| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is yecM [H]
Identifier: 157961381
GI number: 157961381
Start: 1890346
End: 1890933
Strand: Reverse
Name: yecM [H]
Synonym: Spea_1555
Alternate gene names: 157961381
Gene position: 1890933-1890346 (Counterclockwise)
Preceding gene: 157961382
Following gene: 157961374
Centisome position: 36.54
GC content: 46.26
Gene sequence:
>588_bases ATGCCCATTTTCGTTAAGGCACACCCTATGACTTACCAAGAATTAATTAGCAGCTGGCCGACATTTAGCCAGCGCATACA AGCATTTACTCAAGAGTTAGGCCTAGACTCACTCAAACTTGAATGTGACCATAGCGCACTTCGCGTTAATAGCGCTGAGG CCGCAGATGAACTGCGCCATGAGTTTGCCAAGGTCGGTAACATCATTTCAGACAATATGATAAACGGCCGCCCAATTCTA ATCATTGAGCTAAATACACCTTTAATTATGGGTGATAGTGCGATTGAATGTGTCGAGCTGCCCTACCCAAGTGACAAAGT CTATCCTGTCGAAGGTTGGGAGCATATTGAGTTGGTGCTCGACTGCGGCGCTAAAGATTGCGACACACTGAGCCAAGCGT TATTGGCTCATGCACCGCAACTTGCCGCTGTTTTATCGGGGGAAACCGAGATTAAGGTGAAAATGAGTTCACCTAAAGGT GATAAAGAGCGATTAGCGAATCCGACTATCGCCTTTAAGAGAGATGGCATTTGCGTCAAAGTTCACTCTCAGGGCATTAA AGCGGTTATCGCTTCTGAAGCGGAATAA
Upstream 100 bases:
>100_bases GAGCTTTGGCGAGCGATTGAGCCCGGCACCCCAATTGAGATCTGGCCTTAAAGAGCCAGTCACTGTTCCCATTAACAGCT ATTTTTCCACTTTTTATTCC
Downstream 100 bases:
>100_bases GACGTTGTAGATTTTAGGTTCTAGGCTGAATAAGACGTTATAGATTTTAGGCTCTAGACTCGAGTGCTAACAGCTTTTAG GTCCTAGGTCCTAGGTCCTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 195; Mature: 194
Protein sequence:
>195_residues MPIFVKAHPMTYQELISSWPTFSQRIQAFTQELGLDSLKLECDHSALRVNSAEAADELRHEFAKVGNIISDNMINGRPIL IIELNTPLIMGDSAIECVELPYPSDKVYPVEGWEHIELVLDCGAKDCDTLSQALLAHAPQLAAVLSGETEIKVKMSSPKG DKERLANPTIAFKRDGICVKVHSQGIKAVIASEAE
Sequences:
>Translated_195_residues MPIFVKAHPMTYQELISSWPTFSQRIQAFTQELGLDSLKLECDHSALRVNSAEAADELRHEFAKVGNIISDNMINGRPIL IIELNTPLIMGDSAIECVELPYPSDKVYPVEGWEHIELVLDCGAKDCDTLSQALLAHAPQLAAVLSGETEIKVKMSSPKG DKERLANPTIAFKRDGICVKVHSQGIKAVIASEAE >Mature_194_residues PIFVKAHPMTYQELISSWPTFSQRIQAFTQELGLDSLKLECDHSALRVNSAEAADELRHEFAKVGNIISDNMINGRPILI IELNTPLIMGDSAIECVELPYPSDKVYPVEGWEHIELVLDCGAKDCDTLSQALLAHAPQLAAVLSGETEIKVKMSSPKGD KERLANPTIAFKRDGICVKVHSQGIKAVIASEAE
Specific function: Unknown
COG id: COG3102
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_1582/HI_1581 [H]
Homologues:
Organism=Escherichia coli, GI87081996, Length=181, Percent_Identity=39.7790055248619, Blast_Score=130, Evalue=6e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010393 [H]
Pfam domain/function: PF06185 YecM [H]
EC number: NA
Molecular weight: Translated: 21395; Mature: 21264
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIFVKAHPMTYQELISSWPTFSQRIQAFTQELGLDSLKLECDHSALRVNSAEAADELRH CCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEECCHHHHHHHHH EFAKVGNIISDNMINGRPILIIELNTPLIMGDSAIECVELPYPSDKVYPVEGWEHIELVL HHHHHCCHHHCCCCCCCCEEEEEECCCEEECCCCEEEEECCCCCCCEEECCCCCEEEEEE DCGAKDCDTLSQALLAHAPQLAAVLSGETEIKVKMSSPKGDKERLANPTIAFKRDGICVK ECCCCCHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCHHHHHCCCCEEEECCCEEEE VHSQGIKAVIASEAE EECCCCEEEEECCCC >Mature Secondary Structure PIFVKAHPMTYQELISSWPTFSQRIQAFTQELGLDSLKLECDHSALRVNSAEAADELRH CEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEECCHHHHHHHHH EFAKVGNIISDNMINGRPILIIELNTPLIMGDSAIECVELPYPSDKVYPVEGWEHIELVL HHHHHCCHHHCCCCCCCCEEEEEECCCEEECCCCEEEEECCCCCCCEEECCCCCEEEEEE DCGAKDCDTLSQALLAHAPQLAAVLSGETEIKVKMSSPKGDKERLANPTIAFKRDGICVK ECCCCCHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCHHHHHCCCCEEEECCCEEEE VHSQGIKAVIASEAE EECCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 10493123 [H]