| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is cysJ [H]
Identifier: 157960481
GI number: 157960481
Start: 808052
End: 809848
Strand: Direct
Name: cysJ [H]
Synonym: Spea_0653
Alternate gene names: 157960481
Gene position: 808052-809848 (Clockwise)
Preceding gene: 157960476
Following gene: 157960482
Centisome position: 15.62
GC content: 51.14
Gene sequence:
>1797_bases ATGTTGTTAAAAGAGCTTTCATCACTCGCTTCGCCGCTATCTAGTAGCCAAGTGGACAAGTTAAAGCAGCTCACTGCAGA GCTGAATGCCGTGCAACTTTCTTGGGTTAGCGGCTATCTTGCTGCAACATCTGAGCAGGGAGTGGCAGGCTTGCCTCTGG TTGAGGCTGGCTCGCAATCTGGAGCTGAACAAACCATCACTATTCTCTATGGTAGCCAGACGGGGAATGGTCGCGGTATT GCCACCGAACTTGCCGAAAAGGCGCTGGCGCAAGGGTATGCGGTCAACCTCGTCTCTATGGGAGATTACAAGACACGACA GCTTAAGCAGGAGAGTCTGCTCTTGTTAGTCGTAAGCACCCATGGCGAAGGTGAAGCGCCAGATGATGCTATCGAACTAC ATAAGTTCTTAAGCTCTAAACGTGCCCCAAAACTGGATAACCTTAACTACTCAGTGCTGGCGTTGGGTGATTCAAGTTAT GAGTTTTTCTGTCAAACAGGTAAAGACTTCGAGACTCGTCTTAACGCATTAGGGGCGACTTCGATTGCGCCTCTGGTCGA GTGCGATGTCGACTATGAAGCTCAAGCCGAGCAGTGGCAAGCGGATGTGTTAGAGGCGGTGAAGCCATTAGTGCAGAGCT CAGGAGCCAGTGTGGTCTCTATCGCTAGCTCTCAGACATCAGGCTCTAGTTACACCAAACAAAAGCCCTACACGGCAGAA TTGCTGGTGAGTCAAAAACTAACTGGCCGCGACTCTGATAGAGACGTGCGCCATGTTGAAATTGAGCTGGGTGAGTCAGG AATAAACTACCAAGCCGGTGATGCACTCGGCGTATGGTTTACTAACTCACAAGAACTGGTTGCTGAGCTACTCGAAGCCT TAGCGCTCGATGGCGATGAGTCTGTCTCTGTTGGTAGCGATAGCTTGAGTCTGCGTGAAGCGCTAACCAGTAAGAAAGAG CTGACCCAGCTTTATCCAGGTTTAGTCACTGGTTGGGCGGAACTGAGTCAGAATGCTGAGCTGTTGGCCATTAGCGCCGA TAAAGCGTTAACCCGAGAGTTTGTCAATAACAATCAAGTGGCCGATCTAGTTCGTCAGTACCCGGCTAAGGTGGCTGCAG AGCAGTTTATTGAGCTACTGCGCGGCATTACCCCAAGACTCTACTCAATTGCATCGAGTCAGGCTGAGGTCGAGTCCGAG GTGCACTTGACCGTGGCGCTGGTCGAAGATGAACGTGATGGTGTAACCCGCTTTGGTGGTGCATCTCAGTTCTTAGCGGC CGCCGAAGAGGGTCAAGAAGTACAAGTTTATGTCGAGCCTAATAATCACTTCCGTCTACCAGAAAACCCTGAAACGCCGG TGATCATGGTGGGCCCTGGCACAGGTGTGGCTCCTTTCAGAGCCTTCATGCAAGAACGTGCTGCACTGGGCGCCGAGGGT AATACTTGGTTGATCTTCGGTAACCCGCATTTTGAGCAAGACTTCCTCTACCAAACAGAGTGGCAGCAGTATCTGCAAAG CGGCGAATTATCGCGTATCGACTTGGCGTTTTCACGGGATCAAGAGCACAAGATCTATGTGCAGCACAAGATCGCCGAGC AAGGTGAGGCGCTTTGGCAATGGTTAGCGTCCGGTGCGCACTTCTATGTCTGTGGTGACGCCGAACGTATGGCGAAAGAT GTCCACCAAGCGCTGCTCGATGTGGCCGTTAAATACGGTAATAAAACTCAAGAGCAAGCGGCTGAATATCTCGAAGAGCT AAGAGCGGCCAAGCGCTATCAAAAAGACGTTTACTAA
Upstream 100 bases:
>100_bases GTATATTCCAAAATCGAATTAAAAATTATCTTTTATTCTTTTTTTATTATTTAAGGAGGGGCTAAGCTGGCCAACATTAA ACTGATACAGGGCCGTTTCT
Downstream 100 bases:
>100_bases GACTCAGCTTTAAACGAGTAAAGCAATGATGAGCGACGCTAGAGTTAACTAGCGCGAGTGCAGAAAAGAATTTTAAGAGA GTACCTAGCTATGAGTGAGC
Product: sulfite reductase (NADPH) flavoprotein subunit alpha
Products: NA
Alternate protein names: SiR-FP [H]
Number of amino acids: Translated: 598; Mature: 598
Protein sequence:
>598_residues MLLKELSSLASPLSSSQVDKLKQLTAELNAVQLSWVSGYLAATSEQGVAGLPLVEAGSQSGAEQTITILYGSQTGNGRGI ATELAEKALAQGYAVNLVSMGDYKTRQLKQESLLLLVVSTHGEGEAPDDAIELHKFLSSKRAPKLDNLNYSVLALGDSSY EFFCQTGKDFETRLNALGATSIAPLVECDVDYEAQAEQWQADVLEAVKPLVQSSGASVVSIASSQTSGSSYTKQKPYTAE LLVSQKLTGRDSDRDVRHVEIELGESGINYQAGDALGVWFTNSQELVAELLEALALDGDESVSVGSDSLSLREALTSKKE LTQLYPGLVTGWAELSQNAELLAISADKALTREFVNNNQVADLVRQYPAKVAAEQFIELLRGITPRLYSIASSQAEVESE VHLTVALVEDERDGVTRFGGASQFLAAAEEGQEVQVYVEPNNHFRLPENPETPVIMVGPGTGVAPFRAFMQERAALGAEG NTWLIFGNPHFEQDFLYQTEWQQYLQSGELSRIDLAFSRDQEHKIYVQHKIAEQGEALWQWLASGAHFYVCGDAERMAKD VHQALLDVAVKYGNKTQEQAAEYLEELRAAKRYQKDVY
Sequences:
>Translated_598_residues MLLKELSSLASPLSSSQVDKLKQLTAELNAVQLSWVSGYLAATSEQGVAGLPLVEAGSQSGAEQTITILYGSQTGNGRGI ATELAEKALAQGYAVNLVSMGDYKTRQLKQESLLLLVVSTHGEGEAPDDAIELHKFLSSKRAPKLDNLNYSVLALGDSSY EFFCQTGKDFETRLNALGATSIAPLVECDVDYEAQAEQWQADVLEAVKPLVQSSGASVVSIASSQTSGSSYTKQKPYTAE LLVSQKLTGRDSDRDVRHVEIELGESGINYQAGDALGVWFTNSQELVAELLEALALDGDESVSVGSDSLSLREALTSKKE LTQLYPGLVTGWAELSQNAELLAISADKALTREFVNNNQVADLVRQYPAKVAAEQFIELLRGITPRLYSIASSQAEVESE VHLTVALVEDERDGVTRFGGASQFLAAAEEGQEVQVYVEPNNHFRLPENPETPVIMVGPGTGVAPFRAFMQERAALGAEG NTWLIFGNPHFEQDFLYQTEWQQYLQSGELSRIDLAFSRDQEHKIYVQHKIAEQGEALWQWLASGAHFYVCGDAERMAKD VHQALLDVAVKYGNKTQEQAAEYLEELRAAKRYQKDVY >Mature_598_residues MLLKELSSLASPLSSSQVDKLKQLTAELNAVQLSWVSGYLAATSEQGVAGLPLVEAGSQSGAEQTITILYGSQTGNGRGI ATELAEKALAQGYAVNLVSMGDYKTRQLKQESLLLLVVSTHGEGEAPDDAIELHKFLSSKRAPKLDNLNYSVLALGDSSY EFFCQTGKDFETRLNALGATSIAPLVECDVDYEAQAEQWQADVLEAVKPLVQSSGASVVSIASSQTSGSSYTKQKPYTAE LLVSQKLTGRDSDRDVRHVEIELGESGINYQAGDALGVWFTNSQELVAELLEALALDGDESVSVGSDSLSLREALTSKKE LTQLYPGLVTGWAELSQNAELLAISADKALTREFVNNNQVADLVRQYPAKVAAEQFIELLRGITPRLYSIASSQAEVESE VHLTVALVEDERDGVTRFGGASQFLAAAEEGQEVQVYVEPNNHFRLPENPETPVIMVGPGTGVAPFRAFMQERAALGAEG NTWLIFGNPHFEQDFLYQTEWQQYLQSGELSRIDLAFSRDQEHKIYVQHKIAEQGEALWQWLASGAHFYVCGDAERMAKD VHQALLDVAVKYGNKTQEQAAEYLEELRAAKRYQKDVY
Specific function: Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow f
COG id: COG0369
COG function: function code P; Sulfite reductase, alpha subunit (flavoprotein)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 flavodoxin-like domain [H]
Homologues:
Organism=Homo sapiens, GI7657393, Length=599, Percent_Identity=30.8848080133556, Blast_Score=250, Evalue=3e-66, Organism=Homo sapiens, GI221316709, Length=598, Percent_Identity=30.6020066889632, Blast_Score=245, Evalue=8e-65, Organism=Homo sapiens, GI221316705, Length=608, Percent_Identity=30.4276315789474, Blast_Score=242, Evalue=7e-64, Organism=Homo sapiens, GI127139033, Length=617, Percent_Identity=30.4700162074554, Blast_Score=236, Evalue=5e-62, Organism=Homo sapiens, GI221316707, Length=526, Percent_Identity=31.5589353612167, Blast_Score=220, Evalue=4e-57, Organism=Homo sapiens, GI24041029, Length=594, Percent_Identity=29.6296296296296, Blast_Score=211, Evalue=2e-54, Organism=Homo sapiens, GI10835173, Length=643, Percent_Identity=27.0606531881804, Blast_Score=174, Evalue=3e-43, Organism=Homo sapiens, GI40254422, Length=643, Percent_Identity=26.7496111975117, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI169790956, Length=419, Percent_Identity=29.8329355608592, Blast_Score=153, Evalue=4e-37, Organism=Homo sapiens, GI169790958, Length=419, Percent_Identity=29.8329355608592, Blast_Score=153, Evalue=4e-37, Organism=Escherichia coli, GI1789123, Length=590, Percent_Identity=52.0338983050847, Blast_Score=605, Evalue=1e-174, Organism=Caenorhabditis elegans, GI17554134, Length=605, Percent_Identity=28.4297520661157, Blast_Score=230, Evalue=1e-60, Organism=Caenorhabditis elegans, GI17566446, Length=574, Percent_Identity=28.397212543554, Blast_Score=168, Evalue=9e-42, Organism=Caenorhabditis elegans, GI17531441, Length=256, Percent_Identity=26.171875, Blast_Score=87, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6321832, Length=638, Percent_Identity=28.9968652037618, Blast_Score=206, Evalue=1e-53, Organism=Saccharomyces cerevisiae, GI6321143, Length=391, Percent_Identity=31.7135549872123, Blast_Score=162, Evalue=1e-40, Organism=Saccharomyces cerevisiae, GI6325305, Length=633, Percent_Identity=22.9067930489731, Blast_Score=134, Evalue=5e-32, Organism=Saccharomyces cerevisiae, GI6322597, Length=164, Percent_Identity=29.8780487804878, Blast_Score=66, Evalue=1e-11, Organism=Drosophila melanogaster, GI17137192, Length=606, Percent_Identity=29.2079207920792, Blast_Score=233, Evalue=2e-61, Organism=Drosophila melanogaster, GI24582192, Length=517, Percent_Identity=28.6266924564797, Blast_Score=196, Evalue=4e-50, Organism=Drosophila melanogaster, GI24660907, Length=594, Percent_Identity=26.9360269360269, Blast_Score=188, Evalue=9e-48, Organism=Drosophila melanogaster, GI24660903, Length=594, Percent_Identity=26.9360269360269, Blast_Score=188, Evalue=9e-48, Organism=Drosophila melanogaster, GI78706872, Length=521, Percent_Identity=27.831094049904, Blast_Score=153, Evalue=4e-37, Organism=Drosophila melanogaster, GI24583543, Length=521, Percent_Identity=27.831094049904, Blast_Score=153, Evalue=4e-37, Organism=Drosophila melanogaster, GI78706876, Length=521, Percent_Identity=27.831094049904, Blast_Score=153, Evalue=4e-37, Organism=Drosophila melanogaster, GI24647438, Length=409, Percent_Identity=26.6503667481663, Blast_Score=86, Evalue=8e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010199 - InterPro: IPR003097 - InterPro: IPR017927 - InterPro: IPR001094 - InterPro: IPR008254 - InterPro: IPR001709 - InterPro: IPR023173 - InterPro: IPR001433 - InterPro: IPR017938 [H]
Pfam domain/function: PF00667 FAD_binding_1; PF00258 Flavodoxin_1; PF00175 NAD_binding_1 [H]
EC number: =1.8.1.2 [H]
Molecular weight: Translated: 65364; Mature: 65364
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: PS50902 FLAVODOXIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLKELSSLASPLSSSQVDKLKQLTAELNAVQLSWVSGYLAATSEQGVAGLPLVEAGSQS CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEEHHHHHHCCCCCCCCCCCEEECCCCC GAEQTITILYGSQTGNGRGIATELAEKALAQGYAVNLVSMGDYKTRQLKQESLLLLVVST CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCEEEEEEEC HGEGEAPDDAIELHKFLSSKRAPKLDNLNYSVLALGDSSYEFFCQTGKDFETRLNALGAT CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHCCCC SIAPLVECDVDYEAQAEQWQADVLEAVKPLVQSSGASVVSIASSQTSGSSYTKQKPYTAE CCCHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHH LLVSQKLTGRDSDRDVRHVEIELGESGINYQAGDALGVWFTNSQELVAELLEALALDGDE HHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCC SVSVGSDSLSLREALTSKKELTQLYPGLVTGWAELSQNAELLAISADKALTREFVNNNQV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCHH ADLVRQYPAKVAAEQFIELLRGITPRLYSIASSQAEVESEVHLTVALVEDERDGVTRFGG HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHCCCEEEEEEEEECCCCCCHHCCC ASQFLAAAEEGQEVQVYVEPNNHFRLPENPETPVIMVGPGTGVAPFRAFMQERAALGAEG HHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC NTWLIFGNPHFEQDFLYQTEWQQYLQSGELSRIDLAFSRDQEHKIYVQHKIAEQGEALWQ CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHH WLASGAHFYVCGDAERMAKDVHQALLDVAVKYGNKTQEQAAEYLEELRAAKRYQKDVY HHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLLKELSSLASPLSSSQVDKLKQLTAELNAVQLSWVSGYLAATSEQGVAGLPLVEAGSQS CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEEHHHHHHCCCCCCCCCCCEEECCCCC GAEQTITILYGSQTGNGRGIATELAEKALAQGYAVNLVSMGDYKTRQLKQESLLLLVVST CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCEEEEEEEC HGEGEAPDDAIELHKFLSSKRAPKLDNLNYSVLALGDSSYEFFCQTGKDFETRLNALGAT CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHCCCC SIAPLVECDVDYEAQAEQWQADVLEAVKPLVQSSGASVVSIASSQTSGSSYTKQKPYTAE CCCHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHH LLVSQKLTGRDSDRDVRHVEIELGESGINYQAGDALGVWFTNSQELVAELLEALALDGDE HHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCC SVSVGSDSLSLREALTSKKELTQLYPGLVTGWAELSQNAELLAISADKALTREFVNNNQV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCHH ADLVRQYPAKVAAEQFIELLRGITPRLYSIASSQAEVESEVHLTVALVEDERDGVTRFGG HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHCCCEEEEEEEEECCCCCCHHCCC ASQFLAAAEEGQEVQVYVEPNNHFRLPENPETPVIMVGPGTGVAPFRAFMQERAALGAEG HHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC NTWLIFGNPHFEQDFLYQTEWQQYLQSGELSRIDLAFSRDQEHKIYVQHKIAEQGEALWQ CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHH WLASGAHFYVCGDAERMAKDVHQALLDVAVKYGNKTQEQAAEYLEELRAAKRYQKDVY HHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]