| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157960290
Identifier: 157960290
GI number: 157960290
Start: 569440
End: 570192
Strand: Reverse
Name: 157960290
Synonym: Spea_0461
Alternate gene names: NA
Gene position: 570192-569440 (Counterclockwise)
Preceding gene: 157960295
Following gene: 157960288
Centisome position: 11.02
GC content: 42.9
Gene sequence:
>753_bases ATGAACAAAAAATTACTATGTTTAGCTTTGCTAGTCAGCCCGACTGCAATGGCAGATAATATGGTTAACTGGTGGGATGT GAGTGTCACTGGCTTATATGGTGAAAATTACGATTTAGCACCTTCAGATAAACAAACAGCAGTTACCTTTGAAACCGCTG GTGATTGGAAATATGGCGACTGGTTTGCGTTTCAGGACGTGACTTATTTCAATGGCTCAAACGGCGGTAAAGACAATAGC ACCTATGGCGAAATCTCAACTCGCTTCAGTGCAGGTAAAATATTAGGTAAAACCGTAGGTTTTGGCCCAGTTACCGATCT ATCGCTAGCACTGGCTTTAGAAGAAGGTGAAGGCCCAGTCGAGAGTTTCCTATACGGTGTCGGTATGGATATTAAGATCC CATACTTTAGCTACTTCCAGCTAAACACTTACCGTAGACACGCGATGGGCAGTGACAACATCAGTGACGGCTGGCAGTTA ACACCATCATTTAGAATGGACTTCCCAGTTGGCAATTCAAATATCGTATTCGATGGTTACATTGACTGGGTATTTGCCAC AGATGAAGCGAGTTATGAGACTAACTTCCACTTCAACCCACAGCTTAAGTATGACTTAGGTGCTGTCGTGCTAGGCGACC AGCAGAAGAATAAGCTATTTGTTGGTATCGAATACGATTACTGGAAAAACAAATATGGCGTAGATGGTATGGACCAAAAC ACCTATTCGGTGATCGCTAAATACCATTTCTAG
Upstream 100 bases:
>100_bases TGCGCCTATATTCCCCGCCAGCAAAATAACGATTAAATGCCTATAGGTATAATTCCAATTTACTGTACCTAGAGGTCTCA TAAAAATAAAAGGTTTTACG
Downstream 100 bases:
>100_bases AATCGGTTTCGATTCCAATGAAAAAGGCGCTTATAGCGCCTTTTTTTATTGAACAGAACTCAAGTGAAATTGGTTATGCT AGTAGCTTCTTAGCTGCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 250; Mature: 250
Protein sequence:
>250_residues MNKKLLCLALLVSPTAMADNMVNWWDVSVTGLYGENYDLAPSDKQTAVTFETAGDWKYGDWFAFQDVTYFNGSNGGKDNS TYGEISTRFSAGKILGKTVGFGPVTDLSLALALEEGEGPVESFLYGVGMDIKIPYFSYFQLNTYRRHAMGSDNISDGWQL TPSFRMDFPVGNSNIVFDGYIDWVFATDEASYETNFHFNPQLKYDLGAVVLGDQQKNKLFVGIEYDYWKNKYGVDGMDQN TYSVIAKYHF
Sequences:
>Translated_250_residues MNKKLLCLALLVSPTAMADNMVNWWDVSVTGLYGENYDLAPSDKQTAVTFETAGDWKYGDWFAFQDVTYFNGSNGGKDNS TYGEISTRFSAGKILGKTVGFGPVTDLSLALALEEGEGPVESFLYGVGMDIKIPYFSYFQLNTYRRHAMGSDNISDGWQL TPSFRMDFPVGNSNIVFDGYIDWVFATDEASYETNFHFNPQLKYDLGAVVLGDQQKNKLFVGIEYDYWKNKYGVDGMDQN TYSVIAKYHF >Mature_250_residues MNKKLLCLALLVSPTAMADNMVNWWDVSVTGLYGENYDLAPSDKQTAVTFETAGDWKYGDWFAFQDVTYFNGSNGGKDNS TYGEISTRFSAGKILGKTVGFGPVTDLSLALALEEGEGPVESFLYGVGMDIKIPYFSYFQLNTYRRHAMGSDNISDGWQL TPSFRMDFPVGNSNIVFDGYIDWVFATDEASYETNFHFNPQLKYDLGAVVLGDQQKNKLFVGIEYDYWKNKYGVDGMDQN TYSVIAKYHF
Specific function: Unknown
COG id: COG3248
COG function: function code M; Nucleoside-binding outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28141; Mature: 28141
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKLLCLALLVSPTAMADNMVNWWDVSVTGLYGENYDLAPSDKQTAVTFETAGDWKYGD CCCCEEEEEEECCCHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCC WFAFQDVTYFNGSNGGKDNSTYGEISTRFSAGKILGKTVGFGPVTDLSLALALEEGEGPV EEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCHH ESFLYGVGMDIKIPYFSYFQLNTYRRHAMGSDNISDGWQLTPSFRMDFPVGNSNIVFDGY HHHHHHCCCEEECCEEEEEEEECHHHHCCCCCCCCCCEEECCCEEEECCCCCCCEEEEEE IDWVFATDEASYETNFHFNPQLKYDLGAVVLGDQQKNKLFVGIEYDYWKNKYGVDGMDQN EEEEEEECCCCCCCCEEECCEEEEECCEEEECCCCCCEEEEEEEEHHCCCCCCCCCCCCC TYSVIAKYHF CEEEEEEECC >Mature Secondary Structure MNKKLLCLALLVSPTAMADNMVNWWDVSVTGLYGENYDLAPSDKQTAVTFETAGDWKYGD CCCCEEEEEEECCCHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCC WFAFQDVTYFNGSNGGKDNSTYGEISTRFSAGKILGKTVGFGPVTDLSLALALEEGEGPV EEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCHH ESFLYGVGMDIKIPYFSYFQLNTYRRHAMGSDNISDGWQLTPSFRMDFPVGNSNIVFDGY HHHHHHCCCEEECCEEEEEEEECHHHHCCCCCCCCCCEEECCCEEEECCCCCCCEEEEEE IDWVFATDEASYETNFHFNPQLKYDLGAVVLGDQQKNKLFVGIEYDYWKNKYGVDGMDQN EEEEEEECCCCCCCCEEECCEEEEECCEEEECCCCCCEEEEEEEEHHCCCCCCCCCCCCC TYSVIAKYHF CEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA