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The map label for this gene is raiA [H]

Identifier: 157960888

GI number: 157960888

Start: 1284778

End: 1285140

Strand: Reverse

Name: raiA [H]

Synonym: Spea_1060

Alternate gene names: 157960888

Gene position: 1285140-1284778 (Counterclockwise)

Preceding gene: 157960890

Following gene: 157960887

Centisome position: 24.84

GC content: 41.32

Gene sequence:

>363_bases
ATGATAAAGATTACTAGCAAGCATTTCGAAGTTACTGAATCTATCCGCGAACGTATTGAAGCCAGATTAGAAAAGTTAGC
CAGACACGATGTGCAGCTAATTAATCCACACGTTATTATTCTACAGGAGAAGCAAGGGTTTAAGATTGAAGCTTCTGTGG
GCATACCAAGTGCCAAGTTATTTGCCCAGGCGAAACACGACGACCTTTACGCAGCAATTAATGCAATGGGACAAAAGCTG
GAGAAACAGCTAAATCGCCTGACTCATAAACCAGAAAGTCAACGTCACGCAACACTTAAAATAGAAGATGATGCCATTGA
TGACGACTTTGATGATAACTTAGAGGAGGAATACGCAGCTTGA

Upstream 100 bases:

>100_bases
CCGAACAGTCTAAAAGAGCCCTTAAAACGTGATTTAGATCACGACTTTCCTACCTGAGATTGGTAGTCTGAACTCAAGGA
AACAACAAAAGGTTCGATAT

Downstream 100 bases:

>100_bases
TATCATTGTTAAAATTACACGCAAAGCGCACCCTCGGGTGCGCTTTTTTATGCAAAAAACTCAATTAGACCAAGTTTTGA
TTGACACTCTAGTCCCACCC

Product: sigma 54 modulation protein/30S ribosomal protein S30EA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MIKITSKHFEVTESIRERIEARLEKLARHDVQLINPHVIILQEKQGFKIEASVGIPSAKLFAQAKHDDLYAAINAMGQKL
EKQLNRLTHKPESQRHATLKIEDDAIDDDFDDNLEEEYAA

Sequences:

>Translated_120_residues
MIKITSKHFEVTESIRERIEARLEKLARHDVQLINPHVIILQEKQGFKIEASVGIPSAKLFAQAKHDDLYAAINAMGQKL
EKQLNRLTHKPESQRHATLKIEDDAIDDDFDDNLEEEYAA
>Mature_120_residues
MIKITSKHFEVTESIRERIEARLEKLARHDVQLINPHVIILQEKQGFKIEASVGIPSAKLFAQAKHDDLYAAINAMGQKL
EKQLNRLTHKPESQRHATLKIEDDAIDDDFDDNLEEEYAA

Specific function: During environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored,

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1788949, Length=116, Percent_Identity=43.9655172413793, Blast_Score=101, Evalue=1e-23,

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 13774; Mature: 13774

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKITSKHFEVTESIRERIEARLEKLARHDVQLINPHVIILQEKQGFKIEASVGIPSAKL
CEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEEECCCCCEEEECCCCCHHHH
FAQAKHDDLYAAINAMGQKLEKQLNRLTHKPESQRHATLKIEDDAIDDDFDDNLEEEYAA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MIKITSKHFEVTESIRERIEARLEKLARHDVQLINPHVIILQEKQGFKIEASVGIPSAKL
CEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEEECCCCCEEEECCCCCHHHH
FAQAKHDDLYAAINAMGQKLEKQLNRLTHKPESQRHATLKIEDDAIDDDFDDNLEEEYAA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]