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The map label for this gene is rbsD [H]

Identifier: 157960343

GI number: 157960343

Start: 628444

End: 628863

Strand: Direct

Name: rbsD [H]

Synonym: Spea_0514

Alternate gene names: 157960343

Gene position: 628444-628863 (Clockwise)

Preceding gene: 157960342

Following gene: 157960344

Centisome position: 12.14

GC content: 48.57

Gene sequence:

>420_bases
ATGAACAAGCACGCTTTACTCAATGCAGATATGAATTACCTTGCAGCAACATTGGGGCATACCGATGAAGTGACTATTTG
TGATGCCGGTTTGCCTATTCCTGCGCAAGTTAAGCGCATCGATCTGGCTCTGACCCATGGCGTACCAAGCTTTATCGCCA
CGGTAAAAGTTTGGCTAGCGACGTCGCAAATCGAAGGCATTGTATTAGCGCAAGAGTTTGCCGATGTTAGCCCTGAGTGC
CATCAAGCACTCCTAGCCGAGATTGAGGCTGAGCAGCAAGCAACTGGCCGAACATTTAGTGTTGAATACATTAGCCATGA
AGCGTTTAAACAGCGCACGGGGCATAGCCGCGCGGTGATCCGCACCGGTGAATGTACCCCTTATGCCAATGTGATCTTTA
AAACCGGTGTTGTATTTTAA

Upstream 100 bases:

>100_bases
TCAAATCTTATCGAAACGTTTCGATCGTTGTTTTACGGCTGAGTGTGCTTTACGCGAGAAATCACTCTGCTCAGAGACAT
GACATTAATTAGGCCTATAG

Downstream 100 bases:

>100_bases
GCTTAGCGGAATCATGTTATGACCCAAGCCATATTGCAGTTACAAGCCATTGAAAAGTCTTTCCCTGGGGTTAAAGCCCT
AGATAAAGCCTGCTTAAATG

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MNKHALLNADMNYLAATLGHTDEVTICDAGLPIPAQVKRIDLALTHGVPSFIATVKVWLATSQIEGIVLAQEFADVSPEC
HQALLAEIEAEQQATGRTFSVEYISHEAFKQRTGHSRAVIRTGECTPYANVIFKTGVVF

Sequences:

>Translated_139_residues
MNKHALLNADMNYLAATLGHTDEVTICDAGLPIPAQVKRIDLALTHGVPSFIATVKVWLATSQIEGIVLAQEFADVSPEC
HQALLAEIEAEQQATGRTFSVEYISHEAFKQRTGHSRAVIRTGECTPYANVIFKTGVVF
>Mature_139_residues
MNKHALLNADMNYLAATLGHTDEVTICDAGLPIPAQVKRIDLALTHGVPSFIATVKVWLATSQIEGIVLAQEFADVSPEC
HQALLAEIEAEQQATGRTFSVEYISHEAFKQRTGHSRAVIRTGECTPYANVIFKTGVVF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose [H]

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=46.7625899280576, Blast_Score=146, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023064
- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 15136; Mature: 15136

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKHALLNADMNYLAATLGHTDEVTICDAGLPIPAQVKRIDLALTHGVPSFIATVKVWLA
CCCCEEEECCHHHHHHHCCCCCCEEEECCCCCCCCHHHEEEEEECCCCHHHHHHHHHHHH
TSQIEGIVLAQEFADVSPECHQALLAEIEAEQQATGRTFSVEYISHEAFKQRTGHSRAVI
HCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCEEEE
RTGECTPYANVIFKTGVVF
ECCCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MNKHALLNADMNYLAATLGHTDEVTICDAGLPIPAQVKRIDLALTHGVPSFIATVKVWLA
CCCCEEEECCHHHHHHHCCCCCCEEEECCCCCCCCHHHEEEEEECCCCHHHHHHHHHHHH
TSQIEGIVLAQEFADVSPECHQALLAEIEAEQQATGRTFSVEYISHEAFKQRTGHSRAVI
HCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCEEEE
RTGECTPYANVIFKTGVVF
ECCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA