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The map label for this gene is ccmH [H]

Identifier: 157960306

GI number: 157960306

Start: 587069

End: 587515

Strand: Reverse

Name: ccmH [H]

Synonym: Spea_0477

Alternate gene names: 157960306

Gene position: 587515-587069 (Counterclockwise)

Preceding gene: 157960307

Following gene: 157960305

Centisome position: 11.35

GC content: 46.98

Gene sequence:

>447_bases
ATGAGCAACTCGTACACGTCGACGCTAATGCGCTTATTGGCAGCCTTTGCCATCTTGCTGTGCCTAAGCCTTTCCGCGCA
GGCGGCCAGCGACAAAATCCATTACACCCCAGACCAGATCCGCGATTTAGGATTTGAAATCGCCCATGAGCTACGCTGCC
CTATGTCGGTCAATCAGAATCTGTTTGACTCAGGTGCGCCTATCGCCAGCGAGCTTAAGGGACAGATATTTTTGATGCTA
GATCAGGGTGAATCCAAAGCTGAGATCATCGATTTTTTAGTACAACGCTATGGCGAGAAAATCAGATATCAACCTAGCTT
TTCGGCCGCTACCGCCCTGCTTTGGTTTGGACCATTGCTTCTTCTATTTGGCATTATTGCTTTCGCGGTGATTTGGATCC
GTGAACAACGTAAACATCAAGATATTAAGGCTAATACCTATGAATAA

Upstream 100 bases:

>100_bases
CGATGTCAGGGCTTTATAGCTTGCGTCAGCAACGCACTGCTGTTGATTCATCTGTCGCGACGACGCAATACGCAAATACA
TACAGCGCCAAGGAGCTAGC

Downstream 100 bases:

>100_bases
AACACATTTACTGAGCGGCTTATTGGTTCTCTCATCTCTACTTATGCCAGCCCAAGCTCAAGTTGCATCAACCAAGGTGT
ACAACACAGGCAAAGCCATT

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MSNSYTSTLMRLLAAFAILLCLSLSAQAASDKIHYTPDQIRDLGFEIAHELRCPMSVNQNLFDSGAPIASELKGQIFLML
DQGESKAEIIDFLVQRYGEKIRYQPSFSAATALLWFGPLLLLFGIIAFAVIWIREQRKHQDIKANTYE

Sequences:

>Translated_148_residues
MSNSYTSTLMRLLAAFAILLCLSLSAQAASDKIHYTPDQIRDLGFEIAHELRCPMSVNQNLFDSGAPIASELKGQIFLML
DQGESKAEIIDFLVQRYGEKIRYQPSFSAATALLWFGPLLLLFGIIAFAVIWIREQRKHQDIKANTYE
>Mature_147_residues
SNSYTSTLMRLLAAFAILLCLSLSAQAASDKIHYTPDQIRDLGFEIAHELRCPMSVNQNLFDSGAPIASELKGQIFLMLD
QGESKAEIIDFLVQRYGEKIRYQPSFSAATALLWFGPLLLLFGIIAFAVIWIREQRKHQDIKANTYE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=112, Percent_Identity=34.8214285714286, Blast_Score=76, Evalue=8e-16,
Organism=Escherichia coli, GI1790512, Length=68, Percent_Identity=39.7058823529412, Blast_Score=70, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16702; Mature: 16570

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSYTSTLMRLLAAFAILLCLSLSAQAASDKIHYTPDQIRDLGFEIAHELRCPMSVNQN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
LFDSGAPIASELKGQIFLMLDQGESKAEIIDFLVQRYGEKIRYQPSFSAATALLWFGPLL
HHCCCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LLFGIIAFAVIWIREQRKHQDIKANTYE
HHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SNSYTSTLMRLLAAFAILLCLSLSAQAASDKIHYTPDQIRDLGFEIAHELRCPMSVNQN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
LFDSGAPIASELKGQIFLMLDQGESKAEIIDFLVQRYGEKIRYQPSFSAATALLWFGPLL
HHCCCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LLFGIIAFAVIWIREQRKHQDIKANTYE
HHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA