| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is yeiJ [C]
Identifier: 157961541
GI number: 157961541
Start: 2088632
End: 2089894
Strand: Reverse
Name: yeiJ [C]
Synonym: Spea_1717
Alternate gene names: 157961541
Gene position: 2089894-2088632 (Counterclockwise)
Preceding gene: 157961542
Following gene: 157961540
Centisome position: 40.39
GC content: 45.76
Gene sequence:
>1263_bases ATGATGTTCATGGGATTTATCGGCATGCTAGTGCTTTTAGGCATAGGCTTCGCGTGCTCAGTTAGTCGACGTTCAATTAA ACTACGTACAGTTGGTGCGGCACTAGGCTTACAAGTGTTAATTGGTGCGTTTGTACTCTATGTACCAGTTGGTCGCCAAG CACTTGAATCTATGTCTCACGGCGTGCATGTGGTGCTTGATAGCGGTAAAGCGGGTATTCGCTTCCTATTTGGCAATCTA GTTAACTTCTCGGTTGAAGGGATAGGCTTTGTATTTGCACTTAACGTGCTGCCATTAGTAGTGTTCTTCTCAGCCCTAAT TGCTGTGCTTTACTATCTTGGCATTATGCAGTTTATCATCCGTATCATTGGTGGTGGCATGGCTAAACTTCTAGGCACCT CACAGCCTGAGTCTATGTCTGCAGTGTCTAATATTTTCGTCGGTCAAAGTGAAGCACCACTCGTAATTAAGCCTTATATG GCGAAGATGAGCGACTCTGAGTTCTTCGCTGTTATGTGCGGTGGTATGGCATCCGTTTCAGGCACTGTACTTGCTGGCTA CGCCATGATGGGCGTTGATATGGAATACCTACTTGCTGCATCATTTATGGCAGCTCCTGGTGGTGTTCTGTTTGCTAAGT TAATCCTTCCTGAAACTAGCACTCCGACCTACACAATGGATAGCAAGATTCAATTTGATGAGAAGCCTCCGGTAAACGTA TTAGCGGCAGCAGGCGAAGGCGCAGCGAGTGGTCTTAAACTTGCGGCGGCTATCGGTGCGATGTTAATCGCTATGATTGG TCTGGTTACTCTGGTGAATAACCTACTAGGCGGTTTTGGTGACATGGTCGGCCTACAACTGTCTCTTGAAGGGATCTTAG GCTGGATCTTTGCACCGTTAGCCTTTTTACTAGGTGTTCCAGCTGCCGATATGGCCATTGCTGGATCTATGATTGGAAAG AAGCTTATCGTCAACGAGTTTGTTGCCTACAGTGATCTTGCTCCATACCTAAAAGACTCAACAGAAGTGACTGCAGCAGG ACTGCAAGTACTTCAAGAAAAGAGTAAAGTTATTATTAGCTTTGCACTGTGTGGCTTTGCAAACTTAGCTTCTATGGGGA TCTTAATTGGCGGACTAGGTACATTGTGTCCATCAAGAACAGACTTCATCGCCAAGTACGGCTTACGCACCGTAGTTGCT GCGACTTGCTCTAACTTAATGAGTGCTGCGATTGCAGGTATATTCTTCTCTTTAGCCAATTAA
Upstream 100 bases:
>100_bases ATGAGCAAACTCTTAAGTGTGCAAAACTGGCTGAAAGTGACTTCTTACAGCTAATCAATGCATTCGTCGATAGCGTTAAG AAAGCGTAGAGGATAGGACT
Downstream 100 bases:
>100_bases GCCATAGGCTAATGTAAGTTAAGGGCGGAATTCCGCCCTTTTTTATTGAAGGTTTAAAAATGTTTAAGTCCGCTTTGCCA CACCTACAGATGTTAATCTT
Product: nucleoside transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 420; Mature: 420
Protein sequence:
>420_residues MMFMGFIGMLVLLGIGFACSVSRRSIKLRTVGAALGLQVLIGAFVLYVPVGRQALESMSHGVHVVLDSGKAGIRFLFGNL VNFSVEGIGFVFALNVLPLVVFFSALIAVLYYLGIMQFIIRIIGGGMAKLLGTSQPESMSAVSNIFVGQSEAPLVIKPYM AKMSDSEFFAVMCGGMASVSGTVLAGYAMMGVDMEYLLAASFMAAPGGVLFAKLILPETSTPTYTMDSKIQFDEKPPVNV LAAAGEGAASGLKLAAAIGAMLIAMIGLVTLVNNLLGGFGDMVGLQLSLEGILGWIFAPLAFLLGVPAADMAIAGSMIGK KLIVNEFVAYSDLAPYLKDSTEVTAAGLQVLQEKSKVIISFALCGFANLASMGILIGGLGTLCPSRTDFIAKYGLRTVVA ATCSNLMSAAIAGIFFSLAN
Sequences:
>Translated_420_residues MMFMGFIGMLVLLGIGFACSVSRRSIKLRTVGAALGLQVLIGAFVLYVPVGRQALESMSHGVHVVLDSGKAGIRFLFGNL VNFSVEGIGFVFALNVLPLVVFFSALIAVLYYLGIMQFIIRIIGGGMAKLLGTSQPESMSAVSNIFVGQSEAPLVIKPYM AKMSDSEFFAVMCGGMASVSGTVLAGYAMMGVDMEYLLAASFMAAPGGVLFAKLILPETSTPTYTMDSKIQFDEKPPVNV LAAAGEGAASGLKLAAAIGAMLIAMIGLVTLVNNLLGGFGDMVGLQLSLEGILGWIFAPLAFLLGVPAADMAIAGSMIGK KLIVNEFVAYSDLAPYLKDSTEVTAAGLQVLQEKSKVIISFALCGFANLASMGILIGGLGTLCPSRTDFIAKYGLRTVVA ATCSNLMSAAIAGIFFSLAN >Mature_420_residues MMFMGFIGMLVLLGIGFACSVSRRSIKLRTVGAALGLQVLIGAFVLYVPVGRQALESMSHGVHVVLDSGKAGIRFLFGNL VNFSVEGIGFVFALNVLPLVVFFSALIAVLYYLGIMQFIIRIIGGGMAKLLGTSQPESMSAVSNIFVGQSEAPLVIKPYM AKMSDSEFFAVMCGGMASVSGTVLAGYAMMGVDMEYLLAASFMAAPGGVLFAKLILPETSTPTYTMDSKIQFDEKPPVNV LAAAGEGAASGLKLAAAIGAMLIAMIGLVTLVNNLLGGFGDMVGLQLSLEGILGWIFAPLAFLLGVPAADMAIAGSMIGK KLIVNEFVAYSDLAPYLKDSTEVTAAGLQVLQEKSKVIISFALCGFANLASMGILIGGLGTLCPSRTDFIAKYGLRTVVA ATCSNLMSAAIAGIFFSLAN
Specific function: Unknown
COG id: COG1972
COG function: function code F; Nucleoside permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family [H]
Homologues:
Organism=Homo sapiens, GI42542381, Length=418, Percent_Identity=37.799043062201, Blast_Score=284, Evalue=9e-77, Organism=Homo sapiens, GI227116277, Length=416, Percent_Identity=34.8557692307692, Blast_Score=270, Evalue=2e-72, Organism=Homo sapiens, GI11545853, Length=379, Percent_Identity=39.3139841688654, Blast_Score=260, Evalue=2e-69, Organism=Escherichia coli, GI1788485, Length=418, Percent_Identity=45.933014354067, Blast_Score=356, Evalue=1e-99, Organism=Escherichia coli, GI1788488, Length=418, Percent_Identity=46.88995215311, Blast_Score=346, Evalue=1e-96, Organism=Escherichia coli, GI1788737, Length=400, Percent_Identity=30.75, Blast_Score=164, Evalue=8e-42, Organism=Caenorhabditis elegans, GI17560276, Length=401, Percent_Identity=32.9177057356608, Blast_Score=201, Evalue=7e-52, Organism=Caenorhabditis elegans, GI71991794, Length=417, Percent_Identity=32.1342925659472, Blast_Score=190, Evalue=1e-48, Organism=Caenorhabditis elegans, GI25146537, Length=211, Percent_Identity=31.2796208530806, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI45552519, Length=401, Percent_Identity=37.4064837905237, Blast_Score=250, Evalue=1e-66, Organism=Drosophila melanogaster, GI45552517, Length=401, Percent_Identity=37.4064837905237, Blast_Score=250, Evalue=1e-66, Organism=Drosophila melanogaster, GI19921868, Length=401, Percent_Identity=37.4064837905237, Blast_Score=250, Evalue=1e-66, Organism=Drosophila melanogaster, GI281360430, Length=412, Percent_Identity=34.9514563106796, Blast_Score=220, Evalue=1e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008276 - InterPro: IPR018270 - InterPro: IPR011642 - InterPro: IPR011657 - InterPro: IPR002668 [H]
Pfam domain/function: PF07670 Gate; PF07662 Nucleos_tra2_C; PF01773 Nucleos_tra2_N [H]
EC number: NA
Molecular weight: Translated: 43711; Mature: 43711
Theoretical pI: Translated: 7.24; Mature: 7.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 5.7 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMFMGFIGMLVLLGIGFACSVSRRSIKLRTVGAALGLQVLIGAFVLYVPVGRQALESMSH CHHHHHHHHHHHHHCCHHEECCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC GVHVVLDSGKAGIRFLFGNLVNFSVEGIGFVFALNVLPLVVFFSALIAVLYYLGIMQFII CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RIIGGGMAKLLGTSQPESMSAVSNIFVGQSEAPLVIKPYMAKMSDSEFFAVMCGGMASVS HHHCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCHHHHCCCCCEEEEECCCHHHCC GTVLAGYAMMGVDMEYLLAASFMAAPGGVLFAKLILPETSTPTYTMDSKIQFDEKPPVNV HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEECCCEECCCCCCCEE LAAAGEGAASGLKLAAAIGAMLIAMIGLVTLVNNLLGGFGDMVGLQLSLEGILGWIFAPL EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFLLGVPAADMAIAGSMIGKKLIVNEFVAYSDLAPYLKDSTEVTAAGLQVLQEKSKVIIS HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH FALCGFANLASMGILIGGLGTLCPSRTDFIAKYGLRTVVAATCSNLMSAAIAGIFFSLAN HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MMFMGFIGMLVLLGIGFACSVSRRSIKLRTVGAALGLQVLIGAFVLYVPVGRQALESMSH CHHHHHHHHHHHHHCCHHEECCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC GVHVVLDSGKAGIRFLFGNLVNFSVEGIGFVFALNVLPLVVFFSALIAVLYYLGIMQFII CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RIIGGGMAKLLGTSQPESMSAVSNIFVGQSEAPLVIKPYMAKMSDSEFFAVMCGGMASVS HHHCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCHHHHCCCCCEEEEECCCHHHCC GTVLAGYAMMGVDMEYLLAASFMAAPGGVLFAKLILPETSTPTYTMDSKIQFDEKPPVNV HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEECCCEECCCCCCCEE LAAAGEGAASGLKLAAAIGAMLIAMIGLVTLVNNLLGGFGDMVGLQLSLEGILGWIFAPL EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFLLGVPAADMAIAGSMIGKKLIVNEFVAYSDLAPYLKDSTEVTAAGLQVLQEKSKVIIS HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH FALCGFANLASMGILIGGLGTLCPSRTDFIAKYGLRTVVAATCSNLMSAAIAGIFFSLAN HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]