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The map label for this gene is capD [H]

Identifier: 157961242

GI number: 157961242

Start: 1718393

End: 1720336

Strand: Direct

Name: capD [H]

Synonym: Spea_1416

Alternate gene names: 157961242

Gene position: 1718393-1720336 (Clockwise)

Preceding gene: 157961241

Following gene: 157961244

Centisome position: 33.21

GC content: 44.44

Gene sequence:

>1944_bases
ATGGACTTTTTGCAGTGCTTGTTTTCATTAAAACGAGTGGAAAAACGAATAGTTAGCGTATTAATTGACTCGTTATTTTT
ATTGATAGCGTTTTGGGGAGCAGTTCTTGTCCGTGTTGATGATATCAGTACGCTGACGAATGGCTCATATTGGTTACTTA
TTGCAAGTGTGGTGCCGCTTAGTATTCTAGGTTTTGCAAAACTGGGGCTATATCGTGCTGTGTTGCGTTATATGGGGTTG
CAAGCACTGAGCGCTATTTTATTGGGCGTAGTCGTATCTACGGTCAGTTTAGTATTGGCCGCTTATTATTTCGATTCACA
ACTTCCTAGAACCGTACCGGTTATTTACTCTGCATTTGCACTGGTTTTTATTGGTGGCACGCGTACGATGGTGCGCGCTT
TTGTTGGCACGGGAATGAAGCGCATCGGTGAGCCAGTGATTATATATGGTGCAGGAGTGAGTGGTCGCCAACTGGTAACG
GCGTTAGTACAAAGCCACGAATATTATCCGTTTGCCTTTGTCGACGACGATAAGTCATTGCATGGCACTGTCATTCAAGG
TGTACACGTGCATTCACCATCGATTATGCGTAAGCTCATAAGAGAAAAGCAGGCGACCAAGGTGCTGCTAGCACTGCCTA
GCGCGTCGCGTTCGCGCCGCAAAGAGATTTTATTATCATTAGAACAACTCGCTGTGCAGGTACTCACCTTACCGGCCATG
GCCGATCTAGTTAGTGGTAATAAGCTTTATAGTGATATTAAAGAAGTCGAGATTGATGATCTTCTCGGTCGCGACAGTGT
TAGACCTCGTGATGATTTAATGACTGCTAATATCAAAAATAAAGTGGTGATGGTGACAGGCGCGGGTGGGTCTATAGGTT
CGGAGTTATGTCGACAGATTATTAAGCAATCGCCAAGGAAACTGGTGTTATTTGAGCTGTCTGAGTTTGGATTATATTCA
ATAGAGCGTGAGCTATCAGCTTTGGCTTCAGGGCTTGGGCTAGATGTTGAAATCTACCCAATGTTGGGTTCTGTACAGAG
AAAGAACCGTATAAAGGCTGTTATGGAAGCGTTTGAGGTGCAAACTGTTTACCATGCGGCTGCTTATAAACACGTGCCGT
TAGTTGAACATAACGTAGTAGAAGGTGTGCGTAACAATGTGTTTGGTACGCTTTATACCGCACAAGCTGCAATAGCGGCA
AAAGTGGAAACATTTGTACTTATTTCTACTGATAAAGCCGTTCGCCCAACCAATGTAATGGGCACGACTAAACGCCTAGC
AGAGCTCGCGTTGCAAGCATTAGCGAACGAATCGCATTCAACACGTTTTTGTATGGTGCGTTTTGGTAATGTGCTTGGCT
CATCGGGTTCTGTAGTGCCATTGTTTAGAAAGCAGATTGCAGCTGGCGGTCCTGTTACGGTAACGCATCCTGAGATCACC
CGCTTTTTCATGACGATCCCGGAAGCGTCTCAATTGGTGATTCAAGCTGGAGCGATGGGCAAAGGCGGAGATGTGTTTGT
TTTGGACATGGGCAGTTCAGTTAAAATTGTCGATCTTGCCGCAAAAATGATCCGTTTAAGTGGCTTTGATGTTAAGGATG
ATATTAATCCTGAAGGTGATATTAGCATCGAATATAGTGGCCTTCGTCCAGGCGAAAAGCTTTATGAAGAGCTGTTAATT
GGCGATGACGTGACCGGTACGAATCACGAACGCATTATGACTGCCAATGAATTATGTTTACCTTGGCATGAGCTTGAAGT
TATCCTTAAGCGACTCGATGCAGCTTGTCATGAGTTCCAGCATGAAGCGATCAGGGAGATCTTACTGAGTGCTCCTACCG
GTTTTAATCCTACTGATGGCATATGTGATTTAGTGTGGCAACAACGTGAAAGTGAGCCTCAGCAGAGTATTAAAGAGGAA
AATGTGCTTTCTATTGTTTCTTAA

Upstream 100 bases:

>100_bases
TCTCCATCGATATATGTTATTCTCTTTCGCGTTATATAATCATTTTTTAGTCTTGTAGTAGTCATATCATATGAAGCCTT
CTTGCCAAATGGAGCAAAAA

Downstream 100 bases:

>100_bases
ATCAATTGATATATTCTGACAAAGCCAGCTCATACAGCTGGCTTTGTTGTTTTTAGGCGAAATTATTTGATCGTTGAGGC
CTACTTATGGATGCTTTGTT

Product: polysaccharide biosynthesis protein CapD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 647; Mature: 647

Protein sequence:

>647_residues
MDFLQCLFSLKRVEKRIVSVLIDSLFLLIAFWGAVLVRVDDISTLTNGSYWLLIASVVPLSILGFAKLGLYRAVLRYMGL
QALSAILLGVVVSTVSLVLAAYYFDSQLPRTVPVIYSAFALVFIGGTRTMVRAFVGTGMKRIGEPVIIYGAGVSGRQLVT
ALVQSHEYYPFAFVDDDKSLHGTVIQGVHVHSPSIMRKLIREKQATKVLLALPSASRSRRKEILLSLEQLAVQVLTLPAM
ADLVSGNKLYSDIKEVEIDDLLGRDSVRPRDDLMTANIKNKVVMVTGAGGSIGSELCRQIIKQSPRKLVLFELSEFGLYS
IERELSALASGLGLDVEIYPMLGSVQRKNRIKAVMEAFEVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIAA
KVETFVLISTDKAVRPTNVMGTTKRLAELALQALANESHSTRFCMVRFGNVLGSSGSVVPLFRKQIAAGGPVTVTHPEIT
RFFMTIPEASQLVIQAGAMGKGGDVFVLDMGSSVKIVDLAAKMIRLSGFDVKDDINPEGDISIEYSGLRPGEKLYEELLI
GDDVTGTNHERIMTANELCLPWHELEVILKRLDAACHEFQHEAIREILLSAPTGFNPTDGICDLVWQQRESEPQQSIKEE
NVLSIVS

Sequences:

>Translated_647_residues
MDFLQCLFSLKRVEKRIVSVLIDSLFLLIAFWGAVLVRVDDISTLTNGSYWLLIASVVPLSILGFAKLGLYRAVLRYMGL
QALSAILLGVVVSTVSLVLAAYYFDSQLPRTVPVIYSAFALVFIGGTRTMVRAFVGTGMKRIGEPVIIYGAGVSGRQLVT
ALVQSHEYYPFAFVDDDKSLHGTVIQGVHVHSPSIMRKLIREKQATKVLLALPSASRSRRKEILLSLEQLAVQVLTLPAM
ADLVSGNKLYSDIKEVEIDDLLGRDSVRPRDDLMTANIKNKVVMVTGAGGSIGSELCRQIIKQSPRKLVLFELSEFGLYS
IERELSALASGLGLDVEIYPMLGSVQRKNRIKAVMEAFEVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIAA
KVETFVLISTDKAVRPTNVMGTTKRLAELALQALANESHSTRFCMVRFGNVLGSSGSVVPLFRKQIAAGGPVTVTHPEIT
RFFMTIPEASQLVIQAGAMGKGGDVFVLDMGSSVKIVDLAAKMIRLSGFDVKDDINPEGDISIEYSGLRPGEKLYEELLI
GDDVTGTNHERIMTANELCLPWHELEVILKRLDAACHEFQHEAIREILLSAPTGFNPTDGICDLVWQQRESEPQQSIKEE
NVLSIVS
>Mature_647_residues
MDFLQCLFSLKRVEKRIVSVLIDSLFLLIAFWGAVLVRVDDISTLTNGSYWLLIASVVPLSILGFAKLGLYRAVLRYMGL
QALSAILLGVVVSTVSLVLAAYYFDSQLPRTVPVIYSAFALVFIGGTRTMVRAFVGTGMKRIGEPVIIYGAGVSGRQLVT
ALVQSHEYYPFAFVDDDKSLHGTVIQGVHVHSPSIMRKLIREKQATKVLLALPSASRSRRKEILLSLEQLAVQVLTLPAM
ADLVSGNKLYSDIKEVEIDDLLGRDSVRPRDDLMTANIKNKVVMVTGAGGSIGSELCRQIIKQSPRKLVLFELSEFGLYS
IERELSALASGLGLDVEIYPMLGSVQRKNRIKAVMEAFEVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIAA
KVETFVLISTDKAVRPTNVMGTTKRLAELALQALANESHSTRFCMVRFGNVLGSSGSVVPLFRKQIAAGGPVTVTHPEIT
RFFMTIPEASQLVIQAGAMGKGGDVFVLDMGSSVKIVDLAAKMIRLSGFDVKDDINPEGDISIEYSGLRPGEKLYEELLI
GDDVTGTNHERIMTANELCLPWHELEVILKRLDAACHEFQHEAIREILLSAPTGFNPTDGICDLVWQQRESEPQQSIKEE
NVLSIVS

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869 [H]

Pfam domain/function: PF02719 Polysacc_synt_2 [H]

EC number: NA

Molecular weight: Translated: 70993; Mature: 70993

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFLQCLFSLKRVEKRIVSVLIDSLFLLIAFWGAVLVRVDDISTLTNGSYWLLIASVVPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHCCCCCEEHHHHHHHH
SILGFAKLGLYRAVLRYMGLQALSAILLGVVVSTVSLVLAAYYFDSQLPRTVPVIYSAFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LVFIGGTRTMVRAFVGTGMKRIGEPVIIYGAGVSGRQLVTALVQSHEYYPFAFVDDDKSL
HHHCCCHHHHHHHHHHCCHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCC
HGTVIQGVHVHSPSIMRKLIREKQATKVLLALPSASRSRRKEILLSLEQLAVQVLTLPAM
CCHHEECEEECCHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ADLVSGNKLYSDIKEVEIDDLLGRDSVRPRDDLMTANIKNKVVMVTGAGGSIGSELCRQI
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHH
IKQSPRKLVLFELSEFGLYSIERELSALASGLGLDVEIYPMLGSVQRKNRIKAVMEAFEV
HHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
QTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIAAKVETFVLISTDKAVRPTNVM
HHHHHHHHHCCCCCHHHHHHHHHHHCCCEEHHHHHHHHHHEEEEEEEEECCCCCCCCCCC
GTTKRLAELALQALANESHSTRFCMVRFGNVLGSSGSVVPLFRKQIAAGGPVTVTHPEIT
HHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHCCCCCEEEECHHHH
RFFMTIPEASQLVIQAGAMGKGGDVFVLDMGSSVKIVDLAAKMIRLSGFDVKDDINPEGD
HHHHCCCCHHHHHEEECCCCCCCCEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCCCCCC
ISIEYSGLRPGEKLYEELLIGDDVTGTNHERIMTANELCLPWHELEVILKRLDAACHEFQ
EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
HEAIREILLSAPTGFNPTDGICDLVWQQRESEPQQSIKEENVLSIVS
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCHHHHCC
>Mature Secondary Structure
MDFLQCLFSLKRVEKRIVSVLIDSLFLLIAFWGAVLVRVDDISTLTNGSYWLLIASVVPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHCCCCCEEHHHHHHHH
SILGFAKLGLYRAVLRYMGLQALSAILLGVVVSTVSLVLAAYYFDSQLPRTVPVIYSAFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LVFIGGTRTMVRAFVGTGMKRIGEPVIIYGAGVSGRQLVTALVQSHEYYPFAFVDDDKSL
HHHCCCHHHHHHHHHHCCHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCC
HGTVIQGVHVHSPSIMRKLIREKQATKVLLALPSASRSRRKEILLSLEQLAVQVLTLPAM
CCHHEECEEECCHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ADLVSGNKLYSDIKEVEIDDLLGRDSVRPRDDLMTANIKNKVVMVTGAGGSIGSELCRQI
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHEEECCCCCEEEEECCCCCHHHHHHHHH
IKQSPRKLVLFELSEFGLYSIERELSALASGLGLDVEIYPMLGSVQRKNRIKAVMEAFEV
HHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
QTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIAAKVETFVLISTDKAVRPTNVM
HHHHHHHHHCCCCCHHHHHHHHHHHCCCEEHHHHHHHHHHEEEEEEEEECCCCCCCCCCC
GTTKRLAELALQALANESHSTRFCMVRFGNVLGSSGSVVPLFRKQIAAGGPVTVTHPEIT
HHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHCCCCCEEEECHHHH
RFFMTIPEASQLVIQAGAMGKGGDVFVLDMGSSVKIVDLAAKMIRLSGFDVKDDINPEGD
HHHHCCCCHHHHHEEECCCCCCCCEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCCCCCC
ISIEYSGLRPGEKLYEELLIGDDVTGTNHERIMTANELCLPWHELEVILKRLDAACHEFQ
EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
HEAIREILLSAPTGFNPTDGICDLVWQQRESEPQQSIKEENVLSIVS
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]