| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is gltX [H]
Identifier: 157961282
GI number: 157961282
Start: 1772396
End: 1773805
Strand: Direct
Name: gltX [H]
Synonym: Spea_1456
Alternate gene names: 157961282
Gene position: 1772396-1773805 (Clockwise)
Preceding gene: 157961280
Following gene: 157961284
Centisome position: 34.25
GC content: 43.48
Gene sequence:
>1410_bases ATGACAGTTAAGACGCGTTTTGCTCCAAGCCCTACCGGCTTTTTGCACGTTGGTGGTGCTCGTACAGCACTTTATTCATG GTTATATGCACGCGCAAACCAAGGTGAGTTTGTTTTACGTATCGAAGATACCGATCTTGAGCGTTCGACTCCAGAAGCAT GCGCCGCAATTTTAGAAGGCATGGAATGGCTTAACCTGAATTGGGACGAAGGTCCTTACTATCAAACCAAGCGTTTTGAT CGTTACAACGAAATCATTGCACAGATGCTAGAGCAGGGCACTGCATATAAGTGTTACTGTAGCCGTGAACGCATTGAAAC AATGCGTGAAGAGCAAGCCGCGAAAGGTGAGCAACAAAAGTATGACGGTTGCTGCCGCGATAAAGCACCGCGTGATACTG ATGAGCCATTTGTTGTGCGTTTCAAAAACCCAACAGAAGGTAGCGTTGTATTTGACGACCACGTACGTGGCCGTATTGAA TTTGCAAACAGCACATTAGATGATTTGATCATCGCACGTACTGAAGGTACGCCTACTTACAACTTCTGTGTAGTTGTAGA CGATTGGGATATGGGAATTACCTGCGTTGTTCGTGGTGAAGACCATATCAACAATACACCTCGTCAGATCAACATACTTA AAGCATTAGGTGCACCAGTACCAGAATATGCTCACGTATCGATGATCTTAGGCGATGACGGCGCTAAGCTATCTAAACGT CATGGTGCGGTAGGGGTGATGCAGTATCGTGATGACGGTTATTTACCAGAAGCGCTACTTAACTACTTAGTTCGCCTTGG CTGGTCTCATGGCGATCAAGAAGTCTTCTCTATTGATGAGATGAAGCAATTCTTCAACCTTGATGATATCAACAAGGCGG CGTCTGCTTTTAATACCGATAAACTGATTTGGTTAAACCAGCACTATATTAAAGAATCTGATCCGGAATATGTGGCTTCT CACCTTGAGTGGCACATGGCTGATCAAAATATTGATACAAGCAATGGTCCAAAACTGTCTGAAGTGGTTTCTGCATTGTC TGAACGTGCAAAGACATTAAAAGAACTTGCTGCATCTAGCCGCTACTTCTTTGAAGATTTTGCAGAGTTTGATGAAACTG CCGCTAAAAAGCATCTAAGAGGTGTTGCACTTGAGCCACTAACTTTGTTCCAGACTAAATTAGCTGGATTAAATGATTGG ACTTTAGAAGCTATTCATCAAGCAATTGAAGATACAGCAACTGAATTAGAAGTAGGAATGGGTAAAGTCGGTATGCCATT ACGCGTAGCCGTAACGGGCGCTGGTATGTCTCCTGCTGTCGATTTAACCATATTCTTGGTTGGAAAGGCCCGTACAGAGC AAAGAATCTCCAAAGCGATTGAATTTGTAGCAAATAGAATAAATTCGTAA
Upstream 100 bases:
>100_bases AGTAGATCTATTTTCCCTAGCCCTTTTGGCTGTTAGAATATGCGCCACATTCATTAGTACAGTCTATTATTTAGGCTTTC TACATAGGTCAATGTCCATT
Downstream 100 bases:
>100_bases AAAACGGGTTGACTCTTTTGGGTGCGCTGCATAGAATGCGCCACGCAGTTGAGACACAGCCAACGAATAGTTCGCGGTGC ACTCAAAAGTGATTTAGTTA
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MTVKTRFAPSPTGFLHVGGARTALYSWLYARANQGEFVLRIEDTDLERSTPEACAAILEGMEWLNLNWDEGPYYQTKRFD RYNEIIAQMLEQGTAYKCYCSRERIETMREEQAAKGEQQKYDGCCRDKAPRDTDEPFVVRFKNPTEGSVVFDDHVRGRIE FANSTLDDLIIARTEGTPTYNFCVVVDDWDMGITCVVRGEDHINNTPRQINILKALGAPVPEYAHVSMILGDDGAKLSKR HGAVGVMQYRDDGYLPEALLNYLVRLGWSHGDQEVFSIDEMKQFFNLDDINKAASAFNTDKLIWLNQHYIKESDPEYVAS HLEWHMADQNIDTSNGPKLSEVVSALSERAKTLKELAASSRYFFEDFAEFDETAAKKHLRGVALEPLTLFQTKLAGLNDW TLEAIHQAIEDTATELEVGMGKVGMPLRVAVTGAGMSPAVDLTIFLVGKARTEQRISKAIEFVANRINS
Sequences:
>Translated_469_residues MTVKTRFAPSPTGFLHVGGARTALYSWLYARANQGEFVLRIEDTDLERSTPEACAAILEGMEWLNLNWDEGPYYQTKRFD RYNEIIAQMLEQGTAYKCYCSRERIETMREEQAAKGEQQKYDGCCRDKAPRDTDEPFVVRFKNPTEGSVVFDDHVRGRIE FANSTLDDLIIARTEGTPTYNFCVVVDDWDMGITCVVRGEDHINNTPRQINILKALGAPVPEYAHVSMILGDDGAKLSKR HGAVGVMQYRDDGYLPEALLNYLVRLGWSHGDQEVFSIDEMKQFFNLDDINKAASAFNTDKLIWLNQHYIKESDPEYVAS HLEWHMADQNIDTSNGPKLSEVVSALSERAKTLKELAASSRYFFEDFAEFDETAAKKHLRGVALEPLTLFQTKLAGLNDW TLEAIHQAIEDTATELEVGMGKVGMPLRVAVTGAGMSPAVDLTIFLVGKARTEQRISKAIEFVANRINS >Mature_468_residues TVKTRFAPSPTGFLHVGGARTALYSWLYARANQGEFVLRIEDTDLERSTPEACAAILEGMEWLNLNWDEGPYYQTKRFDR YNEIIAQMLEQGTAYKCYCSRERIETMREEQAAKGEQQKYDGCCRDKAPRDTDEPFVVRFKNPTEGSVVFDDHVRGRIEF ANSTLDDLIIARTEGTPTYNFCVVVDDWDMGITCVVRGEDHINNTPRQINILKALGAPVPEYAHVSMILGDDGAKLSKRH GAVGVMQYRDDGYLPEALLNYLVRLGWSHGDQEVFSIDEMKQFFNLDDINKAASAFNTDKLIWLNQHYIKESDPEYVASH LEWHMADQNIDTSNGPKLSEVVSALSERAKTLKELAASSRYFFEDFAEFDETAAKKHLRGVALEPLTLFQTKLAGLNDWT LEAIHQAIEDTATELEVGMGKVGMPLRVAVTGAGMSPAVDLTIFLVGKARTEQRISKAIEFVANRINS
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=500, Percent_Identity=30, Blast_Score=216, Evalue=3e-56, Organism=Homo sapiens, GI62241042, Length=393, Percent_Identity=21.882951653944, Blast_Score=69, Evalue=7e-12, Organism=Escherichia coli, GI1788743, Length=469, Percent_Identity=72.2814498933902, Blast_Score=728, Evalue=0.0, Organism=Escherichia coli, GI226510925, Length=240, Percent_Identity=40.8333333333333, Blast_Score=164, Evalue=2e-41, Organism=Escherichia coli, GI1786895, Length=227, Percent_Identity=25.9911894273128, Blast_Score=69, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71993394, Length=483, Percent_Identity=29.8136645962733, Blast_Score=201, Evalue=8e-52, Organism=Caenorhabditis elegans, GI17511007, Length=382, Percent_Identity=24.0837696335079, Blast_Score=71, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6324540, Length=490, Percent_Identity=30.6122448979592, Blast_Score=248, Evalue=2e-66, Organism=Saccharomyces cerevisiae, GI6321192, Length=231, Percent_Identity=30.3030303030303, Blast_Score=94, Evalue=7e-20, Organism=Saccharomyces cerevisiae, GI6324742, Length=131, Percent_Identity=30.5343511450382, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24665321, Length=503, Percent_Identity=30.4174950298211, Blast_Score=240, Evalue=2e-63,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 52852; Mature: 52721
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVKTRFAPSPTGFLHVGGARTALYSWLYARANQGEFVLRIEDTDLERSTPEACAAILEG CCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHCC MEWLNLNWDEGPYYQTKRFDRYNEIIAQMLEQGTAYKCYCSRERIETMREEQAAKGEQQK HHEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCCHHH YDGCCRDKAPRDTDEPFVVRFKNPTEGSVVFDDHVRGRIEFANSTLDDLIIARTEGTPTY HCCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCEEEECCCCCCCEEEEECCCCCCE NFCVVVDDWDMGITCVVRGEDHINNTPRQINILKALGAPVPEYAHVSMILGDDGAKLSKR EEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHH HGAVGVMQYRDDGYLPEALLNYLVRLGWSHGDQEVFSIDEMKQFFNLDDINKAASAFNTD CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCC KLIWLNQHYIKESDPEYVASHLEWHMADQNIDTSNGPKLSEVVSALSERAKTLKELAASS EEEEECHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC RYFFEDFAEFDETAAKKHLRGVALEPLTLFQTKLAGLNDWTLEAIHQAIEDTATELEVGM HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC GKVGMPLRVAVTGAGMSPAVDLTIFLVGKARTEQRISKAIEFVANRINS CCCCCCEEEEEECCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TVKTRFAPSPTGFLHVGGARTALYSWLYARANQGEFVLRIEDTDLERSTPEACAAILEG CCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHCC MEWLNLNWDEGPYYQTKRFDRYNEIIAQMLEQGTAYKCYCSRERIETMREEQAAKGEQQK HHEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCCHHH YDGCCRDKAPRDTDEPFVVRFKNPTEGSVVFDDHVRGRIEFANSTLDDLIIARTEGTPTY HCCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCEEEECCCCCCCEEEEECCCCCCE NFCVVVDDWDMGITCVVRGEDHINNTPRQINILKALGAPVPEYAHVSMILGDDGAKLSKR EEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHH HGAVGVMQYRDDGYLPEALLNYLVRLGWSHGDQEVFSIDEMKQFFNLDDINKAASAFNTD CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCC KLIWLNQHYIKESDPEYVASHLEWHMADQNIDTSNGPKLSEVVSALSERAKTLKELAASS EEEEECHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC RYFFEDFAEFDETAAKKHLRGVALEPLTLFQTKLAGLNDWTLEAIHQAIEDTATELEVGM HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC GKVGMPLRVAVTGAGMSPAVDLTIFLVGKARTEQRISKAIEFVANRINS CCCCCCEEEEEECCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA