| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is btuB [H]
Identifier: 157962182
GI number: 157962182
Start: 2877064
End: 2879673
Strand: Reverse
Name: btuB [H]
Synonym: Spea_2361
Alternate gene names: 157962182
Gene position: 2879673-2877064 (Counterclockwise)
Preceding gene: 157962183
Following gene: 157962172
Centisome position: 55.65
GC content: 43.26
Gene sequence:
>2610_bases ATGAACAGACCATCTAAATTGGCCTCAGCGATCAAGTTCGGTTTAATCGCTTCGGTTTCTACGACAGCCTTTACCGTGTC AAATACAGCTTTCGCAGAAGAAGTCGGTGCCGATGTAGAACGCATTGCTGTTACCGGCTCCCGCATTCAGCGTACCGATA TGGAAACGGCTTCGCCAGTGACTGTTATCGACGCTAGCGCAATTAAAGCTTCTGGCGCGACTTCTATTGATGAAGTGCTA CAGAAAATGACCGCTACAGGCGGCGCCATGACAAATCCTGGCGTTAACAACGGCTCACAAGGTGGAGCTTCAATTAACTT ACGTGGTTTAGGCTCACAAAGAACACTTGTTCTAGTTAACAACCGTCGTATGGTTAACTCTGGTACTGGTGCTGCTTCTA CGGTAGATTTAAATACAATTCCAGTATCAATGATTAAGCGTGTTGAAGTACTAAAAGATGGTGCATCTTCTGTGTACGGT TCAGATGCGGTTGCTGGTGTAGTAAACATTATTTTAAAAGACGATTTTGAAGGTTTAGAGCTAAATGTTCAAAGCGGTAT CTCTGGTCAAGGTGATGCTGAAGAGACTAGCTTTGATTTAACCACTGGTGGCAACTTTGATGGCGGTAACGTTGTCATGG GTATTCAATACATGAAGCGTGGCTCAGCAAGCCAAGCCGATCGTGGTTTTTCCGAATGTCCTTTAACAGAAAGTGGCGGC GAGTTGGTTTGTGCGGGTAGTGTTTACTCAGAGAATGGTCACCTTTATGGACCAGATGGAGACTACCAAGGCAACCCTGA TGGCAGCTGGGACGAATATAATCATGTAGAAGATGCATATAACTATTCTGCGGATAGCTTCTTATACACGCCTATGGAAC GCTTAAACTTTACAGCGCTGGCGAACTTTGACTTAACTGACGATACAACTTTGTTTACTGAAACTATGTATTCAAAGCGT TGGTCAGAACAGCAAATGGCACCGCAACCTATCTATACAGAGTTTAAGTATACTGAAGCTATGGGAGATAGCTTACTAGA GCATGGCATCAATTACGGAGACGATCTTGGGTATGCTCGCCGTTTGACTGAAGTGGGACCACGTGAATTCAGCCAAGTTG TCGATACTGCGCGTGTAGTTGTTGGCCTAGAAGGTATGCTTGATAACGGTTGGACATGGGACACATCAGTGAACTACGGT CGTAATGACTCGGTTGACCGTCTTGCTAACTTGGTCAACATGGGCTCCCTAAATAAAGATATCTCAGAAGGTAACTTCAA CCCATTAGACCAAACATCATGGTCAAGTGACAATATGGACGGTTACACTTACACCGAGCAAAACACTGGTGGTAGTGAAA TGTTCATCGTATCGGGTAACCTTTCTGGTGAGGTGATGGAATTACCTGCTGGTTACTTAGGCTTTGCATCGGGTATCGAG CACCGTAAAGAGAAAGCTTGGTTCATTCCTGATTCGCTAACCGCTCAAGGTCTAGCAAACGATCCTAAAGTTGACCCAAC TGAAGGTGAGTACGATGTAAATGAAGCTTACTTAGAATTAGCGATTCCATTGCTAGCAGATCTTCCTCTTGCTCAGCAAG TTGACTTAAGTGCGGCAGTACGTTACTTCGATTACAGCACATTTGGTAGCGATAGCACTTGGAAGCTTGGTTTAACTTGG AAAATGACTGATGACTTGATGCTACGAAGTGTTGCGTCTACAGCCTTTAGAGCACCATCAGTTGATGAATTGTATTCAGG AAGCGCTACTTCATTTGATAAGATCACTCACCCTGTAACTGGTGAGAAGAGCTACCAAGCTGAAGTGACTCGTGGTGGTA ACGAAAACCTTACTCCAGAAGAAGCTGAAACCTTCACTGTAGGTTTTGTATATTCGCCTAGTTACTTAGATGGATTCTCT GTAACAGCTGATTACTACGATATTTCAATCACCAACTCAATCGCGTTAGTTGATTCAAACTACATCGCAGAGCAGTGTAT GAATAGTTCTGGTGAGCAAATCAATACAGACACCGCGCTTTGTCAATCGGCTAATATTACGTATGATCCATTGAGCGGTA AAATTAAATTTAACAATCAGCTACAAAACATTGGTGCAGAAGATACTTCAGGTATTGACGTGAACCTAGCCTATACATTT GAAGTGTTGGGCTTAGATTGGAGAACCGGTCTAGATACGACTATTCTGCTTGAGAACGTGTCTGAAATCTCTGGTCAATC TATTGATTATGCCGGCTATATCACATCGGGAATGGGTAGTTTTGCCAAGGTTAAGAGTAACTTTGACTTAGGCGTACAAG GTGCAGATTGGTCTGCTAACTATCAGGCTCGTTATATCTCAGGTATGGATAGCTATGACTGTCAAGCGGCAGATGCAAGC TGTTTAGCTCCAACAGTTGGAAGTGTTGTTTATCACGATATTTCTGGCTCATATTACTTCAATAACGGGCTTCAATTGTC ATTAGGTGTTAACAACCTATTTGATAAAGAACCTCCATATTACTCTGGTAATAATGACGCTAACACCGATCCGTACACTT ATGACACGCTTGGACGTTATTTCTACCTTCAAGCAAGTTTCAAAATCTAA
Upstream 100 bases:
>100_bases CTCGATTGACGGCATAAACGTGAAATTGCAGTATCCATACCAACGCCAAAAATAACAAATGGCGTGTATATAAAAATAAA AGGTTAGGGAGTACTACATA
Downstream 100 bases:
>100_bases ACGGTTTTAGACATAAAAAAAGCGCCTTAGGGCGCTTTTTTATTGCTTAAAAAACGGATTAACCTAAACCGTTTTCAGCC GAACTCATCTGAATAAATTC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 869; Mature: 869
Protein sequence:
>869_residues MNRPSKLASAIKFGLIASVSTTAFTVSNTAFAEEVGADVERIAVTGSRIQRTDMETASPVTVIDASAIKASGATSIDEVL QKMTATGGAMTNPGVNNGSQGGASINLRGLGSQRTLVLVNNRRMVNSGTGAASTVDLNTIPVSMIKRVEVLKDGASSVYG SDAVAGVVNIILKDDFEGLELNVQSGISGQGDAEETSFDLTTGGNFDGGNVVMGIQYMKRGSASQADRGFSECPLTESGG ELVCAGSVYSENGHLYGPDGDYQGNPDGSWDEYNHVEDAYNYSADSFLYTPMERLNFTALANFDLTDDTTLFTETMYSKR WSEQQMAPQPIYTEFKYTEAMGDSLLEHGINYGDDLGYARRLTEVGPREFSQVVDTARVVVGLEGMLDNGWTWDTSVNYG RNDSVDRLANLVNMGSLNKDISEGNFNPLDQTSWSSDNMDGYTYTEQNTGGSEMFIVSGNLSGEVMELPAGYLGFASGIE HRKEKAWFIPDSLTAQGLANDPKVDPTEGEYDVNEAYLELAIPLLADLPLAQQVDLSAAVRYFDYSTFGSDSTWKLGLTW KMTDDLMLRSVASTAFRAPSVDELYSGSATSFDKITHPVTGEKSYQAEVTRGGNENLTPEEAETFTVGFVYSPSYLDGFS VTADYYDISITNSIALVDSNYIAEQCMNSSGEQINTDTALCQSANITYDPLSGKIKFNNQLQNIGAEDTSGIDVNLAYTF EVLGLDWRTGLDTTILLENVSEISGQSIDYAGYITSGMGSFAKVKSNFDLGVQGADWSANYQARYISGMDSYDCQAADAS CLAPTVGSVVYHDISGSYYFNNGLQLSLGVNNLFDKEPPYYSGNNDANTDPYTYDTLGRYFYLQASFKI
Sequences:
>Translated_869_residues MNRPSKLASAIKFGLIASVSTTAFTVSNTAFAEEVGADVERIAVTGSRIQRTDMETASPVTVIDASAIKASGATSIDEVL QKMTATGGAMTNPGVNNGSQGGASINLRGLGSQRTLVLVNNRRMVNSGTGAASTVDLNTIPVSMIKRVEVLKDGASSVYG SDAVAGVVNIILKDDFEGLELNVQSGISGQGDAEETSFDLTTGGNFDGGNVVMGIQYMKRGSASQADRGFSECPLTESGG ELVCAGSVYSENGHLYGPDGDYQGNPDGSWDEYNHVEDAYNYSADSFLYTPMERLNFTALANFDLTDDTTLFTETMYSKR WSEQQMAPQPIYTEFKYTEAMGDSLLEHGINYGDDLGYARRLTEVGPREFSQVVDTARVVVGLEGMLDNGWTWDTSVNYG RNDSVDRLANLVNMGSLNKDISEGNFNPLDQTSWSSDNMDGYTYTEQNTGGSEMFIVSGNLSGEVMELPAGYLGFASGIE HRKEKAWFIPDSLTAQGLANDPKVDPTEGEYDVNEAYLELAIPLLADLPLAQQVDLSAAVRYFDYSTFGSDSTWKLGLTW KMTDDLMLRSVASTAFRAPSVDELYSGSATSFDKITHPVTGEKSYQAEVTRGGNENLTPEEAETFTVGFVYSPSYLDGFS VTADYYDISITNSIALVDSNYIAEQCMNSSGEQINTDTALCQSANITYDPLSGKIKFNNQLQNIGAEDTSGIDVNLAYTF EVLGLDWRTGLDTTILLENVSEISGQSIDYAGYITSGMGSFAKVKSNFDLGVQGADWSANYQARYISGMDSYDCQAADAS CLAPTVGSVVYHDISGSYYFNNGLQLSLGVNNLFDKEPPYYSGNNDANTDPYTYDTLGRYFYLQASFKI >Mature_869_residues MNRPSKLASAIKFGLIASVSTTAFTVSNTAFAEEVGADVERIAVTGSRIQRTDMETASPVTVIDASAIKASGATSIDEVL QKMTATGGAMTNPGVNNGSQGGASINLRGLGSQRTLVLVNNRRMVNSGTGAASTVDLNTIPVSMIKRVEVLKDGASSVYG SDAVAGVVNIILKDDFEGLELNVQSGISGQGDAEETSFDLTTGGNFDGGNVVMGIQYMKRGSASQADRGFSECPLTESGG ELVCAGSVYSENGHLYGPDGDYQGNPDGSWDEYNHVEDAYNYSADSFLYTPMERLNFTALANFDLTDDTTLFTETMYSKR WSEQQMAPQPIYTEFKYTEAMGDSLLEHGINYGDDLGYARRLTEVGPREFSQVVDTARVVVGLEGMLDNGWTWDTSVNYG RNDSVDRLANLVNMGSLNKDISEGNFNPLDQTSWSSDNMDGYTYTEQNTGGSEMFIVSGNLSGEVMELPAGYLGFASGIE HRKEKAWFIPDSLTAQGLANDPKVDPTEGEYDVNEAYLELAIPLLADLPLAQQVDLSAAVRYFDYSTFGSDSTWKLGLTW KMTDDLMLRSVASTAFRAPSVDELYSGSATSFDKITHPVTGEKSYQAEVTRGGNENLTPEEAETFTVGFVYSPSYLDGFS VTADYYDISITNSIALVDSNYIAEQCMNSSGEQINTDTALCQSANITYDPLSGKIKFNNQLQNIGAEDTSGIDVNLAYTF EVLGLDWRTGLDTTILLENVSEISGQSIDYAGYITSGMGSFAKVKSNFDLGVQGADWSANYQARYISGMDSYDCQAADAS CLAPTVGSVVYHDISGSYYFNNGLQLSLGVNNLFDKEPPYYSGNNDANTDPYTYDTLGRYFYLQASFKI
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=195, Percent_Identity=30.7692307692308, Blast_Score=91, Evalue=5e-19, Organism=Escherichia coli, GI1788478, Length=170, Percent_Identity=33.5294117647059, Blast_Score=80, Evalue=8e-16,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 93979; Mature: 93979
Theoretical pI: Translated: 3.97; Mature: 3.97
Prosite motif: PS00152 ATPASE_ALPHA_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRPSKLASAIKFGLIASVSTTAFTVSNTAFAEEVGADVERIAVTGSRIQRTDMETASPV CCCHHHHHHHHHHHHHEECCEEEEEECCCHHHHHHCCCCEEEEECCCHHEECCCCCCCCE TVIDASAIKASGATSIDEVLQKMTATGGAMTNPGVNNGSQGGASINLRGLGSQRTLVLVN EEEECCHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEE NRRMVNSGTGAASTVDLNTIPVSMIKRVEVLKDGASSVYGSDAVAGVVNIILKDDFEGLE CCEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHCCCCCCCEE LNVQSGISGQGDAEETSFDLTTGGNFDGGNVVMGIQYMKRGSASQADRGFSECPLTESGG EEECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEHHHHCCCCCHHHCCCCCCCCCCCCC ELVCAGSVYSENGHLYGPDGDYQGNPDGSWDEYNHVEDAYNYSADSFLYTPMERLNFTAL CEEEECCEECCCCEEECCCCCCCCCCCCCCCHHCCHHHHHCCCCCCEEECCHHHCCEEEE ANFDLTDDTTLFTETMYSKRWSEQQMAPQPIYTEFKYTEAMGDSLLEHGINYGDDLGYAR EECCCCCCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH RLTEVGPREFSQVVDTARVVVGLEGMLDNGWTWDTSVNYGRNDSVDRLANLVNMGSLNKD HHHHCCHHHHHHHHHHHHHHHEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCC ISEGNFNPLDQTSWSSDNMDGYTYTEQNTGGSEMFIVSGNLSGEVMELPAGYLGFASGIE CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEECCCCHHHHHHHHH HRKEKAWFIPDSLTAQGLANDPKVDPTEGEYDVNEAYLELAIPLLADLPLAQQVDLSAAV HHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH RYFDYSTFGSDSTWKLGLTWKMTDDLMLRSVASTAFRAPSVDELYSGSATSFDKITHPVT HHEECCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHCCCCC GEKSYQAEVTRGGNENLTPEEAETFTVGFVYSPSYLDGFSVTADYYDISITNSIALVDSN CCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEECCEEEEEECH YIAEQCMNSSGEQINTDTALCQSANITYDPLSGKIKFNNQLQNIGAEDTSGIDVNLAYTF HHHHHHHCCCCCEECCCHHHHHCCCCEECCCCCEEEECCHHHHCCCCCCCCEEEEEEEEE EVLGLDWRTGLDTTILLENVSEISGQSIDYAGYITSGMGSFAKVKSNFDLGVQGADWSAN EEEECCCCCCCCCEEEEHHHHHHCCCCEEEEEEHHCCCCCHHHHCCCCCCCCCCCCCCCC YQARYISGMDSYDCQAADASCLAPTVGSVVYHDISGSYYFNNGLQLSLGVNNLFDKEPPY CEEEEECCCCCCCCCCCCCCHHCCCCCCEEEEECCCCEEECCCEEEEECCCHHCCCCCCC YSGNNDANTDPYTYDTLGRYFYLQASFKI CCCCCCCCCCCEEHHCCCEEEEEEEEECC >Mature Secondary Structure MNRPSKLASAIKFGLIASVSTTAFTVSNTAFAEEVGADVERIAVTGSRIQRTDMETASPV CCCHHHHHHHHHHHHHEECCEEEEEECCCHHHHHHCCCCEEEEECCCHHEECCCCCCCCE TVIDASAIKASGATSIDEVLQKMTATGGAMTNPGVNNGSQGGASINLRGLGSQRTLVLVN EEEECCHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEE NRRMVNSGTGAASTVDLNTIPVSMIKRVEVLKDGASSVYGSDAVAGVVNIILKDDFEGLE CCEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHCCCCCCCEE LNVQSGISGQGDAEETSFDLTTGGNFDGGNVVMGIQYMKRGSASQADRGFSECPLTESGG EEECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEHHHHCCCCCHHHCCCCCCCCCCCCC ELVCAGSVYSENGHLYGPDGDYQGNPDGSWDEYNHVEDAYNYSADSFLYTPMERLNFTAL CEEEECCEECCCCEEECCCCCCCCCCCCCCCHHCCHHHHHCCCCCCEEECCHHHCCEEEE ANFDLTDDTTLFTETMYSKRWSEQQMAPQPIYTEFKYTEAMGDSLLEHGINYGDDLGYAR EECCCCCCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH RLTEVGPREFSQVVDTARVVVGLEGMLDNGWTWDTSVNYGRNDSVDRLANLVNMGSLNKD HHHHCCHHHHHHHHHHHHHHHEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCC ISEGNFNPLDQTSWSSDNMDGYTYTEQNTGGSEMFIVSGNLSGEVMELPAGYLGFASGIE CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEECCCCHHHHHHHHH HRKEKAWFIPDSLTAQGLANDPKVDPTEGEYDVNEAYLELAIPLLADLPLAQQVDLSAAV HHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH RYFDYSTFGSDSTWKLGLTWKMTDDLMLRSVASTAFRAPSVDELYSGSATSFDKITHPVT HHEECCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHCCCCC GEKSYQAEVTRGGNENLTPEEAETFTVGFVYSPSYLDGFSVTADYYDISITNSIALVDSN CCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEECCEEEEEECH YIAEQCMNSSGEQINTDTALCQSANITYDPLSGKIKFNNQLQNIGAEDTSGIDVNLAYTF HHHHHHHCCCCCEECCCHHHHHCCCCEECCCCCEEEECCHHHHCCCCCCCCEEEEEEEEE EVLGLDWRTGLDTTILLENVSEISGQSIDYAGYITSGMGSFAKVKSNFDLGVQGADWSAN EEEECCCCCCCCCEEEEHHHHHHCCCCEEEEEEHHCCCCCHHHHCCCCCCCCCCCCCCCC YQARYISGMDSYDCQAADASCLAPTVGSVVYHDISGSYYFNNGLQLSLGVNNLFDKEPPY CEEEEECCCCCCCCCCCCCCHHCCCCCCEEEEECCCCEEECCCEEEEECCCHHCCCCCCC YSGNNDANTDPYTYDTLGRYFYLQASFKI CCCCCCCCCCCEEHHCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA