| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is metL [H]
Identifier: 157960390
GI number: 157960390
Start: 687943
End: 690336
Strand: Direct
Name: metL [H]
Synonym: Spea_0561
Alternate gene names: 157960390
Gene position: 687943-690336 (Clockwise)
Preceding gene: 157960389
Following gene: 157960391
Centisome position: 13.29
GC content: 48.87
Gene sequence:
>2394_bases ATGGCACGCTGTCACTTACATAAATTTGGTGGCTCAAGTCTTGCTGATGCAGACTGTTACCGTCGCGTGGCTCATATTCT GCTGACTCACGGTCACAGCGATGACTTAGTTGTGGTGTCTGCGGCAGGTAAAAGCACCAATTTCTTATATAAGTTACTCG AGTTGAGTACGACTAAGCAGCTGTGGCAAGAAGAGCTACAAACACTGATTAGTTTCCAGCAAAATTTGATTGAGCAATTG CTCTCAAATGAGCAGGCACGCTCTCTTCGGGAGCGACTCTCTAACGATAAAGCGCAGCTAATCAGCTTGCTATCGATAGA GTCGATTAATGAATACCAAAGCAATCAGGTAGTGAGCTTTGGCGAGCGTTGGTCTGCACGCCTATTGGCGGCGCTATTAC GTGAATCGGGTGTGGCGGCATCGGATGTAGATGCTCGCACACTCTTGATTGCCGACGAAGCGGCTGTACCGCAGATTCGT TTACAGGATTCCCGTCAACGTGTGCATTCGATGACTGAAACTCATCCTAATGAGCGTCTAATTATTACTGGCTTTATCTG CGCGAACGAGCGGGGTGACACCTTGCTACTAGGACGTAACGGCTCCGATTTCAGTGCGACCTTGATTGCCAGCTTAGCAG ATATTGAGCGCGTGACCATTTGGACCGATGTAGAGGGCGTATTTAACGCCGACCCAAATAAGATCAACGATGCTAAGTTA CTGAGTAGTTTGTCATTAGCCGAAGCTAACCGCTTGGCACATCTAGGTTCACCTGTGCTGCATAATAGAACGCTGCAACC GCTGTTTGATACTCAAGTGAGTTTGGCTGTTCGTTCTAGTTACGCGTCCCATACCGACTTTACCTTGATTGCACCAAAGA GTTCGTCGGCTAGTGCGCCAGTGGTTACTAATCTAAGCAGCGTTGCGCTGTTCAATCTTGAGCTTACAACGGAACTTAAG CAGCTTATTGAGCTGCTCGAGGAGACTGGCCTGAGTCCGCTGGCATACTGGGAACTTGGGCAGGGGCGCGCCGAGATCAC TGTGACCTTAGAAAATCAGAAGCAGGTATTGGCATTACTGGATATTAACCGTGACGCCTTAGGCGTGAGTGATATTAAGA TCACCGAAGATCTTGGCCTGGTTGCGCTGGTCAGCGCCGATGCCAGCCTGTATCGCCGCGGCTTTGCAAGATTACTGAGT CGTAATGCTAGACCGCTGTTTAACGACGGCATGAGCCTAGTGACCTTGGTACCTCAAGGGCAAGTAAACTTGTTAACTCA AAAAGTACACCGTCGCTGCGCGGGGCCTCGCAAACGTATCGGCGTACTGCTATTGGGTGTCGGTAACATTGGCGAAGCTT GGGTTGAACTCTTTAGTGGCGCTAAGGCAGCACTCAATAAAGAGCTCGAGGCTAGTGTAGAGTTGGTTGGTTTGGTTAGC TCACGTAACGCTTTGATCTGCGATGAGGGCATTGAGCTCGATTCGTGGAAGCAGGCCTTCGAAGAACACGCCACTCCATG GCAATACAGCCATCTGTTTGAAGAGTTACATGATTTAGAGTGTGATGAAGTGATTGCGCTGGATATTAGTGCCAGCGCCG ATTTGACCTTGCAATATCCAGAGTTTTTCGCTCGTGGTATTCATGTTGTCAGCGCTAATAAATTAGCCGGTTCTGGACCA CTAACCTTCTATCGTGAATTGAAACAGCAATTGGATAACCGTCGCTTATTTTGGCGTTACAACGCCAGTTGTGGCGCTGG TTTACCGGTACAACATGCATTGAACGATCTGCATAACAGCGGCGACAGTATCGAAGCTGTTGGCGGGATCTTCTCTGGCA CTCTTTGTTGGTTATTTGAAAACTTCGATGCCAAGAAACCTTTCTCTGAGTTAGTTATTGAGGCGAGGGGCTTAGGGATC ACCGAGCCAGATCCACGTGATGATCTGTCGGGTCGAGACATGCAGCGTAAACTACTCATTCTTGCCCGCGAGATAGGTTT TGAGATTGAGCTTGAAGATATTGAGCTTAAATCTTTAGTGCCAGCAAACTTGGCTGAAATCCCTCTAGAGCAGTTTTTAT CGCGTATCACCGAGCTCGATGATGAGATGCAGCAGCAGTTTATTGCGGCTGCAGAGCAAGATAAGGTGCTGAGATACGTG GCCTCTTTAGATAAGGTCGATGGCGAGTTAAAAGCCGAGGTGGGGATACAGTGGGTTGATATCAGCCACCCCTATGCGAA CCTAACGCCAGGTGACAACGTGTTTGTGATCCGCAGTGAATTCTATCAGGAAAATCCGTTGATTATTCGTGGCCCTGGAG CCGGGCGTTTAGTGACAGCAGCGGCTGTACAGTCTGATCTGGCACATATCTGTCGCGATCTGCTACAAGAATAA
Upstream 100 bases:
>100_bases TATTCGTCTGTCTGTGGGTATCGAAGATGCCGATGATCTTGTTGCCGATATTGAAGCTGCGCTTAATGCCGCAGCCGCTT GTTAATTAAAGGGGTATACG
Downstream 100 bases:
>100_bases TTTTCACGTTAATCAATAGAAAGGGCTCATTTGAGCCCTTTTTTATTGACTTGTTTATTATGATTTTATTGTTTTAATAA AAAAACTCATTTGCCTGCTT
Product: bifunctional aspartate kinase II/homoserine dehydrogenase II
Products: NA
Alternate protein names: Aspartokinase II/homoserine dehydrogenase II; AKII-HDII; Aspartokinase; Homoserine dehydrogenase [H]
Number of amino acids: Translated: 797; Mature: 796
Protein sequence:
>797_residues MARCHLHKFGGSSLADADCYRRVAHILLTHGHSDDLVVVSAAGKSTNFLYKLLELSTTKQLWQEELQTLISFQQNLIEQL LSNEQARSLRERLSNDKAQLISLLSIESINEYQSNQVVSFGERWSARLLAALLRESGVAASDVDARTLLIADEAAVPQIR LQDSRQRVHSMTETHPNERLIITGFICANERGDTLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKL LSSLSLAEANRLAHLGSPVLHNRTLQPLFDTQVSLAVRSSYASHTDFTLIAPKSSSASAPVVTNLSSVALFNLELTTELK QLIELLEETGLSPLAYWELGQGRAEITVTLENQKQVLALLDINRDALGVSDIKITEDLGLVALVSADASLYRRGFARLLS RNARPLFNDGMSLVTLVPQGQVNLLTQKVHRRCAGPRKRIGVLLLGVGNIGEAWVELFSGAKAALNKELEASVELVGLVS SRNALICDEGIELDSWKQAFEEHATPWQYSHLFEELHDLECDEVIALDISASADLTLQYPEFFARGIHVVSANKLAGSGP LTFYRELKQQLDNRRLFWRYNASCGAGLPVQHALNDLHNSGDSIEAVGGIFSGTLCWLFENFDAKKPFSELVIEARGLGI TEPDPRDDLSGRDMQRKLLILAREIGFEIELEDIELKSLVPANLAEIPLEQFLSRITELDDEMQQQFIAAAEQDKVLRYV ASLDKVDGELKAEVGIQWVDISHPYANLTPGDNVFVIRSEFYQENPLIIRGPGAGRLVTAAAVQSDLAHICRDLLQE
Sequences:
>Translated_797_residues MARCHLHKFGGSSLADADCYRRVAHILLTHGHSDDLVVVSAAGKSTNFLYKLLELSTTKQLWQEELQTLISFQQNLIEQL LSNEQARSLRERLSNDKAQLISLLSIESINEYQSNQVVSFGERWSARLLAALLRESGVAASDVDARTLLIADEAAVPQIR LQDSRQRVHSMTETHPNERLIITGFICANERGDTLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKL LSSLSLAEANRLAHLGSPVLHNRTLQPLFDTQVSLAVRSSYASHTDFTLIAPKSSSASAPVVTNLSSVALFNLELTTELK QLIELLEETGLSPLAYWELGQGRAEITVTLENQKQVLALLDINRDALGVSDIKITEDLGLVALVSADASLYRRGFARLLS RNARPLFNDGMSLVTLVPQGQVNLLTQKVHRRCAGPRKRIGVLLLGVGNIGEAWVELFSGAKAALNKELEASVELVGLVS SRNALICDEGIELDSWKQAFEEHATPWQYSHLFEELHDLECDEVIALDISASADLTLQYPEFFARGIHVVSANKLAGSGP LTFYRELKQQLDNRRLFWRYNASCGAGLPVQHALNDLHNSGDSIEAVGGIFSGTLCWLFENFDAKKPFSELVIEARGLGI TEPDPRDDLSGRDMQRKLLILAREIGFEIELEDIELKSLVPANLAEIPLEQFLSRITELDDEMQQQFIAAAEQDKVLRYV ASLDKVDGELKAEVGIQWVDISHPYANLTPGDNVFVIRSEFYQENPLIIRGPGAGRLVTAAAVQSDLAHICRDLLQE >Mature_796_residues ARCHLHKFGGSSLADADCYRRVAHILLTHGHSDDLVVVSAAGKSTNFLYKLLELSTTKQLWQEELQTLISFQQNLIEQLL SNEQARSLRERLSNDKAQLISLLSIESINEYQSNQVVSFGERWSARLLAALLRESGVAASDVDARTLLIADEAAVPQIRL QDSRQRVHSMTETHPNERLIITGFICANERGDTLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKLL SSLSLAEANRLAHLGSPVLHNRTLQPLFDTQVSLAVRSSYASHTDFTLIAPKSSSASAPVVTNLSSVALFNLELTTELKQ LIELLEETGLSPLAYWELGQGRAEITVTLENQKQVLALLDINRDALGVSDIKITEDLGLVALVSADASLYRRGFARLLSR NARPLFNDGMSLVTLVPQGQVNLLTQKVHRRCAGPRKRIGVLLLGVGNIGEAWVELFSGAKAALNKELEASVELVGLVSS RNALICDEGIELDSWKQAFEEHATPWQYSHLFEELHDLECDEVIALDISASADLTLQYPEFFARGIHVVSANKLAGSGPL TFYRELKQQLDNRRLFWRYNASCGAGLPVQHALNDLHNSGDSIEAVGGIFSGTLCWLFENFDAKKPFSELVIEARGLGIT EPDPRDDLSGRDMQRKLLILAREIGFEIELEDIELKSLVPANLAEIPLEQFLSRITELDDEMQQQFIAAAEQDKVLRYVA SLDKVDGELKAEVGIQWVDISHPYANLTPGDNVFVIRSEFYQENPLIIRGPGAGRLVTAAAVQSDLAHICRDLLQE
Specific function: Catalyzes 2 nonconsecutive reactions in the common biosynthetic pathway leading from Asp to diaminopimelate and Lys, to Met, and to Thr and Ile. [C]
COG id: COG0460
COG function: function code E; Homoserine dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the homoserine dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1790376, Length=814, Percent_Identity=41.1547911547912, Blast_Score=561, Evalue=1e-161, Organism=Escherichia coli, GI1786183, Length=827, Percent_Identity=29.3833131801693, Blast_Score=320, Evalue=2e-88, Organism=Escherichia coli, GI1790455, Length=298, Percent_Identity=32.5503355704698, Blast_Score=117, Evalue=2e-27, Organism=Saccharomyces cerevisiae, GI6322599, Length=346, Percent_Identity=32.9479768786127, Blast_Score=161, Evalue=4e-40, Organism=Saccharomyces cerevisiae, GI6320893, Length=311, Percent_Identity=22.508038585209, Blast_Score=82, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001048 - InterPro: IPR005106 - InterPro: IPR001341 - InterPro: IPR018042 - InterPro: IPR011147 - InterPro: IPR001342 - InterPro: IPR019811 - InterPro: IPR016040 [H]
Pfam domain/function: PF00696 AA_kinase; PF00742 Homoserine_dh; PF03447 NAD_binding_3 [H]
EC number: =2.7.2.4; =1.1.1.3 [H]
Molecular weight: Translated: 88075; Mature: 87944
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: PS01042 HOMOSER_DHGENASE ; PS00324 ASPARTOKINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARCHLHKFGGSSLADADCYRRVAHILLTHGHSDDLVVVSAAGKSTNFLYKLLELSTTKQ CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH LWQEELQTLISFQQNLIEQLLSNEQARSLRERLSNDKAQLISLLSIESINEYQSNQVVSF HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEH GERWSARLLAALLRESGVAASDVDARTLLIADEAAVPQIRLQDSRQRVHSMTETHPNERL HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCEE IITGFICANERGDTLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKL EEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHH LSSLSLAEANRLAHLGSPVLHNRTLQPLFDTQVSLAVRSSYASHTDFTLIAPKSSSASAP HHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC VVTNLSSVALFNLELTTELKQLIELLEETGLSPLAYWELGQGRAEITVTLENQKQVLALL CCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCEEEEEE DINRDALGVSDIKITEDLGLVALVSADASLYRRGFARLLSRNARPLFNDGMSLVTLVPQG ECCCCCCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHCCCEEEEEECCC QVNLLTQKVHRRCAGPRKRIGVLLLGVGNIGEAWVELFSGAKAALNKELEASVELVGLVS CHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHCHHHHCCEEEEEEEC SRNALICDEGIELDSWKQAFEEHATPWQYSHLFEELHDLECDEVIALDISASADLTLQYP CCCEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECH EFFARGIHVVSANKLAGSGPLTFYRELKQQLDNRRLFWRYNASCGAGLPVQHALNDLHNS HHHHCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCC GDSIEAVGGIFSGTLCWLFENFDAKKPFSELVIEARGLGITEPDPRDDLSGRDMQRKLLI CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH LAREIGFEIELEDIELKSLVPANLAEIPLEQFLSRITELDDEMQQQFIAAAEQDKVLRYV HHHHCCCEEEEECEEHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASLDKVDGELKAEVGIQWVDISHPYANLTPGDNVFVIRSEFYQENPLIIRGPGAGRLVTA HHHHHCCCCEEHCCCEEEEECCCCCCCCCCCCCEEEEEHHCCCCCCEEEECCCCCCCHHH AAVQSDLAHICRDLLQE HHHHHHHHHHHHHHHCC >Mature Secondary Structure ARCHLHKFGGSSLADADCYRRVAHILLTHGHSDDLVVVSAAGKSTNFLYKLLELSTTKQ CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH LWQEELQTLISFQQNLIEQLLSNEQARSLRERLSNDKAQLISLLSIESINEYQSNQVVSF HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEH GERWSARLLAALLRESGVAASDVDARTLLIADEAAVPQIRLQDSRQRVHSMTETHPNERL HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCEE IITGFICANERGDTLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKL EEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHH LSSLSLAEANRLAHLGSPVLHNRTLQPLFDTQVSLAVRSSYASHTDFTLIAPKSSSASAP HHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC VVTNLSSVALFNLELTTELKQLIELLEETGLSPLAYWELGQGRAEITVTLENQKQVLALL CCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCEEEEEE DINRDALGVSDIKITEDLGLVALVSADASLYRRGFARLLSRNARPLFNDGMSLVTLVPQG ECCCCCCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHCCCEEEEEECCC QVNLLTQKVHRRCAGPRKRIGVLLLGVGNIGEAWVELFSGAKAALNKELEASVELVGLVS CHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHCHHHHCCEEEEEEEC SRNALICDEGIELDSWKQAFEEHATPWQYSHLFEELHDLECDEVIALDISASADLTLQYP CCCEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECH EFFARGIHVVSANKLAGSGPLTFYRELKQQLDNRRLFWRYNASCGAGLPVQHALNDLHNS HHHHCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCC GDSIEAVGGIFSGTLCWLFENFDAKKPFSELVIEARGLGITEPDPRDDLSGRDMQRKLLI CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH LAREIGFEIELEDIELKSLVPANLAEIPLEQFLSRITELDDEMQQQFIAAAEQDKVLRYV HHHHCCCEEEEECEEHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASLDKVDGELKAEVGIQWVDISHPYANLTPGDNVFVIRSEFYQENPLIIRGPGAGRLVTA HHHHHCCCCEEHCCCEEEEECCCCCCCCCCCCCEEEEEHHCCCCCCEEEECCCCCCCHHH AAVQSDLAHICRDLLQE HHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6298218; 8346018; 9278503 [H]