| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is 157962133
Identifier: 157962133
GI number: 157962133
Start: 2809332
End: 2810114
Strand: Reverse
Name: 157962133
Synonym: Spea_2312
Alternate gene names: NA
Gene position: 2810114-2809332 (Counterclockwise)
Preceding gene: 157962134
Following gene: 157962132
Centisome position: 54.31
GC content: 35.38
Gene sequence:
>783_bases ATGAAGTTACAAGAAATCGTTATTAATAATTTCATGCCTTATAAAGGTGAGCAAATTGTACAGTTTCCGCAACATGAAAC ACAAAATGTTATGTTGCTTTATGGAGACAACATGCGCGGTAAAACCAGTTTTTTGAACTCTATTCGTTGGGGATTTTACG GACTGGCGGTTGGTCGTCATTTGCGTACTATTCCACGTGTAAACTTAGTTAATATTGAAGCTGCAAGTGTTGATGATTGG TCAATGTCAATTTTGCTTAAATTTACACACGAAGAAAAGAGCTATGAATTACGACGAAAAATAACCAAGAAAAGTCACGT GTCAGTGCCTTCAATCGATAATGACTTTGAAGAGGTGATTGGTTTAAAAGTTGATGGTGAAGTGATTGCTGGAGATAAAA TATTAAACCAGATTAACCAAGTTTCTCCTGAGGAGATCTCAAGATTCTTTTTATTCGACGGTGAGTTATTACAAGAGTAT GAAAACTTATTATTGGATAAAAATGCCCAGGGCGAAAAAATAAAACTGCATATTGAACAAGCTTTAGGCGTGCCTTCGTT AATTAATGGGCGTGCAGATTTCGCTGTTTTATTGCAAGAATCACGAAGAATACAAACGCGTGATGCAAATAATTCATCTG AACTAAAAAGCTTAGCAACACGCCAAAGTGATTTAGATGTTAAAGAAGATACAGCCAAAGCTGACTTGAAATCGCTAAAA GAACAGAAAAATGACGTTGAGCTTTTAGTCGATACAATTGACGAAAAATTAAAAAAACACTGA
Upstream 100 bases:
>100_bases TTCAGCAAAAGCATCAGTTTGAAAAAGAAAGAAATAGCGTTAACGAAATTAAAAAAGTAGTTGAAGCGTCAATTTCAATG CCACAAGGTGACCTATCAAT
Downstream 100 bases:
>100_bases AGCCGCGCAAAGAAGTAAAGCAGAACTAGATGTTTTAACTGCAACTAAAAAAGCAACTGAAAACAATATCATTTACGATC AAAATGAACGTCGTCAGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: ATPase Invovled In DNA Repair
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MKLQEIVINNFMPYKGEQIVQFPQHETQNVMLLYGDNMRGKTSFLNSIRWGFYGLAVGRHLRTIPRVNLVNIEAASVDDW SMSILLKFTHEEKSYELRRKITKKSHVSVPSIDNDFEEVIGLKVDGEVIAGDKILNQINQVSPEEISRFFLFDGELLQEY ENLLLDKNAQGEKIKLHIEQALGVPSLINGRADFAVLLQESRRIQTRDANNSSELKSLATRQSDLDVKEDTAKADLKSLK EQKNDVELLVDTIDEKLKKH
Sequences:
>Translated_260_residues MKLQEIVINNFMPYKGEQIVQFPQHETQNVMLLYGDNMRGKTSFLNSIRWGFYGLAVGRHLRTIPRVNLVNIEAASVDDW SMSILLKFTHEEKSYELRRKITKKSHVSVPSIDNDFEEVIGLKVDGEVIAGDKILNQINQVSPEEISRFFLFDGELLQEY ENLLLDKNAQGEKIKLHIEQALGVPSLINGRADFAVLLQESRRIQTRDANNSSELKSLATRQSDLDVKEDTAKADLKSLK EQKNDVELLVDTIDEKLKKH >Mature_260_residues MKLQEIVINNFMPYKGEQIVQFPQHETQNVMLLYGDNMRGKTSFLNSIRWGFYGLAVGRHLRTIPRVNLVNIEAASVDDW SMSILLKFTHEEKSYELRRKITKKSHVSVPSIDNDFEEVIGLKVDGEVIAGDKILNQINQVSPEEISRFFLFDGELLQEY ENLLLDKNAQGEKIKLHIEQALGVPSLINGRADFAVLLQESRRIQTRDANNSSELKSLATRQSDLDVKEDTAKADLKSLK EQKNDVELLVDTIDEKLKKH
Specific function: Unknown
COG id: COG0419
COG function: function code L; ATPase involved in DNA repair
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29765; Mature: 29765
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLQEIVINNFMPYKGEQIVQFPQHETQNVMLLYGDNMRGKTSFLNSIRWGFYGLAVGRH CCHHHHHHHCCCCCCCCHHEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH LRTIPRVNLVNIEAASVDDWSMSILLKFTHEEKSYELRRKITKKSHVSVPSIDNDFEEVI HHHCCCCEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH GLKVDGEVIAGDKILNQINQVSPEEISRFFLFDGELLQEYENLLLDKNAQGEKIKLHIEQ CCCCCCCEEEHHHHHHHHHCCCHHHHHHHHEECCHHHHHHHHHHCCCCCCCCEEEEEEHH ALGVPSLINGRADFAVLLQESRRIQTRDANNSSELKSLATRQSDLDVKEDTAKADLKSLK HCCCCHHHCCCCHHHHHHHHHCCEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH EQKNDVELLVDTIDEKLKKH HCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MKLQEIVINNFMPYKGEQIVQFPQHETQNVMLLYGDNMRGKTSFLNSIRWGFYGLAVGRH CCHHHHHHHCCCCCCCCHHEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH LRTIPRVNLVNIEAASVDDWSMSILLKFTHEEKSYELRRKITKKSHVSVPSIDNDFEEVI HHHCCCCEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH GLKVDGEVIAGDKILNQINQVSPEEISRFFLFDGELLQEYENLLLDKNAQGEKIKLHIEQ CCCCCCCEEEHHHHHHHHHCCCHHHHHHHHEECCHHHHHHHHHHCCCCCCCCEEEEEEHH ALGVPSLINGRADFAVLLQESRRIQTRDANNSSELKSLATRQSDLDVKEDTAKADLKSLK HCCCCHHHCCCCHHHHHHHHHCCEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH EQKNDVELLVDTIDEKLKKH HCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA