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The map label for this gene is nrfF [H]

Identifier: 157960335

GI number: 157960335

Start: 620104

End: 620817

Strand: Direct

Name: nrfF [H]

Synonym: Spea_0506

Alternate gene names: 157960335

Gene position: 620104-620817 (Clockwise)

Preceding gene: 157960334

Following gene: 157960336

Centisome position: 11.98

GC content: 41.04

Gene sequence:

>714_bases
ATGAATAGTTTAGCTATCGGCATTGCTGTCACCTTATGTGCAGTTATCACCCTAATTTGGCGTCATCATCACTCTAGTCA
AAAGCATGGTGTAACCCTGATAGTTAAGCCTTTCGATGATGGAATTGATGAGCACTCTGTCAACATTAAGGTACCTACGG
TGCTATCTGTAGTGCTCTTTACAACGACACTATTAATTTACGTACAATTAGGCCATTTCAATGGTTGGAATAAAGGAGTA
GTCGACACAAATATTGATTACCTGATCACCGCAGAAATCAATAGAAATGCAAAAAAAGTCAATGAACAACCTAATAATGA
AATTGCATTATTAAATTTGGCTCAATCCTATGTGGATGGCGGCCTGTATAGCGAATCGGTTCAAACCTTCGATACCTTAC
TCAAGCTCACGGGCGATGATGCCAACATTATTGGCATGAAAGCTAATGCCATGTATTACCGCGACAACAGAGAGATGAGT
TTAGACATTGACTTAGTTATCGCCAGAGCCTTAGCACTCGACGAATACGAACCGCAATCTCGTTTATTACTTGCTACCCA
CGCTTACCTTAGCGGCGAGTTTGAAAAGGCCATCGAGCAATGGCAGAAACTACTCGAAAGCAAACAGCCAAACGTTAACC
GAGCTGCAATTAATAATGCAATTTTAAGAGCCGAGCAAAAAATAGCTAATCGTTCAGTGGCTGCATCTGAGTAA

Upstream 100 bases:

>100_bases
GGCGGCGGTCACTAATCGCTGCTGCTAGCAAATTAATTTAGCTAGTGTTTATTAAGTTTTAAGTTGTTGTTTTAGTAAGT
TTCGTTTGTAGAGAGTCACT

Downstream 100 bases:

>100_bases
AGTCACGTAAAACCTAATAAGTATAAATATATCAGCAAAATAGCTGATAGCTGGAGGATGCTGTGAGTGAAAATATAGAG
AGACGGAGGTTCCTTAAATG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNSLAIGIAVTLCAVITLIWRHHHSSQKHGVTLIVKPFDDGIDEHSVNIKVPTVLSVVLFTTTLLIYVQLGHFNGWNKGV
VDTNIDYLITAEINRNAKKVNEQPNNEIALLNLAQSYVDGGLYSESVQTFDTLLKLTGDDANIIGMKANAMYYRDNREMS
LDIDLVIARALALDEYEPQSRLLLATHAYLSGEFEKAIEQWQKLLESKQPNVNRAAINNAILRAEQKIANRSVAASE

Sequences:

>Translated_237_residues
MNSLAIGIAVTLCAVITLIWRHHHSSQKHGVTLIVKPFDDGIDEHSVNIKVPTVLSVVLFTTTLLIYVQLGHFNGWNKGV
VDTNIDYLITAEINRNAKKVNEQPNNEIALLNLAQSYVDGGLYSESVQTFDTLLKLTGDDANIIGMKANAMYYRDNREMS
LDIDLVIARALALDEYEPQSRLLLATHAYLSGEFEKAIEQWQKLLESKQPNVNRAAINNAILRAEQKIANRSVAASE
>Mature_237_residues
MNSLAIGIAVTLCAVITLIWRHHHSSQKHGVTLIVKPFDDGIDEHSVNIKVPTVLSVVLFTTTLLIYVQLGHFNGWNKGV
VDTNIDYLITAEINRNAKKVNEQPNNEIALLNLAQSYVDGGLYSESVQTFDTLLKLTGDDANIIGMKANAMYYRDNREMS
LDIDLVIARALALDEYEPQSRLLLATHAYLSGEFEKAIEQWQKLLESKQPNVNRAAINNAILRAEQKIANRSVAASE

Specific function: Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1790513, Length=123, Percent_Identity=30.8943089430894, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR017565
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 26400; Mature: 26400

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLAIGIAVTLCAVITLIWRHHHSSQKHGVTLIVKPFDDGIDEHSVNIKVPTVLSVVLF
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHH
TTTLLIYVQLGHFNGWNKGVVDTNIDYLITAEINRNAKKVNEQPNNEIALLNLAQSYVDG
HHHHHHHHHCCCCCCCCCCCEECCCCEEEEEECCCCHHHHCCCCCCCEEEEEHHHHHHCC
GLYSESVQTFDTLLKLTGDDANIIGMKANAMYYRDNREMSLDIDLVIARALALDEYEPQS
CCHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCEEEHHHHHHHHHHHHCCCCCCC
RLLLATHAYLSGEFEKAIEQWQKLLESKQPNVNRAAINNAILRAEQKIANRSVAASE
CEEEEEHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNSLAIGIAVTLCAVITLIWRHHHSSQKHGVTLIVKPFDDGIDEHSVNIKVPTVLSVVLF
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHH
TTTLLIYVQLGHFNGWNKGVVDTNIDYLITAEINRNAKKVNEQPNNEIALLNLAQSYVDG
HHHHHHHHHCCCCCCCCCCCEECCCCEEEEEECCCCHHHHCCCCCCCEEEEEHHHHHHCC
GLYSESVQTFDTLLKLTGDDANIIGMKANAMYYRDNREMSLDIDLVIARALALDEYEPQS
CCHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCEEEHHHHHHHHHHHHCCCCCCC
RLLLATHAYLSGEFEKAIEQWQKLLESKQPNVNRAAINNAILRAEQKIANRSVAASE
CEEEEEHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]