQVRDQYGPEAIAVSSKSGSLSNHAFHFGKAIG TPNIFSHGSTCPISYAVAAKVMFGNELKLDLENSKYILNFGHNLYEGVNMSMTRGLLAAQEKGTVKVVVFEPRLSVMADK ADEWHAIKPGTDIAVVLALSHVLIEEQLYDESFVQQYVSGFEDFATSMARYSPEWASEVCGISAGDIRRIARELAAAAPA AIADHGHRCTFTPEEFDLRRGIYAINVLLGNIERKGGVYFAKNSKLYNKLAGEAVAPSLEKIKVEGLPTPVLPRIDLAQA QFKYAAKAGGLYQSIIPAALQQQPYAIKAWVMSRSNPVQTVTDRTQVQKALEAMDFVVACDVYISESAAYADVVLPESTY LERDEDISDYSAKSPAYALRQQATDTIGNTRPSWQIFKEIADAMALGQFFPWQDIADYQQRQVANNPELLPQLRKEGYLS FGIPLLMREPDMVAKFRQHYPNAQPVSERGDYGHQLQFTTPSGKIELSSPSLEKIAPGRSVISYRPVTLKQPGELYFIQG KSALHTNAATQNIPLLYDLQPDNPVWIHPDTAAKLGISDGDSITITSQVGEEQGTAKVTLGIRKDTVFAHMGFGSKNQEL TRAFGKGVHCGALLPHATAAITGSNVHTTGVTIRRV >Mature_756_residues MLSRRDFLAKGSAFCAITVYAPGTLGAQSKILTPATPFIKEINSICEMCSTRCPITVESRLGKLFIRGNLNAKSFGGKVC ARGTSGSKLLNDPHRLVKPIKRTGPRGSGQWQEIEWEEAYQLIAVNLNQVRDQYGPEAIAVSSKSGSLSNHAFHFGKAIG TPNIFSHGSTCPISYAVAAKVMFGNELKLDLENSKYILNFGHNLYEGVNMSMTRGLLAAQEKGTVKVVVFEPRLSVMADK ADEWHAIKPGTDIAVVLALSHVLIEEQLYDESFVQQYVSGFEDFATSMARYSPEWASEVCGISAGDIRRIARELAAAAPA AIADHGHRCTFTPEEFDLRRGIYAINVLLGNIERKGGVYFAKNSKLYNKLAGEAVAPSLEKIKVEGLPTPVLPRIDLAQA QFKYAAKAGGLYQSIIPAALQQQPYAIKAWVMSRSNPVQTVTDRTQVQKALEAMDFVVACDVYISESAAYADVVLPESTY LERDEDISDYSAKSPAYALRQQATDTIGNTRPSWQIFKEIADAMALGQFFPWQDIADYQQRQVANNPELLPQLRKEGYLS FGIPLLMREPDMVAKFRQHYPNAQPVSERGDYGHQLQFTTPSGKIELSSPSLEKIAPGRSVISYRPVTLKQPGELYFIQG KSALHTNAATQNIPLLYDLQPDNPVWIHPDTAAKLGISDGDSITITSQVGEEQGTAKVTLGIRKDTVFAHMGFGSKNQEL TRAFGKGVHCGALLPHATAAITGSNVHTTGVTIRRV
Specific function: Oxidoreductase which produces hydrogen sulfide from thiosulfate (Potential) [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasm Face Of The Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787870, Length=728, Percent_Identity=26.0989010989011, Blast_Score=177, Evalue=2e-45, Organism=Escherichia coli, GI87081797, Length=741, Percent_Identity=25.7759784075574, Blast_Score=176, Evalue=5e-45, Organism=Escherichia coli, GI171474008, Length=775, Percent_Identity=25.8064516129032, Blast_Score=170, Evalue=3e-43, Organism=Escherichia coli, GI3868721, Length=697, Percent_Identity=24.390243902439, Blast_Score=160, Evalue=3e-40, Organism=Escherichia coli, GI145693196, Length=679, Percent_Identity=24.7422680412371, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI87081994, Length=686, Percent_Identity=23.6151603498542, Blast_Score=113, Evalue=5e-26, Organism=Escherichia coli, GI1787231, Length=686, Percent_Identity=21.5743440233236, Blast_Score=100, Evalue=3e-22, Organism=Escherichia coli, GI3868719, Length=603, Percent_Identity=20.5638474295191, Blast_Score=77, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.8.99.- [C]
Molecular weight: Translated: 82781; Mature: 82781
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: PS00490 MOLYBDOPTERIN_PROK_2 ; PS00932 MOLYBDOPTERIN_PROK_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSRRDFLAKGSAFCAITVYAPGTLGAQSKILTPATPFIKEINSICEMCSTRCPITVESR CCCCCCHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCC LGKLFIRGNLNAKSFGGKVCARGTSGSKLLNDPHRLVKPIKRTGPRGSGQWQEIEWEEAY CCEEEEEECCCCCCCCCCEEECCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH QLIAVNLNQVRDQYGPEAIAVSSKSGSLSNHAFHFGKAIGTPNIFSHGSTCPISYAVAAK EEEEECHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH VMFGNELKLDLENSKYILNFGHNLYEGVNMSMTRGLLAAQEKGTVKVVVFEPRLSVMADK EEECCEEEEEECCCEEEEECCCHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHCC ADEWHAIKPGTDIAVVLALSHVLIEEQLYDESFVQQYVSGFEDFATSMARYSPEWASEVC CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC GISAGDIRRIARELAAAAPAAIADHGHRCTFTPEEFDLRRGIYAINVLLGNIERKGGVYF CCCHHHHHHHHHHHHHHCCHHHHCCCCEECCCCHHHHHHCCCEEEEEHHHCCCCCCCEEE AKNSKLYNKLAGEAVAPSLEKIKVEGLPTPVLPRIDLAQAQFKYAAKAGGLYQSIIPAAL EECCHHHHHHCCHHHCCCHHHEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH QQQPYAIKAWVMSRSNPVQTVTDRTQVQKALEAMDFVVACDVYISESAAYADVVLPESTY HCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEECCCCHH LERDEDISDYSAKSPAYALRQQATDTIGNTRPSWQIFKEIADAMALGQFFPWQDIADYQQ CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH RQVANNPELLPQLRKEGYLSFGIPLLMREPDMVAKFRQHYPNAQPVSERGDYGHQLQFTT HHHCCCCHHHHHHHHCCCEEECCEEEECCCHHHHHHHHHCCCCCCCHHCCCCCCEEEEEC PSGKIELSSPSLEKIAPGRSVISYRPVTLKQPGELYFIQGKSALHTNAATQNIPLLYDLQ CCCEEEECCCCHHHHCCCCCEEEECCEEECCCCCEEEEECCCCEECCCCCCCCCEEEEEC PDNPVWIHPDTAAKLGISDGDSITITSQVGEEQGTAKVTLGIRKDTVFAHMGFGSKNQEL CCCCEEECCCCCCEECCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEECCCCCCHHH TRAFGKGVHCGALLPHATAAITGSNVHTTGVTIRRV HHHHCCCCEECCCCCCCCEEEECCCEEECCEEEEEC >Mature Secondary Structure MLSRRDFLAKGSAFCAITVYAPGTLGAQSKILTPATPFIKEINSICEMCSTRCPITVESR CCCCCCHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCC LGKLFIRGNLNAKSFGGKVCARGTSGSKLLNDPHRLVKPIKRTGPRGSGQWQEIEWEEAY CCEEEEEECCCCCCCCCCEEECCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH QLIAVNLNQVRDQYGPEAIAVSSKSGSLSNHAFHFGKAIGTPNIFSHGSTCPISYAVAAK EEEEECHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH VMFGNELKLDLENSKYILNFGHNLYEGVNMSMTRGLLAAQEKGTVKVVVFEPRLSVMADK EEECCEEEEEECCCEEEEECCCHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHCC ADEWHAIKPGTDIAVVLALSHVLIEEQLYDESFVQQYVSGFEDFATSMARYSPEWASEVC CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC GISAGDIRRIARELAAAAPAAIADHGHRCTFTPEEFDLRRGIYAINVLLGNIERKGGVYF CCCHHHHHHHHHHHHHHCCHHHHCCCCEECCCCHHHHHHCCCEEEEEHHHCCCCCCCEEE AKNSKLYNKLAGEAVAPSLEKIKVEGLPTPVLPRIDLAQAQFKYAAKAGGLYQSIIPAAL EECCHHHHHHCCHHHCCCHHHEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH QQQPYAIKAWVMSRSNPVQTVTDRTQVQKALEAMDFVVACDVYISESAAYADVVLPESTY HCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEECCCCHH LERDEDISDYSAKSPAYALRQQATDTIGNTRPSWQIFKEIADAMALGQFFPWQDIADYQQ CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH RQVANNPELLPQLRKEGYLSFGIPLLMREPDMVAKFRQHYPNAQPVSERGDYGHQLQFTT HHHCCCCHHHHHHHHCCCEEECCEEEECCCHHHHHHHHHCCCCCCCHHCCCCCCEEEEEC PSGKIELSSPSLEKIAPGRSVISYRPVTLKQPGELYFIQGKSALHTNAATQNIPLLYDLQ CCCEEEECCCCHHHHCCCCCEEEECCEEECCCCCEEEEECCCCEECCCCCCCCCEEEEEC PDNPVWIHPDTAAKLGISDGDSITITSQVGEEQGTAKVTLGIRKDTVFAHMGFGSKNQEL CCCCEEECCCCCCEECCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEECCCCCCHHH TRAFGKGVHCGALLPHATAAITGSNVHTTGVTIRRV HHHHCCCCEECCCCCCCCEEEECCCEEECCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: May Bind 4Fe-4S Cluster. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7751291; 11677609; 7737516 [H]