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The map label for this gene is deoB [H]

Identifier: 157962864

GI number: 157962864

Start: 3736028

End: 3737245

Strand: Reverse

Name: deoB [H]

Synonym: Spea_3046

Alternate gene names: 157962864

Gene position: 3737245-3736028 (Counterclockwise)

Preceding gene: 157962865

Following gene: 157962863

Centisome position: 72.22

GC content: 47.04

Gene sequence:

>1218_bases
ATGAAACGTACTATAATCATGATGCTGGATTCTTTCGGCGTTGGCGCAGCGCACGATGCCGAAGCTTTCGGTGATGTGGG
TTCTAACACTTTTGGCCATATCGCAAAGGCGTGTGCTGAGGGGAAAGCAAATGATGGCCGTGAAGGCCCATTAAAGCTGC
CTAATTTGGCGCGTTTAGGTCTTGGCCATGCTTCGAAAGAAAGCACGGGTGAGTTTCCCGCAGGTTTTGGTGATGATGTC
GAAGTTATCGGTGCTTATGGCCATGCTGATGAACTAAGCTCTGGCAAAGATACACCTAGTGGGCATTGGGAAATGGCTGG
CGTACCTGTTCTTTACGAATGGGGCTACTTTAGCGAGCTAACTAACTCATTCCCACAAGCACTAACTGATAAAATTTTAG
CTCGTGCAGGCTTAACTGAGTTTCTAGGCAACTGTCACTCTTCAGGTACAGTGATTTTAGATGAGCTTGGCGAAGAGCAT
ATGCGTACTGGCAAGCCTATTTTCTATACCTCTGCTGACTCGGTATTCCAGATCGCTTGTCATGAAGAAAGTTTTGGTCT
TGAAAAATTATACGAGCTTTGCATTATTGCTCGTGAAGAGCTTGCTGATTACAATATTGGTCGTGTAATTGCTCGTCCTT
TTGTGGGCACAGGTCCAGGAAGTTTTGAGCGTACAGGTAACCGTCGTGATTATGCGGTTGAGCCGCCAGCACCAACGGTA
CTTGATAAGCTAAAAGCCGCCGGTGGTGAAGTGGTGAGTGTGGGTAAGATTGCCGACATTTACGCCCATTGTGGTATCAC
TAAGAAAGTGAAAGCGACAGGCCTAGAAGCACTGTTTGATGCAACTTTAGAGCAAGTTAAGCTTGCTGGTGATAACACTA
TTGTTTTCACAAACTTCGTTGATTTTGATTCTCATTATGGCCACCGCCGTGATGTTGCTGGTTACGCACGTAGTCTTGAG
TACTTCGACTCACGTCTACCTGAAATTCTAGCATTGCTTGATGAAGACGACTTCTTACTACTGACTGCTGACCACGGTTG
TGACCCAACTTGGCCAGGTAGCGACCATACACGTGAGCGTGTACCGGTTCTTGCTTATGGCGCAGGCCTAGAAGCTGGGT
CATTAGGGCTACGTAGCAGCTTTGCTGATATGGGGCAGTCTATCGCGAGCTACTTCAAGCTTGAGCCGATGGAATATGGC
GAATCTTTTATTCGTTAA

Upstream 100 bases:

>100_bases
GCAGTGAAAAAAGCGATTCATATTGGCGACAGCAAACCAGAGAAAACTCCGGAAATATATCGTTATATCCGCGAGTCAGA
TCTGTAACGGAGCACCGTTT

Downstream 100 bases:

>100_bases
GCTGTAAATAAATTTGAATTTGGTGGCTCAGATTGAGCCACTAGTAAACAAGACTAAGTTGATACAACGGTCTAAAAATA
TAAATAGGGGTTATTCTGAT

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MKRTIIMMLDSFGVGAAHDAEAFGDVGSNTFGHIAKACAEGKANDGREGPLKLPNLARLGLGHASKESTGEFPAGFGDDV
EVIGAYGHADELSSGKDTPSGHWEMAGVPVLYEWGYFSELTNSFPQALTDKILARAGLTEFLGNCHSSGTVILDELGEEH
MRTGKPIFYTSADSVFQIACHEESFGLEKLYELCIIAREELADYNIGRVIARPFVGTGPGSFERTGNRRDYAVEPPAPTV
LDKLKAAGGEVVSVGKIADIYAHCGITKKVKATGLEALFDATLEQVKLAGDNTIVFTNFVDFDSHYGHRRDVAGYARSLE
YFDSRLPEILALLDEDDFLLLTADHGCDPTWPGSDHTRERVPVLAYGAGLEAGSLGLRSSFADMGQSIASYFKLEPMEYG
ESFIR

Sequences:

>Translated_405_residues
MKRTIIMMLDSFGVGAAHDAEAFGDVGSNTFGHIAKACAEGKANDGREGPLKLPNLARLGLGHASKESTGEFPAGFGDDV
EVIGAYGHADELSSGKDTPSGHWEMAGVPVLYEWGYFSELTNSFPQALTDKILARAGLTEFLGNCHSSGTVILDELGEEH
MRTGKPIFYTSADSVFQIACHEESFGLEKLYELCIIAREELADYNIGRVIARPFVGTGPGSFERTGNRRDYAVEPPAPTV
LDKLKAAGGEVVSVGKIADIYAHCGITKKVKATGLEALFDATLEQVKLAGDNTIVFTNFVDFDSHYGHRRDVAGYARSLE
YFDSRLPEILALLDEDDFLLLTADHGCDPTWPGSDHTRERVPVLAYGAGLEAGSLGLRSSFADMGQSIASYFKLEPMEYG
ESFIR
>Mature_405_residues
MKRTIIMMLDSFGVGAAHDAEAFGDVGSNTFGHIAKACAEGKANDGREGPLKLPNLARLGLGHASKESTGEFPAGFGDDV
EVIGAYGHADELSSGKDTPSGHWEMAGVPVLYEWGYFSELTNSFPQALTDKILARAGLTEFLGNCHSSGTVILDELGEEH
MRTGKPIFYTSADSVFQIACHEESFGLEKLYELCIIAREELADYNIGRVIARPFVGTGPGSFERTGNRRDYAVEPPAPTV
LDKLKAAGGEVVSVGKIADIYAHCGITKKVKATGLEALFDATLEQVKLAGDNTIVFTNFVDFDSHYGHRRDVAGYARSLE
YFDSRLPEILALLDEDDFLLLTADHGCDPTWPGSDHTRERVPVLAYGAGLEAGSLGLRSSFADMGQSIASYFKLEPMEYG
ESFIR

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=406, Percent_Identity=71.4285714285714, Blast_Score=601, Evalue=1e-173,
Organism=Escherichia coli, GI1789781, Length=421, Percent_Identity=28.7410926365796, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 43796; Mature: 43796

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTIIMMLDSFGVGAAHDAEAFGDVGSNTFGHIAKACAEGKANDGREGPLKLPNLARLG
CCCEEEEEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHC
LGHASKESTGEFPAGFGDDVEVIGAYGHADELSSGKDTPSGHWEMAGVPVLYEWGYFSEL
CCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCEEECCCCEEECCCCHHHH
TNSFPQALTDKILARAGLTEFLGNCHSSGTVILDELGEEHMRTGKPIFYTSADSVFQIAC
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEESFGLEKLYELCIIAREELADYNIGRVIARPFVGTGPGSFERTGNRRDYAVEPPAPTV
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCHHH
LDKLKAAGGEVVSVGKIADIYAHCGITKKVKATGLEALFDATLEQVKLAGDNTIVFTNFV
HHHHHHCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEE
DFDSHYGHRRDVAGYARSLEYFDSRLPEILALLDEDDFLLLTADHGCDPTWPGSDHTRER
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHC
VPVLAYGAGLEAGSLGLRSSFADMGQSIASYFKLEPMEYGESFIR
CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MKRTIIMMLDSFGVGAAHDAEAFGDVGSNTFGHIAKACAEGKANDGREGPLKLPNLARLG
CCCEEEEEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHC
LGHASKESTGEFPAGFGDDVEVIGAYGHADELSSGKDTPSGHWEMAGVPVLYEWGYFSEL
CCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCEEECCCCEEECCCCHHHH
TNSFPQALTDKILARAGLTEFLGNCHSSGTVILDELGEEHMRTGKPIFYTSADSVFQIAC
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEESFGLEKLYELCIIAREELADYNIGRVIARPFVGTGPGSFERTGNRRDYAVEPPAPTV
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCHHH
LDKLKAAGGEVVSVGKIADIYAHCGITKKVKATGLEALFDATLEQVKLAGDNTIVFTNFV
HHHHHHCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEE
DFDSHYGHRRDVAGYARSLEYFDSRLPEILALLDEDDFLLLTADHGCDPTWPGSDHTRER
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHC
VPVLAYGAGLEAGSLGLRSSFADMGQSIASYFKLEPMEYGESFIR
CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA