| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157960904
Identifier: 157960904
GI number: 157960904
Start: 1301193
End: 1303559
Strand: Reverse
Name: 157960904
Synonym: Spea_1076
Alternate gene names: NA
Gene position: 1303559-1301193 (Counterclockwise)
Preceding gene: 157960908
Following gene: 157960903
Centisome position: 25.19
GC content: 46.68
Gene sequence:
>2367_bases ATGGCACATCAGCAAGAAATTGTCGCACTAAAGAAATTTGTTCGAGCAACTAACTTTCTAGCGACATCACAAATTTACTT AAAGAAAAACGTGCTGCATAAACGCGCACTCGAACATAGCGATATCAAGCCAAGGCTACTCGGCCACTGGGGAACCTGTC CGGGGATCAACTTTGTTTATGCTAACGTCAACAGACTTATCAGCAAACACAAACGCTCCTTCGTTTACTTGGTCGGTCCT GGTCACGGCTTCCCAGCCGTTCAAGCAAACTTATTTATGGAAGGCTCCTTAAGCCATTTCTACCCAGACACCATTCCATA TAACGAAGACGGTATTACCGATATTTGCCAGAAATTCTCAGCAGCCTATGGCTACCCTTCCCATGCAAACCCTGAAGCGC CAGGCCAAATCCTAGAAGGCGGCGAATTAGGCTATTCACTGTCTGTTGCTTGGGGCGCCGTGTTAGATAATCCAGATCTG ATTGCAGCGTGTCTAATTGGTGATGGGGAATCTGAAACTGGGCCACTAGCCGCATCTTGGTACGCTAACCGCCTTGTTTC ACCAAAGAACAATGGTGCTGTGCTGCCTATCGTTCATATTAACGGCTACAAGATCTCTGGCCCAACTCGTATGGGGCGTA TGAGCCATGAAGAGCTCGACCTTGAGTTTAGAGGCTTAGGCTATCAGCCAATCATTGTTGATGACCAGCTAGAAGAAGAC GTTTACCTTCAAATGGCTGCGGCAATGGATAAGTCATATGAAATGATCAATGACATCCAGACCCGAGCTCGCGCTGGCGA AGACATTGTAAAGCCGCGCTGGCCAGTGATCTTGATGCGTACGGCAAAAGGCTGGACGGGTACAGCTGAGTTTAATGGTA AGAAGTTAGAGGGTAACTGCGAATCCCACCAAGTTATCGTTAATAAGTGTGCTAGCGACAAGGGGCATCTAGATGCCCTC AATACATGGCTAGCCAGCTACAAGTTCAGCGAGTTATATAGCATCAGCGACAAAGGCGAGCTTATCTTCGACCAAGACAT TCAGTCTCTGCTACCGCCTAAAGAACTGTCTTGTGGTCGACAACATTTAAGCTACGGCGGTGAAGTGGTTCGAGCATTGG CACAACCCGATCTTGAAAAGCTTGCCTACGGCCCGGAAACTCCACGCGGTCATCGCGGCTTATCTATGTATAAGATGGGT GAATGGATGCGTGATGCCTTTAAGCTCAATCGCGACCAACGCAATCTACGTATTTTCTGCCCGGATGAAACCTATTCAAA CCAGCTACAAGCAGTGTTTGAAGAAACGAGTCGTGCATGGCAGTGGCCTATAGAAAGCTGGGATGAAGACATGTCCCGTG ATGGCCGAGTCATTGAGCTACTTTCAGAAAACCTATTGTTCGGTATGCTACATGGTTATACCGTAACGGGTCGCCATGCG ATGTTCCCAACTTATGAGGCTTTCTCGCAGGTTGTATCATCGATGGCAGATCAATACTGTAAATACGTATACGCAAGCCA AGGTGTGCACTTCCGTAAGCCTGTACCTGCTTGTAACGTAGTATTGTCATCACTACTTGAGCGTCAAGATCACAATGGTT ACTCACATCAAAATCCATCTTTCCTAGGTGCTATGCTCGAGAAACATCCTAAGATCATTTCGGCTTATCTACCCGCAGAT GGTAACAGTACACTGGTTTACACCGAACGCGCCTATGCCGATCGAGACAAGTTAAACATCTTAGTTGCAGGTAAGAAAGA TCTGCCACAATGGCTCACGCTCAATGAAGCCCGCCAACAAGCTAAAGACGGTGTCATGGTTTGGGACTTTGCCTCAGATG AAAGTCCTGATGTAGTTCTTGTTGGTTGTGGGGACTACGTCACCCAAGAAGCAATGGCCTCACTGGTACTTATCCGCGAG CTCTTACCACGTGTACGTATTCGTTTCGTGAGTGTTACCGAGCTTACAAGTAGTGGCCTAGGTAGCTTAGAGTTCCAAAG TAAGCCTTGGTTGATGGATGAAATATTTACCACCGATAAAGGCGTGGTATTTAACTATCACGGTTATCCAAACACCATTA AGAAACTGGTATTTGACTATAAAGGCAGTAAGCGTTTCAGAATCAAAGGCTATGAAGAGGAAGGTTCAACTACAACACCA TTTGATATGGGCGTGCGTAACGGTACTTCACGTTACCACTTGGTTATAGACATGGCGTATAAACTATTCCAGCAAAGCGT TATTGATGAAACCCAGCATGTAGCAATCACCACTGATATGCTGCAGCGCTTAGTCGACCACAGGAATTATATCAAGGCTA ACGGGGTTGACCCAGAAAGCATTGAAAACTGGGTTTGGACTCGGTAA
Upstream 100 bases:
>100_bases CAAAAAATCGGAGCTAGGCCACATTCTCGTAATAAAATTACAAATATAGTGACCAATATGAAATTTGTTTAACTTTATGA TTACGTAAATGGAGATATTT
Downstream 100 bases:
>100_bases CAGCCTCATCTGAGAGCTAATTTCACTGCAAATTTAAGGGCGCTTTTTAAAGCGCCCTTTTTTTGCAACCTAATTTACCC GTATAATTTAACAATTGAAG
Product: putative phosphoketolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 787
Protein sequence:
>788_residues MAHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVYANVNRLISKHKRSFVYLVGP GHGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFSAAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDL IAACLIGDGESETGPLAASWYANRLVSPKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYQPIIVDDQLEED VYLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFNGKKLEGNCESHQVIVNKCASDKGHLDAL NTWLASYKFSELYSISDKGELIFDQDIQSLLPPKELSCGRQHLSYGGEVVRALAQPDLEKLAYGPETPRGHRGLSMYKMG EWMRDAFKLNRDQRNLRIFCPDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHA MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPKIISAYLPAD GNSTLVYTERAYADRDKLNILVAGKKDLPQWLTLNEARQQAKDGVMVWDFASDESPDVVLVGCGDYVTQEAMASLVLIRE LLPRVRIRFVSVTELTSSGLGSLEFQSKPWLMDEIFTTDKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTP FDMGVRNGTSRYHLVIDMAYKLFQQSVIDETQHVAITTDMLQRLVDHRNYIKANGVDPESIENWVWTR
Sequences:
>Translated_788_residues MAHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVYANVNRLISKHKRSFVYLVGP GHGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFSAAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDL IAACLIGDGESETGPLAASWYANRLVSPKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYQPIIVDDQLEED VYLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFNGKKLEGNCESHQVIVNKCASDKGHLDAL NTWLASYKFSELYSISDKGELIFDQDIQSLLPPKELSCGRQHLSYGGEVVRALAQPDLEKLAYGPETPRGHRGLSMYKMG EWMRDAFKLNRDQRNLRIFCPDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHA MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPKIISAYLPAD GNSTLVYTERAYADRDKLNILVAGKKDLPQWLTLNEARQQAKDGVMVWDFASDESPDVVLVGCGDYVTQEAMASLVLIRE LLPRVRIRFVSVTELTSSGLGSLEFQSKPWLMDEIFTTDKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTP FDMGVRNGTSRYHLVIDMAYKLFQQSVIDETQHVAITTDMLQRLVDHRNYIKANGVDPESIENWVWTR >Mature_787_residues AHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVYANVNRLISKHKRSFVYLVGPG HGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFSAAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDLI AACLIGDGESETGPLAASWYANRLVSPKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYQPIIVDDQLEEDV YLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFNGKKLEGNCESHQVIVNKCASDKGHLDALN TWLASYKFSELYSISDKGELIFDQDIQSLLPPKELSCGRQHLSYGGEVVRALAQPDLEKLAYGPETPRGHRGLSMYKMGE WMRDAFKLNRDQRNLRIFCPDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHAM FPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPKIISAYLPADG NSTLVYTERAYADRDKLNILVAGKKDLPQWLTLNEARQQAKDGVMVWDFASDESPDVVLVGCGDYVTQEAMASLVLIREL LPRVRIRFVSVTELTSSGLGSLEFQSKPWLMDEIFTTDKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTPF DMGVRNGTSRYHLVIDMAYKLFQQSVIDETQHVAITTDMLQRLVDHRNYIKANGVDPESIENWVWTR
Specific function: Unknown
COG id: COG3957
COG function: function code G; Phosphoketolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the XFP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR005593 - InterPro: IPR018969 - InterPro: IPR019790 - InterPro: IPR018970 - InterPro: IPR019789 [H]
Pfam domain/function: PF03894 XFP; PF09363 XFP_C; PF09364 XFP_N [H]
EC number: NA
Molecular weight: Translated: 88944; Mature: 88813
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: PS60002 PHOSPHOKETOLASE_1 ; PS60003 PHOSPHOKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCEEEE ANVNRLISKHKRSFVYLVGPGHGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFS HHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHH AAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDLIAACLIGDGESETGPLAASW HHCCCCCCCCCCCCCHHCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEHHH YANRLVSPKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYQPIIVDDQLEED HHHHCCCCCCCCCEEEEEEECCEEECCCCHHCCCCCHHCCEEEECCCCCEEEECCCCCHH VYLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFNGKKLEGNC HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEECCCC ESHQVIVNKCASDKGHLDALNTWLASYKFSELYSISDKGELIFDQDIQSLLPPKELSCGR CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCCCEEECCCHHHHCCCHHHHHHH QHLSYGGEVVRALAQPDLEKLAYGPETPRGHRGLSMYKMGEWMRDAFKLNRDQRNLRIFC HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEC PDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHA CCCHHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECCCCC MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCHH FLGAMLEKHPKIISAYLPADGNSTLVYTERAYADRDKLNILVAGKKDLPQWLTLNEARQQ HHHHHHHHCCCEEEEEECCCCCCEEEEEEHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH AKDGVMVWDFASDESPDVVLVGCGDYVTQEAMASLVLIRELLPRVRIRFVSVTELTSSGL HHCCEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHCCCC GSLEFQSKPWLMDEIFTTDKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTP CCEEECCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC FDMGVRNGTSRYHLVIDMAYKLFQQSVIDETQHVAITTDMLQRLVDHRNYIKANGVDPES HHCCCCCCCCEEEEEHHHHHHHHHHHHHCCHHEEEEEHHHHHHHHHCCCEEEECCCCHHH IENWVWTR HHHCCCCC >Mature Secondary Structure AHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCEEEE ANVNRLISKHKRSFVYLVGPGHGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFS HHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHH AAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDLIAACLIGDGESETGPLAASW HHCCCCCCCCCCCCCHHCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEHHH YANRLVSPKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYQPIIVDDQLEED HHHHCCCCCCCCCEEEEEEECCEEECCCCHHCCCCCHHCCEEEECCCCCEEEECCCCCHH VYLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFNGKKLEGNC HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEECCCC ESHQVIVNKCASDKGHLDALNTWLASYKFSELYSISDKGELIFDQDIQSLLPPKELSCGR CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCCCEEECCCHHHHCCCHHHHHHH QHLSYGGEVVRALAQPDLEKLAYGPETPRGHRGLSMYKMGEWMRDAFKLNRDQRNLRIFC HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEC PDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHA CCCHHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECCCCC MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCHH FLGAMLEKHPKIISAYLPADGNSTLVYTERAYADRDKLNILVAGKKDLPQWLTLNEARQQ HHHHHHHHCCCEEEEEECCCCCCEEEEEEHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH AKDGVMVWDFASDESPDVVLVGCGDYVTQEAMASLVLIRELLPRVRIRFVSVTELTSSGL HHCCEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHCCCC GSLEFQSKPWLMDEIFTTDKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTP CCEEECCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC FDMGVRNGTSRYHLVIDMAYKLFQQSVIDETQHVAITTDMLQRLVDHRNYIKANGVDPES HHCCCCCCCCEEEEEHHHHHHHHHHHHHCCHHEEEEEHHHHHHHHHCCCEEEECCCCHHH IENWVWTR HHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]