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The map label for this gene is nrfC [H]

Identifier: 157960336

GI number: 157960336

Start: 620880

End: 621590

Strand: Direct

Name: nrfC [H]

Synonym: Spea_0507

Alternate gene names: 157960336

Gene position: 620880-621590 (Clockwise)

Preceding gene: 157960335

Following gene: 157960337

Centisome position: 12.0

GC content: 46.13

Gene sequence:

>711_bases
GTGAGTGAAAATATAGAGAGACGGAGGTTCCTTAAATGCTTAGGAGCCAGCTCTTTGATAATAGCGCCCTTAGGGTGTAG
CTCTGTCAAAGAGGGAGAGTCAGATGCAAACAAGCCCCATTATGCGATGGTGTTTGATCAAAATAAATGTACCGGCTGTG
GCGACTGTAAAGAGGCCTGTAATCTAGCTAACAACCTTCCTGAAGGTAAGTCGAGACTGCTGATGGAGCAGCACTCAGGC
GGGCTAGAAGGTCAGCCTTGTCCACACTGTGGCAAAACAACGGAATGTGGCTGTGAGCGTAAGTTTGTCCGCGTGTCATG
CCAACAATGTAAGAATGCTCCTTGTGTTACCGTTTGTCCTACAGGCGCGGCACACCGAGATGAGAAAACTGGCATTGTTA
CTATGGATGCGGCTAAATGTGCCGGTTGTAAGTACTGTATTGCGGCTTGTCCATACGATGCGCGTTTTATTAATAAAGAG
ACCGATGTCGCCGACAACTGTGATTTCTGCTTAAACAGCAAGCTTGCCATTGGTGAGTTACCAGCTTGTGTGCAGAAATG
CCGTTATGATGCACTGATTTTTGGTGATATTAACGATCCGACATCCTATATCAGTAAGTTATTGCGAGTTAAAGACTCTG
TGCGTATTAAGCCAGGGTTTGGTACTGAGCCAAGCTTACGTTACATACCTATTGTGAAGCTAGGAGTATAG

Upstream 100 bases:

>100_bases
AAAAAATAGCTAATCGTTCAGTGGCTGCATCTGAGTAAAGTCACGTAAAACCTAATAAGTATAAATATATCAGCAAAATA
GCTGATAGCTGGAGGATGCT

Downstream 100 bases:

>100_bases
ATATGGACGGCAATATTGAGTTTACAATGGGCTTGTCTCAAGGCCTTGCTTGGCCTTGGCCAATTGCTGTGTACTTGTTC
TTTGCGGGGATCTCCGGTGG

Product: 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSENIERRRFLKCLGASSLIIAPLGCSSVKEGESDANKPHYAMVFDQNKCTGCGDCKEACNLANNLPEGKSRLLMEQHSG
GLEGQPCPHCGKTTECGCERKFVRVSCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIAACPYDARFINKE
TDVADNCDFCLNSKLAIGELPACVQKCRYDALIFGDINDPTSYISKLLRVKDSVRIKPGFGTEPSLRYIPIVKLGV

Sequences:

>Translated_236_residues
MSENIERRRFLKCLGASSLIIAPLGCSSVKEGESDANKPHYAMVFDQNKCTGCGDCKEACNLANNLPEGKSRLLMEQHSG
GLEGQPCPHCGKTTECGCERKFVRVSCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIAACPYDARFINKE
TDVADNCDFCLNSKLAIGELPACVQKCRYDALIFGDINDPTSYISKLLRVKDSVRIKPGFGTEPSLRYIPIVKLGV
>Mature_235_residues
SENIERRRFLKCLGASSLIIAPLGCSSVKEGESDANKPHYAMVFDQNKCTGCGDCKEACNLANNLPEGKSRLLMEQHSGG
LEGQPCPHCGKTTECGCERKFVRVSCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIAACPYDARFINKET
DVADNCDFCLNSKLAIGELPACVQKCRYDALIFGDINDPTSYISKLLRVKDSVRIKPGFGTEPSLRYIPIVKLGV

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=226, Percent_Identity=42.4778761061947, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI226510944, Length=197, Percent_Identity=40.6091370558376, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI1787872, Length=196, Percent_Identity=32.1428571428571, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1787122, Length=196, Percent_Identity=31.1224489795918, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789370, Length=225, Percent_Identity=28.4444444444444, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1787749, Length=168, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790326, Length=164, Percent_Identity=27.4390243902439, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787963, Length=179, Percent_Identity=29.0502793296089, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787740, Length=96, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787478, Length=96, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI2367245, Length=158, Percent_Identity=29.1139240506329, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788811, Length=158, Percent_Identity=29.746835443038, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789067, Length=171, Percent_Identity=30.9941520467836, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25618; Mature: 25487

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
11.0 %Cys+Met (Translated Protein)
9.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
10.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENIERRRFLKCLGASSLIIAPLGCSSVKEGESDANKPHYAMVFDQNKCTGCGDCKEAC
CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHH
NLANNLPEGKSRLLMEQHSGGLEGQPCPHCGKTTECGCERKFVRVSCQQCKNAPCVTVCP
HHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECC
TGAAHRDEKTGIVTMDAAKCAGCKYCIAACPYDARFINKETDVADNCDFCLNSKLAIGEL
CCCCCCCCCCCEEEECCHHHCCCCEEEEECCCCHHHCCCCCCCCCCCCHHHCCCCCCCHH
PACVQKCRYDALIFGDINDPTSYISKLLRVKDSVRIKPGFGTEPSLRYIPIVKLGV
HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCEEECCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
SENIERRRFLKCLGASSLIIAPLGCSSVKEGESDANKPHYAMVFDQNKCTGCGDCKEAC
CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHH
NLANNLPEGKSRLLMEQHSGGLEGQPCPHCGKTTECGCERKFVRVSCQQCKNAPCVTVCP
HHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECC
TGAAHRDEKTGIVTMDAAKCAGCKYCIAACPYDARFINKETDVADNCDFCLNSKLAIGEL
CCCCCCCCCCCEEEECCHHHCCCCEEEEECCCCHHHCCCCCCCCCCCCHHHCCCCCCCHH
PACVQKCRYDALIFGDINDPTSYISKLLRVKDSVRIKPGFGTEPSLRYIPIVKLGV
HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCEEECCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]