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The map label for this gene is cph2 [H]

Identifier: 157960576

GI number: 157960576

Start: 925608

End: 926735

Strand: Direct

Name: cph2 [H]

Synonym: Spea_0748

Alternate gene names: 157960576

Gene position: 925608-926735 (Clockwise)

Preceding gene: 157960575

Following gene: 157960580

Centisome position: 17.89

GC content: 41.67

Gene sequence:

>1128_bases
ATGGATCCAGTTCTGAAGTCACATCAATACAAAGCGCAATTGAAGCGTGAAACCTTCATCATTATCAAGCGTGGCACTAT
CTGGGCGACATATATTAGTTGCGTTCTAGCATTTGTAGTATTAATCAGTAGATATAACTTTATTGGCGATAACGTCGAAT
TTATCGAGCTGCACTCCAAGTTTGCGCCACTTATGACCGTTATCATAAGTGGTCTTGCGTGGTTAAAGTATCGAACTTTG
TTTTTGGTCACGATGAGTCAAACTTATTTCTACCTCGTGTTGCTCATTATGTCATGGTGTTATGTGCTTATAAGCTTCGC
TTTGAAAGTAGGGCATAGCATGCCGGGTTTAGGCTCTCTATCGCACGTGTTGGTTTTTGTATTTTCGCTAGCACTCTTTC
CGAATCGAAATGTGATGATATTAGGGATCTTACCATTCCTAGTCTTTAGCGTTGTTTATCATTCTTTTCATTATCCCAGT
GCATTGATTTATTCCATCCCTAAAATTTTATGTTTCTTAGGCATTCTTATATCAGGCCAGAAAATTATCTCAGGCTGGTT
CTTTAAGGCGGTCACACGCAGCATCGAAAACAAGAAGCTGTTACAGCAGTTTAAACGTTTGGCTTTAATTGATGGCTTGA
CCAATATTAGTAATCGTCGTCACTTTGATGATGTATTAACTCAAGAGATAAAAGCATCACTTCGAACTCTGCAACCGTTA
TCTATCATCATGGTTGATGTGGATTTCTTTAAACCGCTTAACGATAGCCTTGGTCATCAAGTAGGTGATAAGCATTTAAC
AAAAATTGCAGCAGTATTGAATAGTGCACTAGAGCGACCAAGGGATCTGGTGGCTCGTTACGGCGGAGAAGAGTTTGTTA
TCGCGCTGCCTGATACCGATTTAAGCGGTGCTATTCGAGTCGCCGAAAAGATTAAACTGGCAATATCGGATGCTGAACTG
CACCACCCAAGCTCGAAAGTTTCAGGCTATGTTACCGTCTCTCAAGGCGTGGCGCAGTGGCAAGAGGGAATGGTTCCTGC
TCAGCTGCTAGAGATGACTGATAAGCTGTTATATCAAGCCAAGTCTAGCGGCAGAGATCGTTATTGCTCTGAGCATCAAG
CTCTTTAA

Upstream 100 bases:

>100_bases
AAAGTCAGCAAATGCTGGCTTTTTTTATGCTTTAACAGTATTAATAGCTCCGTTAATAGTGACATTTCTTATAGGCTAAA
TATAGTCAGCCTTTCCATCA

Downstream 100 bases:

>100_bases
ATCGTAGCTGATTTAGCTCCTACGACTAACTACGAGAGAAGCTTGACGTTGTAAATCTTTAGGCCGTGGTATTGATATTA
TGGCCACTGTTACCTACAGG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MDPVLKSHQYKAQLKRETFIIIKRGTIWATYISCVLAFVVLISRYNFIGDNVEFIELHSKFAPLMTVIISGLAWLKYRTL
FLVTMSQTYFYLVLLIMSWCYVLISFALKVGHSMPGLGSLSHVLVFVFSLALFPNRNVMILGILPFLVFSVVYHSFHYPS
ALIYSIPKILCFLGILISGQKIISGWFFKAVTRSIENKKLLQQFKRLALIDGLTNISNRRHFDDVLTQEIKASLRTLQPL
SIIMVDVDFFKPLNDSLGHQVGDKHLTKIAAVLNSALERPRDLVARYGGEEFVIALPDTDLSGAIRVAEKIKLAISDAEL
HHPSSKVSGYVTVSQGVAQWQEGMVPAQLLEMTDKLLYQAKSSGRDRYCSEHQAL

Sequences:

