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The map label for this gene is ymdC [H]

Identifier: 157961288

GI number: 157961288

Start: 1783801

End: 1785345

Strand: Direct

Name: ymdC [H]

Synonym: Spea_1462

Alternate gene names: 157961288

Gene position: 1783801-1785345 (Clockwise)

Preceding gene: 157961287

Following gene: 157961289

Centisome position: 34.47

GC content: 44.14

Gene sequence:

>1545_bases
ATGAATGCAAATGGATTGCAGTCGCTTATCTTTTTAAGAAGTGTTTTTCTTTGGGCAGCTATTACTGTGCTAGTTGGCTG
CCAATCTTCTCCTGTTTACCCCGATAAACCTATTACCACTAAGCTAACCGCTCAAGCTGAGTGGCCGTTGGTTCAATATG
TTCAAGCCGATGTAGAAGCGCACCCCGAGCAAACTGGTGTGCTGCCCCTCGCCGACGGTATTGATGCCTTTATCGCACGT
CTCGCCTTAGTTAATGCCGCTACAGCCAGTATCGATCTGCAGTACTACATTTACCGTGGAGATGATACTGGTAGATTATT
AATTTGGCATTTAATAGAGGCCGCTGACCGCGGTGTCAGAGTCCGTATTCTGCTCGATGATATGGCTGTTAAAGATGCCG
ATGAAGCGCTAGTGATGCTTGCTGAGCATGACAATATTCAGGTGCGCTTATATAACCCCTCGTTCGAGAGAGATTTTCGC
AACATCGCCTTCGTTGCAGGTTTTTCCAGATTGAACCATCGCATGCACAATAAGTCGTTAACGGTAGATAACACCATTAG
CGTGGTAGGAGGGCGTAATATTGGCAATGAGTATTTTTCAAATGATACAGATGTTGAATTTGGCGATTTTGATTTAATGG
CGATAGGAGGTGCCGTCGATGAGGTGTCTCAACAGTTTGATCTGTATTGGAATGCACCATTAACAGTAGAGATTAATGCG
CTGAGCTCCCACAGTGTGACAGCAGAAGATATCGCCGATGCCTTGGAAGCTGTTGAGTCAGAAAAAGCAGATTATCAATC
TAATCCATATATAGCTCGTTTGCTAAATAGCCAATTGATAAGTCAAATGCAGAATCATTCATTGCATTGGTTCTGGGGGC
CTGCAAAGCTGGTTTATGATCTGCCGGATAAGCAAAATCATCAGTCTCAAGAAGACAATATTCTCTCTGATCTTGGGGAG
TATTTAGAGCTGGCAACAGATGAAGTACTAATTGTATCGCCTTACTTTGTACCCACTCGAATAGGTACAAAAAGTATTGT
TGAATCGGCTAAATCTGGGATTGATATTACTATATTGACTAATAGCTTAGCTGCTACCGATGTATTGGCTGTTCACGCTG
GTTACCGGCAATATCGCCAGCCGTTATTGGAGGCCGGTGTAAAGATTTATGAAGTGAAAGCTAACCCCAAGCAGAAGAAA
AACAGTAGTTGGAGCGGCAGCTCTAAGAGTAGCTTACATGCCAAAACGTTTGTCACAGATAGGTTATCAGTTTTTGTCGG
GTCCTTTAACTTCGATCCTCGGTCTGCATGGTTGAATACCGAGATGGGGTTGATCATAGATAACCAAGAGCTAGCAGCTG
GTGTGGTCGACGCGATAGAAGCAAGCTTAGCAAAAAATACCTATCGCTTAGGGATTGAGAGGGGGGAAATCGTCTGGTTC
GATGATTTTAGTCAACGAAAAGTTTACACAGAGCCTGATGCAGGCCTGTGGCGAAAGTTTCTAGTGGATTGCATCGCATT
ATTGCCGATTGAGTCCCAGCTTTAA

Upstream 100 bases:

>100_bases
TACGTGACATCGCATTTAGCGCCGAAGGTTGGGATCAATTTGCTTTTGATGTGCTTTATGCGCTACAAGAGTAATTAATA
CCCAGCAATAGAATAAAAGA

Downstream 100 bases:

>100_bases
TTGTTTGCGTATGGTGATTGAGTTAGAGTTTGCTCAAACTATTATAGATAGCGAGTGGCAGGATTTAAATGGATGCAATA
ACGGGGAAAAAAATGAAGAG

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MNANGLQSLIFLRSVFLWAAITVLVGCQSSPVYPDKPITTKLTAQAEWPLVQYVQADVEAHPEQTGVLPLADGIDAFIAR
LALVNAATASIDLQYYIYRGDDTGRLLIWHLIEAADRGVRVRILLDDMAVKDADEALVMLAEHDNIQVRLYNPSFERDFR
NIAFVAGFSRLNHRMHNKSLTVDNTISVVGGRNIGNEYFSNDTDVEFGDFDLMAIGGAVDEVSQQFDLYWNAPLTVEINA
LSSHSVTAEDIADALEAVESEKADYQSNPYIARLLNSQLISQMQNHSLHWFWGPAKLVYDLPDKQNHQSQEDNILSDLGE
YLELATDEVLIVSPYFVPTRIGTKSIVESAKSGIDITILTNSLAATDVLAVHAGYRQYRQPLLEAGVKIYEVKANPKQKK
NSSWSGSSKSSLHAKTFVTDRLSVFVGSFNFDPRSAWLNTEMGLIIDNQELAAGVVDAIEASLAKNTYRLGIERGEIVWF
DDFSQRKVYTEPDAGLWRKFLVDCIALLPIESQL

Sequences:

>Translated_514_residues
MNANGLQSLIFLRSVFLWAAITVLVGCQSSPVYPDKPITTKLTAQAEWPLVQYVQADVEAHPEQTGVLPLADGIDAFIAR
LALVNAATASIDLQYYIYRGDDTGRLLIWHLIEAADRGVRVRILLDDMAVKDADEALVMLAEHDNIQVRLYNPSFERDFR
NIAFVAGFSRLNHRMHNKSLTVDNTISVVGGRNIGNEYFSNDTDVEFGDFDLMAIGGAVDEVSQQFDLYWNAPLTVEINA
LSSHSVTAEDIADALEAVESEKADYQSNPYIARLLNSQLISQMQNHSLHWFWGPAKLVYDLPDKQNHQSQEDNILSDLGE
YLELATDEVLIVSPYFVPTRIGTKSIVESAKSGIDITILTNSLAATDVLAVHAGYRQYRQPLLEAGVKIYEVKANPKQKK
NSSWSGSSKSSLHAKTFVTDRLSVFVGSFNFDPRSAWLNTEMGLIIDNQELAAGVVDAIEASLAKNTYRLGIERGEIVWF
DDFSQRKVYTEPDAGLWRKFLVDCIALLPIESQL
>Mature_514_residues
MNANGLQSLIFLRSVFLWAAITVLVGCQSSPVYPDKPITTKLTAQAEWPLVQYVQADVEAHPEQTGVLPLADGIDAFIAR
LALVNAATASIDLQYYIYRGDDTGRLLIWHLIEAADRGVRVRILLDDMAVKDADEALVMLAEHDNIQVRLYNPSFERDFR
NIAFVAGFSRLNHRMHNKSLTVDNTISVVGGRNIGNEYFSNDTDVEFGDFDLMAIGGAVDEVSQQFDLYWNAPLTVEINA
LSSHSVTAEDIADALEAVESEKADYQSNPYIARLLNSQLISQMQNHSLHWFWGPAKLVYDLPDKQNHQSQEDNILSDLGE
YLELATDEVLIVSPYFVPTRIGTKSIVESAKSGIDITILTNSLAATDVLAVHAGYRQYRQPLLEAGVKIYEVKANPKQKK
NSSWSGSSKSSLHAKTFVTDRLSVFVGSFNFDPRSAWLNTEMGLIIDNQELAAGVVDAIEASLAKNTYRLGIERGEIVWF
DDFSQRKVYTEPDAGLWRKFLVDCIALLPIESQL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=458, Percent_Identity=39.0829694323144, Blast_Score=321, Evalue=9e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57268; Mature: 57268

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNANGLQSLIFLRSVFLWAAITVLVGCQSSPVYPDKPITTKLTAQAEWPLVQYVQADVEA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHC
HPEQTGVLPLADGIDAFIARLALVNAATASIDLQYYIYRGDDTGRLLIWHLIEAADRGVR
CCCCCCCEECCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCCHHHHHHHHHCCCEE
VRILLDDMAVKDADEALVMLAEHDNIQVRLYNPSFERDFRNIAFVAGFSRLNHRMHNKSL
EEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCE
TVDNTISVVGGRNIGNEYFSNDTDVEFGDFDLMAIGGAVDEVSQQFDLYWNAPLTVEINA
EECCEEEEECCCCCCHHHCCCCCCCEECCEEEEEECCHHHHHHHHEEEEECCCEEEEEEE
LSSHSVTAEDIADALEAVESEKADYQSNPYIARLLNSQLISQMQNHSLHWFWGPAKLVYD
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEEEE
LPDKQNHQSQEDNILSDLGEYLELATDEVLIVSPYFVPTRIGTKSIVESAKSGIDITILT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCHHHHHHHHHCCCEEEEEE
NSLAATDVLAVHAGYRQYRQPLLEAGVKIYEVKANPKQKKNSSWSGSSKSSLHAKTFVTD
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
RLSVFVGSFNFDPRSAWLNTEMGLIIDNQELAAGVVDAIEASLAKNTYRLGIERGEIVWF
EEEEEEECCCCCCCHHEECCCCEEEECCHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEE
DDFSQRKVYTEPDAGLWRKFLVDCIALLPIESQL
ECCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNANGLQSLIFLRSVFLWAAITVLVGCQSSPVYPDKPITTKLTAQAEWPLVQYVQADVEA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHC
HPEQTGVLPLADGIDAFIARLALVNAATASIDLQYYIYRGDDTGRLLIWHLIEAADRGVR
CCCCCCCEECCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCCHHHHHHHHHCCCEE
VRILLDDMAVKDADEALVMLAEHDNIQVRLYNPSFERDFRNIAFVAGFSRLNHRMHNKSL
EEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCE
TVDNTISVVGGRNIGNEYFSNDTDVEFGDFDLMAIGGAVDEVSQQFDLYWNAPLTVEINA
EECCEEEEECCCCCCHHHCCCCCCCEECCEEEEEECCHHHHHHHHEEEEECCCEEEEEEE
LSSHSVTAEDIADALEAVESEKADYQSNPYIARLLNSQLISQMQNHSLHWFWGPAKLVYD
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEEEE
LPDKQNHQSQEDNILSDLGEYLELATDEVLIVSPYFVPTRIGTKSIVESAKSGIDITILT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCHHHHHHHHHCCCEEEEEE
NSLAATDVLAVHAGYRQYRQPLLEAGVKIYEVKANPKQKKNSSWSGSSKSSLHAKTFVTD
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
RLSVFVGSFNFDPRSAWLNTEMGLIIDNQELAAGVVDAIEASLAKNTYRLGIERGEIVWF
EEEEEEECCCCCCCHHEECCCCEEEECCHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEE
DDFSQRKVYTEPDAGLWRKFLVDCIALLPIESQL
ECCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]