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The map label for this gene is rhaS [C]

Identifier: 157962590

GI number: 157962590

Start: 3383175

End: 3384068

Strand: Reverse

Name: rhaS [C]

Synonym: Spea_2769

Alternate gene names: 157962590

Gene position: 3384068-3383175 (Counterclockwise)

Preceding gene: 157962591

Following gene: 157962587

Centisome position: 65.4

GC content: 40.83

Gene sequence:

>894_bases
ATGGTTTCTTTAGAGAATATTTCGATTACAGAGCATAATGATTCAGACTCTTCTGAGTCGAAAATTGATGTGGTGAAGCT
GGAGCAGATTTACACTCATCAGAATCAATATTTCGATAACCCATTTCAACCTCAATTCGCCAACTATTTTAGTTTTATCT
ATATCGAGAAGGGGCAAGGGGAGCACTTAGTAGATGGGGTACTACACCCTTATCAGAGTGGCGATGTGATCTTTATCAAT
CAGGGACAGCATCATGCATTCGATGCCGCAGATTCCCCCCAAGGAAAGATGGTCATTATTACCCCAACTTTTTTTTCAGA
GTGTTCGGCCAATATTCGTTACTCTTACTTTATTCCGTTTCACTTAAGCCTGTCATGCGCTTCGGTACTGCGGCTTGACC
CTTGTTTGAGTCAGAATTGCCATAGCATGATTAATCTTATATCAGATGCTATCGCTCAGCAGAGATCTGACTCTATTGAA
GTCAAATTATTATTTTCTGCTTTGGTGCTTAAGTTGGCTCAGTTGCGTAGCTCTAGCTCACAAAGAAATAATGCTGATGG
TGAGCATAGACGACGTTTTAGCGAGTTTCTCGGCTTGGTGGAGCAGAAATTTCACCTTGAGCGTGAGGCTAAGAGTTATG
CCGACCAAATGCATCTAAGCTACAAGGCTTTAAACCAATTATGTAAATGCTGTAGTGGGCGTACGGCTAAGCAGATTATA
GACTTCCGTTTGAATTTAGAGATTTTACGAAAACTAAGAATGCAGGGGGATTGTGTGCAATCTATCGCTTTTGAGTTAGG
TTTTGATGACATTACAAATTTTGTACGATATTTCAAGCGTCTTAATGGACAAACACCATCGTGTTATCGGTCGGCTTACA
ACGCCGTTATGTAA

Upstream 100 bases:

>100_bases
TAATGCACCGTTAAACTGTTCACTTTAGGGCACCGGACAAGGCCGGTGTCCTTGTACGTGAAAGTGGAATCCGTTACCAT
TTTAAATGGAGATAAATATA

Downstream 100 bases:

>100_bases
CCTTGTTTGAGTCGAGTGCGCCTTAAGCCTATTTAACTTATACAAGGTGAGTTAACGGTATGAGTTAAGCTTGCGTGATC
AGATGTGATTGCCGTGAGGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC-Family Transcriptional Regulator; AraC Family Transcription Regulator; Transcriptional Regulator PobR; Phosphomethylpyrimidine Kinase; Transcriptional Regulatory Protein; Regulatory Helix-Turn-Helix Protein AraC Family; AraC/XylS Family Transcription Factor; AraC-Type Transcription Regulator; Transcriptional Regulator AraC Family Protein; AraC Family Transcription Regulator Protein; Helix-Turn-Helix AraC Domain Protein

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MVSLENISITEHNDSDSSESKIDVVKLEQIYTHQNQYFDNPFQPQFANYFSFIYIEKGQGEHLVDGVLHPYQSGDVIFIN
QGQHHAFDAADSPQGKMVIITPTFFSECSANIRYSYFIPFHLSLSCASVLRLDPCLSQNCHSMINLISDAIAQQRSDSIE
VKLLFSALVLKLAQLRSSSSQRNNADGEHRRRFSEFLGLVEQKFHLEREAKSYADQMHLSYKALNQLCKCCSGRTAKQII
DFRLNLEILRKLRMQGDCVQSIAFELGFDDITNFVRYFKRLNGQTPSCYRSAYNAVM

Sequences:

>Translated_297_residues
MVSLENISITEHNDSDSSESKIDVVKLEQIYTHQNQYFDNPFQPQFANYFSFIYIEKGQGEHLVDGVLHPYQSGDVIFIN
QGQHHAFDAADSPQGKMVIITPTFFSECSANIRYSYFIPFHLSLSCASVLRLDPCLSQNCHSMINLISDAIAQQRSDSIE
VKLLFSALVLKLAQLRSSSSQRNNADGEHRRRFSEFLGLVEQKFHLEREAKSYADQMHLSYKALNQLCKCCSGRTAKQII
DFRLNLEILRKLRMQGDCVQSIAFELGFDDITNFVRYFKRLNGQTPSCYRSAYNAVM
>Mature_297_residues
MVSLENISITEHNDSDSSESKIDVVKLEQIYTHQNQYFDNPFQPQFANYFSFIYIEKGQGEHLVDGVLHPYQSGDVIFIN
QGQHHAFDAADSPQGKMVIITPTFFSECSANIRYSYFIPFHLSLSCASVLRLDPCLSQNCHSMINLISDAIAQQRSDSIE
VKLLFSALVLKLAQLRSSSSQRNNADGEHRRRFSEFLGLVEQKFHLEREAKSYADQMHLSYKALNQLCKCCSGRTAKQII
DFRLNLEILRKLRMQGDCVQSIAFELGFDDITNFVRYFKRLNGQTPSCYRSAYNAVM

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34015; Mature: 34015

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSLENISITEHNDSDSSESKIDVVKLEQIYTHQNQYFDNPFQPQFANYFSFIYIEKGQG
CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCEEEEEEECCCC
EHLVDGVLHPYQSGDVIFINQGQHHAFDAADSPQGKMVIITPTFFSECSANIRYSYFIPF
CHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHCCCCCEEEEEEEE
HLSLSCASVLRLDPCLSQNCHSMINLISDAIAQQRSDSIEVKLLFSALVLKLAQLRSSSS
EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
QRNNADGEHRRRFSEFLGLVEQKFHLEREAKSYADQMHLSYKALNQLCKCCSGRTAKQII
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DFRLNLEILRKLRMQGDCVQSIAFELGFDDITNFVRYFKRLNGQTPSCYRSAYNAVM
HHHHCHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MVSLENISITEHNDSDSSESKIDVVKLEQIYTHQNQYFDNPFQPQFANYFSFIYIEKGQG
CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCEEEEEEECCCC
EHLVDGVLHPYQSGDVIFINQGQHHAFDAADSPQGKMVIITPTFFSECSANIRYSYFIPF
CHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHCCCCCEEEEEEEE
HLSLSCASVLRLDPCLSQNCHSMINLISDAIAQQRSDSIEVKLLFSALVLKLAQLRSSSS
EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
QRNNADGEHRRRFSEFLGLVEQKFHLEREAKSYADQMHLSYKALNQLCKCCSGRTAKQII
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DFRLNLEILRKLRMQGDCVQSIAFELGFDDITNFVRYFKRLNGQTPSCYRSAYNAVM
HHHHCHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA