BacMap

Definition	Shewanella pealeana ATCC 700345 chromosome, complete genome.
Accession	NC_009901
Length	5,174,581

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The map label for this gene is ucpA [C]

Identifier: 157960384

GI number: 157960384

Start: 682132

End: 682851

Strand: Reverse

Name: ucpA [C]

Synonym: Spea_0555

Alternate gene names: 157960384

Gene position: 682851-682132 (Counterclockwise)

Preceding gene: 157960387

Following gene: 157960383

Centisome position: 13.2

GC content: 47.5

Gene sequence:

>720_bases
ATGAAACAATTAATCGTTATTACAGGTGCATCTTCTGGTATTGGCGCAGCCATGGCTCAAGCATTCAGCGCCAAAGGCCA
TCCACTTCTTCTATTGGCTCGCCGTGTAGAGCCGATGCAAGCACTAGGTTTAGACAACAGCCTAGCAATTAGTGTAGATG
TGACCGATGCCGATGCAATGAAGGCGGCTATCGCAACAGCTGAAGAAAAGTTTGGTCCTGTAGGCTGCCTAATTAATAAC
GCTGGCGTCATGCTACTAGGCGCTGCAGATGTTCAAGATCCTGCAGAGTGGAGCCGTATGCTTAACATCAACGTGATGGG
CGTACTTAACGGTATTCACGCCGTGCTTGCAGATATGAAGGCCCGCAAGACTGGCACCATCATCAACGTTAGTTCTATTG
CAGGGCGTAAAACATTCCCGAATCACGCCGCTTACTGTGCAACAAAATTTGCAGTACATGCACTAACTGAAAACATCCGT
GAAGAAGTGGCTATGGATGATGTACGTATGGTGACTATCGCTCCTGGTGCAGTTGAAACAGCACTTTTAAGCCATACCAC
AAATGAAGAGATCAAAGCAGGTTACAACGAGTGGAAAGAGTTCATGGGCGGCGTCATTGAGCCAACAGCCGTTGCTGATG
CCGCTGTATTTGCATTCGAACAACCTCAAAACGTATGTGTACGTGAAATTGTATTAGCCCCTACGCGTCAACAGCCATAA

Upstream 100 bases:

>100_bases
CATATGTAAACAATCATATTCTCTGTAGATTATATATCAACAATAATCTGTTGGTTAGAATACTCACCAATCACTAAGAC
ACCCCACATTTGAGGCTGAT

Downstream 100 bases:

>100_bases
AAATCACTGCTCAAAAAAACTGCGATAAATCATATAGATAAAAAAGCCTAGAGTTTAACCACTCTGGGCTTTTCACTATG
TTTCTCACCAACCATCAACC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKQLIVITGASSGIGAAMAQAFSAKGHPLLLLARRVEPMQALGLDNSLAISVDVTDADAMKAAIATAEEKFGPVGCLINN
AGVMLLGAADVQDPAEWSRMLNINVMGVLNGIHAVLADMKARKTGTIINVSSIAGRKTFPNHAAYCATKFAVHALTENIR
EEVAMDDVRMVTIAPGAVETALLSHTTNEEIKAGYNEWKEFMGGVIEPTAVADAAVFAFEQPQNVCVREIVLAPTRQQP

Sequences:

>Translated_239_residues
MKQLIVITGASSGIGAAMAQAFSAKGHPLLLLARRVEPMQALGLDNSLAISVDVTDADAMKAAIATAEEKFGPVGCLINN
AGVMLLGAADVQDPAEWSRMLNINVMGVLNGIHAVLADMKARKTGTIINVSSIAGRKTFPNHAAYCATKFAVHALTENIR
EEVAMDDVRMVTIAPGAVETALLSHTTNEEIKAGYNEWKEFMGGVIEPTAVADAAVFAFEQPQNVCVREIVLAPTRQQP
>Mature_239_residues
MKQLIVITGASSGIGAAMAQAFSAKGHPLLLLARRVEPMQALGLDNSLAISVDVTDADAMKAAIATAEEKFGPVGCLINN
AGVMLLGAADVQDPAEWSRMLNINVMGVLNGIHAVLADMKARKTGTIINVSSIAGRKTFPNHAAYCATKFAVHALTENIR
EEVAMDDVRMVTIAPGAVETALLSHTTNEEIKAGYNEWKEFMGGVIEPTAVADAAVFAFEQPQNVCVREIVLAPTRQQP

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=252, Percent_Identity=29.3650793650794, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI4503817, Length=209, Percent_Identity=32.5358851674641, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI40254992, Length=226, Percent_Identity=30.0884955752212, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=30.8900523560209, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI31542939, Length=232, Percent_Identity=28.448275862069, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI7706318, Length=199, Percent_Identity=29.6482412060301, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI22507405, Length=199, Percent_Identity=31.1557788944724, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI4557649, Length=211, Percent_Identity=28.9099526066351, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI19743808, Length=205, Percent_Identity=29.2682926829268, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI150247226, Length=240, Percent_Identity=27.9166666666667, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI4758504, Length=194, Percent_Identity=32.4742268041237, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI223718074, Length=194, Percent_Identity=31.9587628865979, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI157739938, Length=226, Percent_Identity=26.1061946902655, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI50726952, Length=183, Percent_Identity=28.4153005464481, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI7705925, Length=219, Percent_Identity=28.310502283105, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI226371731, Length=191, Percent_Identity=26.7015706806283, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=28.8235294117647, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI166795268, Length=207, Percent_Identity=28.9855072463768, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7705855, Length=193, Percent_Identity=26.9430051813472, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI44680136, Length=186, Percent_Identity=24.1935483870968, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI44680133, Length=186, Percent_Identity=24.1935483870968, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI17738292, Length=186, Percent_Identity=24.1935483870968, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=27.8947368421053, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI40548397, Length=186, Percent_Identity=28.494623655914, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI214010158, Length=186, Percent_Identity=28.494623655914, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI214010156, Length=186, Percent_Identity=28.494623655914, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI22758144, Length=186, Percent_Identity=28.494623655914, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI87082100, Length=184, Percent_Identity=37.5, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1787820, Length=241, Percent_Identity=27.8008298755187, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787335, Length=192, Percent_Identity=27.0833333333333, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790717, Length=196, Percent_Identity=29.5918367346939, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082160, Length=192, Percent_Identity=27.6041666666667, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786701, Length=229, Percent_Identity=24.8908296943231, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1786812, Length=238, Percent_Identity=24.7899159663866, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367175, Length=189, Percent_Identity=26.984126984127, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=205, Percent_Identity=30.7317073170732, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=204, Percent_Identity=31.8627450980392, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17567345, Length=191, Percent_Identity=27.2251308900524, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=232, Percent_Identity=28.448275862069, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=215, Percent_Identity=27.906976744186, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=191, Percent_Identity=28.2722513089005, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=234, Percent_Identity=26.4957264957265, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=194, Percent_Identity=27.8350515463918, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=191, Percent_Identity=25.6544502617801, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32563809, Length=213, Percent_Identity=28.6384976525822, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=213, Percent_Identity=28.6384976525822, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=191, Percent_Identity=26.1780104712042, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=197, Percent_Identity=27.9187817258883, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17544670, Length=251, Percent_Identity=26.2948207171315, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=205, Percent_Identity=27.8048780487805, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=189, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25152911, Length=192, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=257, Percent_Identity=33.852140077821, Blast_Score=130, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6322227, Length=194, Percent_Identity=28.3505154639175, Blast_Score=76, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=29.5698924731183, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI281364494, Length=252, Percent_Identity=31.3492063492063, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24663911, Length=247, Percent_Identity=33.1983805668016, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24641232, Length=246, Percent_Identity=28.0487804878049, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI23397609, Length=226, Percent_Identity=34.5132743362832, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI116007234, Length=246, Percent_Identity=30.4878048780488, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24641388, Length=251, Percent_Identity=29.4820717131474, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21357041, Length=187, Percent_Identity=29.9465240641711, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI281364892, Length=194, Percent_Identity=30.9278350515464, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI116007236, Length=246, Percent_Identity=30.0813008130081, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24648944, Length=247, Percent_Identity=29.5546558704453, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28571526, Length=227, Percent_Identity=30.3964757709251, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI21358495, Length=192, Percent_Identity=29.1666666666667, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=31.7460317460317, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24643142, Length=195, Percent_Identity=27.6923076923077, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24648693, Length=252, Percent_Identity=26.984126984127, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21355889, Length=252, Percent_Identity=26.984126984127, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007232, Length=173, Percent_Identity=35.2601156069364, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28571387, Length=243, Percent_Identity=30.0411522633745, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI116007238, Length=202, Percent_Identity=33.6633663366337, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI17737361, Length=233, Percent_Identity=27.8969957081545, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21356301, Length=227, Percent_Identity=29.5154185022026, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24649181, Length=195, Percent_Identity=28.7179487179487, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24640492, Length=191, Percent_Identity=28.2722513089005, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161076933, Length=228, Percent_Identity=28.0701754385965, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24584748, Length=230, Percent_Identity=27.8260869565217, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639444, Length=190, Percent_Identity=28.9473684210526, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24580925, Length=203, Percent_Identity=29.5566502463054, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24640442, Length=195, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24651139, Length=193, Percent_Identity=25.3886010362694, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21355631, Length=173, Percent_Identity=24.8554913294798, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25296; Mature: 25296

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLIVITGASSGIGAAMAQAFSAKGHPLLLLARRVEPMQALGLDNSLAISVDVTDADAM
CCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEHHCCHHHHHCCCCCEEEEEEECCHHHH
KAAIATAEEKFGPVGCLINNAGVMLLGAADVQDPAEWSRMLNINVMGVLNGIHAVLADMK
HHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCHHHHHHHHCEEHHHHHHHHHHHHHHHH
ARKTGTIINVSSIAGRKTFPNHAAYCATKFAVHALTENIREEVAMDDVRMVTIAPGAVET
HCCCCCEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHH
ALLSHTTNEEIKAGYNEWKEFMGGVIEPTAVADAAVFAFEQPQNVCVREIVLAPTRQQP
HHHHCCCCHHHHCCHHHHHHHHCCCCCCHHHHHHHHEEECCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKQLIVITGASSGIGAAMAQAFSAKGHPLLLLARRVEPMQALGLDNSLAISVDVTDADAM
CCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEHHCCHHHHHCCCCCEEEEEEECCHHHH
KAAIATAEEKFGPVGCLINNAGVMLLGAADVQDPAEWSRMLNINVMGVLNGIHAVLADMK
HHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCHHHHHHHHCEEHHHHHHHHHHHHHHHH
ARKTGTIINVSSIAGRKTFPNHAAYCATKFAVHALTENIREEVAMDDVRMVTIAPGAVET
HCCCCCEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHH
ALLSHTTNEEIKAGYNEWKEFMGGVIEPTAVADAAVFAFEQPQNVCVREIVLAPTRQQP
HHHHCCCCHHHHCCHHHHHHHHCCCCCCHHHHHHHHEEECCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA