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The map label for this gene is rbsC [H]

Identifier: 157960345

GI number: 157960345

Start: 630384

End: 631358

Strand: Direct

Name: rbsC [H]

Synonym: Spea_0516

Alternate gene names: 157960345

Gene position: 630384-631358 (Clockwise)

Preceding gene: 157960344

Following gene: 157960346

Centisome position: 12.18

GC content: 50.15

Gene sequence:

>975_bases
ATGAGTCAGTCAATTACAGCGCAGCCATTTTATAAGCGCATCAATAAAGCGTGGTTGATTGAGAACAAGTCTCTCATCGC
CTTGTTTAGTCTTATTTTTGTGGTGTCGTTACTGAGCCCAAACTTTTTAACCGTCGATAACTTACTCAATATTCTGCGTC
AGACTTCAATCAACGCAATTATTGCCGTGGGTATGACTATCGTTATCCTGACCGCTGGTATCGACCTAAGCGTCGGCTCG
GTTTTGGCGTTAAGTGGCGCAATCGTGGCGACCCTCATCGGCATGGATGTGCCTGTGGTTGTGGCTCTACCGGTAGCGTT
AATTGCCGGCGCGGCGTTAGGTGCTATCAGCGGTATTATCGTGGCCAAGGGCAAGGTGCAGGCCTTTATTGCAACGCTTG
TTACCATGACGCTGCTTCGCGGCGTAACTATGGTGTACACCAACGGTCGCCCTGTACCGACAGGCTTTAGTGACACCGCA
GACAGCTTTACCTGGTTAGGTACCGGCTATGTGCTAGGCATTCCTGTGCCAGTGTGGTTGATGGCAATGGTGTTTACTGG
TGCCTGGTATCTACTAAACCATACCCGTTTTGGCCGCTATATTTACGCTGTGGGTGGTAATGAGTCGGCGGCGCGTTTAT
CGGGTATTGCGGTTGATAAAGTTAAGATTGCAGCTTACGCCATTTGTGGCTCTATGGCTGCATTGGCGGGCATTATCGTC
ACGGCGCGCCTGTCTTCGGCGCAGCCAACAGCTGGTATGGGCTACGAGCTAGATGCGATTGCGGCGGTAGTGTTAGGTGG
CACCAGCTTAATGGGTGGCAAGGGGCGTATCATGGGCACTTTAATTGGCGCACTGATTATTGGCTTCTTGAATAACGCCT
TAAACCTGCTCGATGTGTCGTCTTATTATCAGATGATTGCCAAAGCTAGCGTGATCTTGCTTGCGGTACTTATCGACACT
AAACAAAAAGCCTAG

Upstream 100 bases:

>100_bases
TGCATCAGGGCCAGATCAGTGGCGAATTTGATGCAAGCCAAGCAGATCAAGAAGCGATTCTTGCCTGCGCCGTGGGTAAA
ACTTCCAACAAGGATATTGC

Downstream 100 bases:

>100_bases
ACTCTTTATCGGCAGAGCTTAGCTAACACTCTAACTAGAGTGATATGAGTTCTGCCTTTGCATTTACTGTATTGAAAAGG
TTTACCATGAAGCGACTTGC

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSQSITAQPFYKRINKAWLIENKSLIALFSLIFVVSLLSPNFLTVDNLLNILRQTSINAIIAVGMTIVILTAGIDLSVGS
VLALSGAIVATLIGMDVPVVVALPVALIAGAALGAISGIIVAKGKVQAFIATLVTMTLLRGVTMVYTNGRPVPTGFSDTA
DSFTWLGTGYVLGIPVPVWLMAMVFTGAWYLLNHTRFGRYIYAVGGNESAARLSGIAVDKVKIAAYAICGSMAALAGIIV
TARLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKASVILLAVLIDT
KQKA

Sequences:

>Translated_324_residues
MSQSITAQPFYKRINKAWLIENKSLIALFSLIFVVSLLSPNFLTVDNLLNILRQTSINAIIAVGMTIVILTAGIDLSVGS
VLALSGAIVATLIGMDVPVVVALPVALIAGAALGAISGIIVAKGKVQAFIATLVTMTLLRGVTMVYTNGRPVPTGFSDTA
DSFTWLGTGYVLGIPVPVWLMAMVFTGAWYLLNHTRFGRYIYAVGGNESAARLSGIAVDKVKIAAYAICGSMAALAGIIV
TARLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKASVILLAVLIDT
KQKA
>Mature_323_residues
SQSITAQPFYKRINKAWLIENKSLIALFSLIFVVSLLSPNFLTVDNLLNILRQTSINAIIAVGMTIVILTAGIDLSVGSV
LALSGAIVATLIGMDVPVVVALPVALIAGAALGAISGIIVAKGKVQAFIATLVTMTLLRGVTMVYTNGRPVPTGFSDTAD
SFTWLGTGYVLGIPVPVWLMAMVFTGAWYLLNHTRFGRYIYAVGGNESAARLSGIAVDKVKIAAYAICGSMAALAGIIVT
ARLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKASVILLAVLIDTK
QKA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=322, Percent_Identity=68.6335403726708, Blast_Score=426, Evalue=1e-120,
Organism=Escherichia coli, GI1790524, Length=286, Percent_Identity=45.1048951048951, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=38.3647798742138, Blast_Score=191, Evalue=5e-50,
Organism=Escherichia coli, GI145693152, Length=306, Percent_Identity=37.2549019607843, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1789992, Length=343, Percent_Identity=37.9008746355685, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI87082395, Length=286, Percent_Identity=39.1608391608392, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1788471, Length=331, Percent_Identity=36.2537764350453, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI145693214, Length=249, Percent_Identity=40.9638554216867, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=34.6153846153846, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787794, Length=292, Percent_Identity=29.7945205479452, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33742; Mature: 33611

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSITAQPFYKRINKAWLIENKSLIALFSLIFVVSLLSPNFLTVDNLLNILRQTSINAI
CCCCCCCCHHHHHCCHHEEECCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHH
IAVGMTIVILTAGIDLSVGSVLALSGAIVATLIGMDVPVVVALPVALIAGAALGAISGII
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHE
VAKGKVQAFIATLVTMTLLRGVTMVYTNGRPVPTGFSDTADSFTWLGTGYVLGIPVPVWL
EECCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEEECCCEEEECCHHHHH
MAMVFTGAWYLLNHTRFGRYIYAVGGNESAARLSGIAVDKVKIAAYAICGSMAALAGIIV
HHHHHHCHHHHHCCCCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
TARLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVS
HHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SYYQMIAKASVILLAVLIDTKQKA
HHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SQSITAQPFYKRINKAWLIENKSLIALFSLIFVVSLLSPNFLTVDNLLNILRQTSINAI
CCCCCCCHHHHHCCHHEEECCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHH
IAVGMTIVILTAGIDLSVGSVLALSGAIVATLIGMDVPVVVALPVALIAGAALGAISGII
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHE
VAKGKVQAFIATLVTMTLLRGVTMVYTNGRPVPTGFSDTADSFTWLGTGYVLGIPVPVWL
EECCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEEECCCEEEECCHHHHH
MAMVFTGAWYLLNHTRFGRYIYAVGGNESAARLSGIAVDKVKIAAYAICGSMAALAGIIV
HHHHHHCHHHHHCCCCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
TARLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVS
HHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SYYQMIAKASVILLAVLIDTKQKA
HHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]