| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157960374
Identifier: 157960374
GI number: 157960374
Start: 671034
End: 671570
Strand: Reverse
Name: 157960374
Synonym: Spea_0545
Alternate gene names: NA
Gene position: 671570-671034 (Counterclockwise)
Preceding gene: 157960375
Following gene: 157960373
Centisome position: 12.98
GC content: 42.27
Gene sequence:
>537_bases ATGCGCTTTATTTTATTACTCACTAGCTTGCTTAGCCCTATGGCGTTTGCAGCCATTACACCGGATGCTTTACAGCAGGT AAAAGCTGTGCAGTTTAGTAGTAACAAGGTAATAACGGCAGGCTTGCCAACGCAACCTCAATTCAAAGTACTTAAAGATT CTGGTGTAGAACTAGTGATTAACTTAATCCCAAAAGATAATCCTACTGGTTATGCCAATGAAGCAGAGCTAGTTAAACAA GCTGGCATGGACTACGAGCAAATTGATGTGGACTGGAAACAGCCTACTGTTGCAAATGTTCAACAGTTTTTTGCCATAAT GGACGCTAACCAAGACAAAGATATTTTAGTGCACTGCGCAGCCAACTTCCGCGCATCGGCATTTTATTATCTGTATCAGT TAAAACGCGGCCAAAGCGACTCATTGGCTTACCAACAACAAGTCATGGCACCATGGGGAGAGCTTTCAAAAAGCTTAAAA GAGTATCCCCAATGGCAGGTACTTATTGATCAGGTGAAGTCTGACATAGACCAATAG
Upstream 100 bases:
>100_bases GTCTAGGTATTAAGACTAACTATTTGTTCTGCTTCTTGAACTTATGCCTTGTGAGTCACTCTTATACAAGTTGATAATGA GTACACAAAAGGAAACCAAG
Downstream 100 bases:
>100_bases CGCTTGGTTTGCCAAGCTCGCCACCTTCTTCTAAAAAGCGCCTAGATGGGCGTTTTTTTTATGTTAATTGACATTCTCTC TCTTCCTTAATCCACACAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MRFILLLTSLLSPMAFAAITPDALQQVKAVQFSSNKVITAGLPTQPQFKVLKDSGVELVINLIPKDNPTGYANEAELVKQ AGMDYEQIDVDWKQPTVANVQQFFAIMDANQDKDILVHCAANFRASAFYYLYQLKRGQSDSLAYQQQVMAPWGELSKSLK EYPQWQVLIDQVKSDIDQ
Sequences:
>Translated_178_residues MRFILLLTSLLSPMAFAAITPDALQQVKAVQFSSNKVITAGLPTQPQFKVLKDSGVELVINLIPKDNPTGYANEAELVKQ AGMDYEQIDVDWKQPTVANVQQFFAIMDANQDKDILVHCAANFRASAFYYLYQLKRGQSDSLAYQQQVMAPWGELSKSLK EYPQWQVLIDQVKSDIDQ >Mature_178_residues MRFILLLTSLLSPMAFAAITPDALQQVKAVQFSSNKVITAGLPTQPQFKVLKDSGVELVINLIPKDNPTGYANEAELVKQ AGMDYEQIDVDWKQPTVANVQQFFAIMDANQDKDILVHCAANFRASAFYYLYQLKRGQSDSLAYQQQVMAPWGELSKSLK EYPQWQVLIDQVKSDIDQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20048; Mature: 20048
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFILLLTSLLSPMAFAAITPDALQQVKAVQFSSNKVITAGLPTQPQFKVLKDSGVELVI CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHEECCCCEEEEE NLIPKDNPTGYANEAELVKQAGMDYEQIDVDWKQPTVANVQQFFAIMDANQDKDILVHCA EECCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC ANFRASAFYYLYQLKRGQSDSLAYQQQVMAPWGELSKSLKEYPQWQVLIDQVKSDIDQ CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCC >Mature Secondary Structure MRFILLLTSLLSPMAFAAITPDALQQVKAVQFSSNKVITAGLPTQPQFKVLKDSGVELVI CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHEECCCCEEEEE NLIPKDNPTGYANEAELVKQAGMDYEQIDVDWKQPTVANVQQFFAIMDANQDKDILVHCA EECCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC ANFRASAFYYLYQLKRGQSDSLAYQQQVMAPWGELSKSLKEYPQWQVLIDQVKSDIDQ CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA