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The map label for this gene is ccmF [H]

Identifier: 157960307

GI number: 157960307

Start: 587512

End: 589494

Strand: Reverse

Name: ccmF [H]

Synonym: Spea_0478

Alternate gene names: 157960307

Gene position: 589494-587512 (Counterclockwise)

Preceding gene: 157960319

Following gene: 157960306

Centisome position: 11.39

GC content: 47.76

Gene sequence:

>1983_bases
ATGATCCCAGAGCTAGGACTTATTTTCCTTATCATTAGCACAGTCACGGCGGTGTTACTTGCGTTTATTCCGCTCTATGC
GTCATATACTAAAAACCATTACTTATTTAGTTATGTAAAAACATTAACCGCATTAATGACGGTGACCATTAGCGCTTCTA
TATTATGTTTACTTGTTTCGTTTTTACTCGATGACTTCTCGGTGGCTTATGTAGCCAACCACTCTAATACTCAGCTAGCG
ATCCTATATAAGGTGGCTGCGGTTTGGGGTAGCCATGAAGGCTCGATGCTGTTTTGGGTAGTGTCTATCGCAATTTGGGG
CTGCTTGATTGTATTCTCGTCGCGCTATCAAGACCCACTATTTATCGGCCGCATGATCGCCATACTGGCGTTTGTGATTG
CAGGCTTTAACCTGTTTATGCTGTTCACTTCAAACCCTTTTGCCCGCTTGCTCCCCAACTTCCCAATCGAGGGGCGCGAC
CTTAACCCGATTTTACAAGACATAGGCTTGATCTTTCATCCACCCATGCTATTCCTCGGCTATGTTGGCCTGACAGTCAC
TTTTGCCGCCGCGATTGCAGCGCTACTTGGTGGCAAGTTTACTCAACAACATGCTGGCTACCTGCGCCCTTGGGTACTTA
TGGCTTGGGTATTTTTAACTGGCGGCAATGCCTTTGGTTCTTGGTGGGCTTATAACGAACTTGGTTGGGGAGGATGGTGG
TTCTGGGATCCGGTGGAAAACGCCTCGTTTATTCCCTGGCTTGTGGCAACCGCGCTATTACATAGCGTTGTTCTGAGTCA
GCAGCGTAGCAGTTTTAAGATCACTACCCTATTGCTGTGTTTACTGGCATTCTCATTGAGCTTATTAGGCACCTTCTTAG
TGCGATCTGGAATCGTGCAGTCTGTACACGCCTTTGCTTCAGACCCTACTCGCGGCATGTCGATTCTATTCCTATTGGGT
GTTTTTGTGTGTGGCGCCTTAACCCTGTTTGCCTTAAAGGCTCATTTGATTAAGTCTAAATCTGACTTTGCCCTCGTCTC
ACGAGATAGCGTGATGTTGCTCGGCAACATCGTCTTAATCGTGGCCGCTATCTCTGTGCTACTCGGTACCTTCTATCCAC
TGTTATTCGAACTATTGAATCTAGGAACCCTATCGGTTGGCGCGCCCTACTTTAACAGCATCTTCGTGCCACTGACCTTT
GTTGCCGTACTATTGATGGGCGCCGCACCTTTGATTAAATGTCAGCAATCTAGTCATCGTTTATACCTTCTTGCAGGCCT
ATTCGCCGCAGCGGCAAGCATTGGCGTATTGGTTGCACTACAAACCCGTGGTGGTTTCAACCCTTGGGTATGGATGGGTG
CTACTTCAGCTAGCTGGATATTACTAACTCTTGGCTACTTAATGTTTAACCTACGCCAGCAAGGATTAGCCGTTATCGCT
AACAAGTCGGCCATGTTGATCGCTCACCTTGGTGTGGCTGTCACAATTATCGGCGCTACAGCCGTATCCAACTTTGAAAC
GGAGGAGTTACTCAGAATGGGGCCGGGTCAAGGCAAGGTCGTGGCTGGCTACACCTTCGTCTATGAAGATACTGTCGATG
TTGAATCAAGCAGCTACACCGCGATTCAGGCTAATATTCGCGTGACCGATGTGGATGATAAGTTTATTGGCTATATCACC
CCGCAAAGACAAACCTTTAAGACTAACGCCATGGAGACGACTCAAGCGGGCATCATGCGTAATTTAGTGCGGGATCTGTA
TGTATCGAGCGGCCAGCAACTGAGTGAAACCGAATACCTAGTACGTATTAGCCATAAGCCGCTTGCTTGCTGGATTTGGA
TTGGTGGCCTAATGATGATGCTAGGTGGTTTTATTGCCGCGATGTCAGGGCTTTATAGCTTGCGTCAGCAACGCACTGCT
GTTGATTCATCTGTCGCGACGACGCAATACGCAAATACATACAGCGCCAAGGAGCTAGCATGA

Upstream 100 bases:

>100_bases
AAGTTCAATATCAACAATAGTAAAAAGCTAAATTATAAAGAATAGTTTTCATACAGGCTTTTTGAACTTATAAACGTAAA
CGAATAGAGAAGTTAATAAG

Downstream 100 bases:

>100_bases
GCAACTCGTACACGTCGACGCTAATGCGCTTATTGGCAGCCTTTGCCATCTTGCTGTGCCTAAGCCTTTCCGCGCAGGCG
GCCAGCGACAAAATCCATTA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 660; Mature: 660

Protein sequence:

>660_residues
MIPELGLIFLIISTVTAVLLAFIPLYASYTKNHYLFSYVKTLTALMTVTISASILCLLVSFLLDDFSVAYVANHSNTQLA
ILYKVAAVWGSHEGSMLFWVVSIAIWGCLIVFSSRYQDPLFIGRMIAILAFVIAGFNLFMLFTSNPFARLLPNFPIEGRD
LNPILQDIGLIFHPPMLFLGYVGLTVTFAAAIAALLGGKFTQQHAGYLRPWVLMAWVFLTGGNAFGSWWAYNELGWGGWW
FWDPVENASFIPWLVATALLHSVVLSQQRSSFKITTLLLCLLAFSLSLLGTFLVRSGIVQSVHAFASDPTRGMSILFLLG
VFVCGALTLFALKAHLIKSKSDFALVSRDSVMLLGNIVLIVAAISVLLGTFYPLLFELLNLGTLSVGAPYFNSIFVPLTF
VAVLLMGAAPLIKCQQSSHRLYLLAGLFAAAASIGVLVALQTRGGFNPWVWMGATSASWILLTLGYLMFNLRQQGLAVIA
NKSAMLIAHLGVAVTIIGATAVSNFETEELLRMGPGQGKVVAGYTFVYEDTVDVESSSYTAIQANIRVTDVDDKFIGYIT
PQRQTFKTNAMETTQAGIMRNLVRDLYVSSGQQLSETEYLVRISHKPLACWIWIGGLMMMLGGFIAAMSGLYSLRQQRTA
VDSSVATTQYANTYSAKELA

Sequences:

>Translated_660_residues
MIPELGLIFLIISTVTAVLLAFIPLYASYTKNHYLFSYVKTLTALMTVTISASILCLLVSFLLDDFSVAYVANHSNTQLA
ILYKVAAVWGSHEGSMLFWVVSIAIWGCLIVFSSRYQDPLFIGRMIAILAFVIAGFNLFMLFTSNPFARLLPNFPIEGRD
LNPILQDIGLIFHPPMLFLGYVGLTVTFAAAIAALLGGKFTQQHAGYLRPWVLMAWVFLTGGNAFGSWWAYNELGWGGWW
FWDPVENASFIPWLVATALLHSVVLSQQRSSFKITTLLLCLLAFSLSLLGTFLVRSGIVQSVHAFASDPTRGMSILFLLG
VFVCGALTLFALKAHLIKSKSDFALVSRDSVMLLGNIVLIVAAISVLLGTFYPLLFELLNLGTLSVGAPYFNSIFVPLTF
VAVLLMGAAPLIKCQQSSHRLYLLAGLFAAAASIGVLVALQTRGGFNPWVWMGATSASWILLTLGYLMFNLRQQGLAVIA
NKSAMLIAHLGVAVTIIGATAVSNFETEELLRMGPGQGKVVAGYTFVYEDTVDVESSSYTAIQANIRVTDVDDKFIGYIT
PQRQTFKTNAMETTQAGIMRNLVRDLYVSSGQQLSETEYLVRISHKPLACWIWIGGLMMMLGGFIAAMSGLYSLRQQRTA
VDSSVATTQYANTYSAKELA
>Mature_660_residues
MIPELGLIFLIISTVTAVLLAFIPLYASYTKNHYLFSYVKTLTALMTVTISASILCLLVSFLLDDFSVAYVANHSNTQLA
ILYKVAAVWGSHEGSMLFWVVSIAIWGCLIVFSSRYQDPLFIGRMIAILAFVIAGFNLFMLFTSNPFARLLPNFPIEGRD
LNPILQDIGLIFHPPMLFLGYVGLTVTFAAAIAALLGGKFTQQHAGYLRPWVLMAWVFLTGGNAFGSWWAYNELGWGGWW
FWDPVENASFIPWLVATALLHSVVLSQQRSSFKITTLLLCLLAFSLSLLGTFLVRSGIVQSVHAFASDPTRGMSILFLLG
VFVCGALTLFALKAHLIKSKSDFALVSRDSVMLLGNIVLIVAAISVLLGTFYPLLFELLNLGTLSVGAPYFNSIFVPLTF
VAVLLMGAAPLIKCQQSSHRLYLLAGLFAAAASIGVLVALQTRGGFNPWVWMGATSASWILLTLGYLMFNLRQQGLAVIA
NKSAMLIAHLGVAVTIIGATAVSNFETEELLRMGPGQGKVVAGYTFVYEDTVDVESSSYTAIQANIRVTDVDDKFIGYIT
PQRQTFKTNAMETTQAGIMRNLVRDLYVSSGQQLSETEYLVRISHKPLACWIWIGGLMMMLGGFIAAMSGLYSLRQQRTA
VDSSVATTQYANTYSAKELA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=650, Percent_Identity=43.5384615384615, Blast_Score=496, Evalue=1e-141,
Organism=Escherichia coli, GI1790511, Length=575, Percent_Identity=36.1739130434783, Blast_Score=301, Evalue=6e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72220; Mature: 72220

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGLIFLIISTVTAVLLAFIPLYASYTKNHYLFSYVKTLTALMTVTISASILCLLVS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLLDDFSVAYVANHSNTQLAILYKVAAVWGSHEGSMLFWVVSIAIWGCLIVFSSRYQDPL
HHHCCCCEEEEEECCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
FIGRMIAILAFVIAGFNLFMLFTSNPFARLLPNFPIEGRDLNPILQDIGLIFHPPMLFLG
HHHHHHHHHHHHHHCHHEEEEECCCCHHHHCCCCCCCCCCCCHHHHHCHHHHCCHHHHHH
YVGLTVTFAAAIAALLGGKFTQQHAGYLRPWVLMAWVFLTGGNAFGSWWAYNELGWGGWW
HHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
FWDPVENASFIPWLVATALLHSVVLSQQRSSFKITTLLLCLLAFSLSLLGTFLVRSGIVQ
EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVHAFASDPTRGMSILFLLGVFVCGALTLFALKAHLIKSKSDFALVSRDSVMLLGNIVLI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
VAAISVLLGTFYPLLFELLNLGTLSVGAPYFNSIFVPLTFVAVLLMGAAPLIKCQQSSHR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCE
LYLLAGLFAAAASIGVLVALQTRGGFNPWVWMGATSASWILLTLGYLMFNLRQQGLAVIA
EEHHHHHHHHHHHHHEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEE
NKSAMLIAHLGVAVTIIGATAVSNFETEELLRMGPGQGKVVAGYTFVYEDTVDVESSSYT
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEE
AIQANIRVTDVDDKFIGYITPQRQTFKTNAMETTQAGIMRNLVRDLYVSSGQQLSETEYL
EEEEEEEEEECCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
VRISHKPLACWIWIGGLMMMLGGFIAAMSGLYSLRQQRTAVDSSVATTQYANTYSAKELA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCC
>Mature Secondary Structure
MIPELGLIFLIISTVTAVLLAFIPLYASYTKNHYLFSYVKTLTALMTVTISASILCLLVS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLLDDFSVAYVANHSNTQLAILYKVAAVWGSHEGSMLFWVVSIAIWGCLIVFSSRYQDPL
HHHCCCCEEEEEECCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
FIGRMIAILAFVIAGFNLFMLFTSNPFARLLPNFPIEGRDLNPILQDIGLIFHPPMLFLG
HHHHHHHHHHHHHHCHHEEEEECCCCHHHHCCCCCCCCCCCCHHHHHCHHHHCCHHHHHH
YVGLTVTFAAAIAALLGGKFTQQHAGYLRPWVLMAWVFLTGGNAFGSWWAYNELGWGGWW
HHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
FWDPVENASFIPWLVATALLHSVVLSQQRSSFKITTLLLCLLAFSLSLLGTFLVRSGIVQ
EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVHAFASDPTRGMSILFLLGVFVCGALTLFALKAHLIKSKSDFALVSRDSVMLLGNIVLI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
VAAISVLLGTFYPLLFELLNLGTLSVGAPYFNSIFVPLTFVAVLLMGAAPLIKCQQSSHR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCE
LYLLAGLFAAAASIGVLVALQTRGGFNPWVWMGATSASWILLTLGYLMFNLRQQGLAVIA
EEHHHHHHHHHHHHHEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEE
NKSAMLIAHLGVAVTIIGATAVSNFETEELLRMGPGQGKVVAGYTFVYEDTVDVESSSYT
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEE
AIQANIRVTDVDDKFIGYITPQRQTFKTNAMETTQAGIMRNLVRDLYVSSGQQLSETEYL
EEEEEEEEEECCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
VRISHKPLACWIWIGGLMMMLGGFIAAMSGLYSLRQQRTAVDSSVATTQYANTYSAKELA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]