>Translated_375_residues
MDPVLKSHQYKAQLKRETFIIIKRGTIWATYISCVLAFVVLISRYNFIGDNVEFIELHSKFAPLMTVIISGLAWLKYRTL
FLVTMSQTYFYLVLLIMSWCYVLISFALKVGHSMPGLGSLSHVLVFVFSLALFPNRNVMILGILPFLVFSVVYHSFHYPS
ALIYSIPKILCFLGILISGQKIISGWFFKAVTRSIENKKLLQQFKRLALIDGLTNISNRRHFDDVLTQEIKASLRTLQPL
SIIMVDVDFFKPLNDSLGHQVGDKHLTKIAAVLNSALERPRDLVARYGGEEFVIALPDTDLSGAIRVAEKIKLAISDAEL
HHPSSKVSGYVTVSQGVAQWQEGMVPAQLLEMTDKLLYQAKSSGRDRYCSEHQAL
>Mature_375_residues
MDPVLKSHQYKAQLKRETFIIIKRGTIWATYISCVLAFVVLISRYNFIGDNVEFIELHSKFAPLMTVIISGLAWLKYRTL
FLVTMSQTYFYLVLLIMSWCYVLISFALKVGHSMPGLGSLSHVLVFVFSLALFPNRNVMILGILPFLVFSVVYHSFHYPS
ALIYSIPKILCFLGILISGQKIISGWFFKAVTRSIENKKLLQQFKRLALIDGLTNISNRRHFDDVLTQEIKASLRTLQPL
SIIMVDVDFFKPLNDSLGHQVGDKHLTKIAAVLNSALERPRDLVARYGGEEFVIALPDTDLSGAIRVAEKIKLAISDAEL
HHPSSKVSGYVTVSQGVAQWQEGMVPAQLLEMTDKLLYQAKSSGRDRYCSEHQAL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=35.1190476190476, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=36.7816091954023, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693134, Length=171, Percent_Identity=32.7485380116959, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082007, Length=213, Percent_Identity=33.8028169014084, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786584, Length=185, Percent_Identity=30.2702702702703, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788381, Length=196, Percent_Identity=30.6122448979592, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787802, Length=176, Percent_Identity=31.8181818181818, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=30.4878048780488, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788085, Length=174, Percent_Identity=31.6091954022989, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787541, Length=175, Percent_Identity=26.8571428571429, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787056, Length=183, Percent_Identity=28.4153005464481, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081974, Length=169, Percent_Identity=27.810650887574, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 42349; Mature: 42349

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPVLKSHQYKAQLKRETFIIIKRGTIWATYISCVLAFVVLISRYNFIGDNVEFIELHSK
CCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
FAPLMTVIISGLAWLKYRTLFLVTMSQTYFYLVLLIMSWCYVLISFALKVGHSMPGLGSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
SHVLVFVFSLALFPNRNVMILGILPFLVFSVVYHSFHYPSALIYSIPKILCFLGILISGQ
HHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCH
KIISGWFFKAVTRSIENKKLLQQFKRLALIDGLTNISNRRHFDDVLTQEIKASLRTLQPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCH
SIIMVDVDFFKPLNDSLGHQVGDKHLTKIAAVLNSALERPRDLVARYGGEEFVIALPDTD
HEEEEEHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEEEECCCC
LSGAIRVAEKIKLAISDAELHHPSSKVSGYVTVSQGVAQWQEGMVPAQLLEMTDKLLYQA
CHHHHHHHHHHHHHCCHHHHCCCHHHCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH
KSSGRDRYCSEHQAL
HHCCCCHHHHHCCCC
>Mature Secondary Structure
MDPVLKSHQYKAQLKRETFIIIKRGTIWATYISCVLAFVVLISRYNFIGDNVEFIELHSK
CCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
FAPLMTVIISGLAWLKYRTLFLVTMSQTYFYLVLLIMSWCYVLISFALKVGHSMPGLGSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
SHVLVFVFSLALFPNRNVMILGILPFLVFSVVYHSFHYPSALIYSIPKILCFLGILISGQ
HHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCH
KIISGWFFKAVTRSIENKKLLQQFKRLALIDGLTNISNRRHFDDVLTQEIKASLRTLQPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCH
SIIMVDVDFFKPLNDSLGHQVGDKHLTKIAAVLNSALERPRDLVARYGGEEFVIALPDTD
HEEEEEHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEEEECCCC
LSGAIRVAEKIKLAISDAELHHPSSKVSGYVTVSQGVAQWQEGMVPAQLLEMTDKLLYQA
CHHHHHHHHHHHHHCCHHHHCCCHHHCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH
KSSGRDRYCSEHQAL
HHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]