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The map label for this gene is tapC [H]

Identifier: 157960241

GI number: 157960241

Start: 503951

End: 505219

Strand: Reverse

Name: tapC [H]

Synonym: Spea_0412

Alternate gene names: 157960241

Gene position: 505219-503951 (Counterclockwise)

Preceding gene: 157960242

Following gene: 157960240

Centisome position: 9.76

GC content: 46.41

Gene sequence:

>1269_bases
ATGGCGACGGCAACAATTAAACCTAAAAAGACTCGCGCCAAGAAAACGAAAAACCAATCAAAAGTCCTCACCTTCGAGTG
GAAAGGCACCAATCGAGATGGCACAAAAACTTCTGGTGAACTCAGGGGCGTCTCTAGCGCAGAAATACGCGCTCAATTAA
AGAGCCAAGGGGTAAACCCTAAGTCAGTAAAAAAACAATCTGCTCCCCTGTTTAAACTAGGGGACGCCAAAATTAAACCC
ATGGATATAGCCATGGTCACTCGTCAGATAGCGACCATGCTTGCGGCAGGCGTGCCTCTAGTCACCACAATAGAGCTGCT
TGGCCGTGGTCATGAAAAAGCCAAGATGCGAGAACTGTTAGCAACTATTCTTGCCGAGATTCAATCTGGTATTCCATTAT
CTGATGCGCTCAGACCTCACAGACAATATTTCGATGATCTCTATGTGGATCTTGTTGCAGCAGGCGAACACTCAGGATCC
CTCGATACCGTATTTGATCGTATAGCGACCTATAGAGAAAAATCAGAAGCTCTAAAGTCGAAAATTAAGAAGGCGATGTT
CTACCCAGCAGCCGTTGTTATCGTTGCTATCTTGGTTACCTCTCTTTTATTACTGTTCGTCGTGCCGCAGTTTGAAGAGA
TTTTTAAAGGCTTTGGCGCTGAGCTTCCACCTTTTACCCAATTCGTATTGAAAATTTCAAGGGGGCTTGAACACTCTTGG
TATTTTTTTGTACTTGCTATTGGTCTAGCTATCTTTGCCTTTAAGAAAGCGCATCTAGGCTCGCAACACTTTAGAGATCA
GGTTGACACCTTTGTTTTAAAAATCCCCGCCATTGGCCCCATTCTGCATAAAGGTGCCATGGCCCGCTTCGCTCGCACAT
TAGCAACTACCTTTGCCGCTGGTGTTCCCTTAATCGATGGCCTAGAGTCCGCAGCGGGCGCATCGGGTAACGCAGTGTAT
CGTAAGGCCATATTTAAAATCCGCACCGAAGTGATGTCGGGAATGCAGATGAATGTAGCCATGCGCACCACGGGACTGTT
TCCCGATATGCTGATCCAGATGGTGATGATCGGCGAAGAGTCGGGCTCACTCGATAATATGCTCAATAAAGTGGCAAACA
TTTATGAGATGCAGGTGGATGATGCCGTAGATGGCTTATCAAGTCTGATAGAACCGATTATGATGGTGGTTATCGGCACC
GTGGTTGGTGGTCTAATTGTCGCCATGTACTTACCCATCTTCCAGATGGGTAAAGTTGTAGGCGGTTAA

Upstream 100 bases:

>100_bases
GTCATCCAAGGCGTCACCAGTATTGCAGAAATAAACCGCGTCACTAGCTTTTAATATCCCCAACTTTAACTACTGCACCT
AAATATCAAAAGGATACGTT

Downstream 100 bases:

>100_bases
TTCCAGTATAAAATTCAAATTTAAGAAAAATAATGACTGAACTAATTTCTGTTTTTAGCCAGAATCCTTGGCTTTTTATC
GCGTTAAGCTTTGTGTTTGC

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MATATIKPKKTRAKKTKNQSKVLTFEWKGTNRDGTKTSGELRGVSSAEIRAQLKSQGVNPKSVKKQSAPLFKLGDAKIKP
MDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLATILAEIQSGIPLSDALRPHRQYFDDLYVDLVAAGEHSGS
LDTVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPPFTQFVLKISRGLEHSW
YFFVLAIGLAIFAFKKAHLGSQHFRDQVDTFVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVY
RKAIFKIRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
VVGGLIVAMYLPIFQMGKVVGG

Sequences:

>Translated_422_residues
MATATIKPKKTRAKKTKNQSKVLTFEWKGTNRDGTKTSGELRGVSSAEIRAQLKSQGVNPKSVKKQSAPLFKLGDAKIKP
MDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLATILAEIQSGIPLSDALRPHRQYFDDLYVDLVAAGEHSGS
LDTVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPPFTQFVLKISRGLEHSW
YFFVLAIGLAIFAFKKAHLGSQHFRDQVDTFVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVY
RKAIFKIRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
VVGGLIVAMYLPIFQMGKVVGG
>Mature_421_residues
ATATIKPKKTRAKKTKNQSKVLTFEWKGTNRDGTKTSGELRGVSSAEIRAQLKSQGVNPKSVKKQSAPLFKLGDAKIKPM
DIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLATILAEIQSGIPLSDALRPHRQYFDDLYVDLVAAGEHSGSL
DTVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPPFTQFVLKISRGLEHSWY
FFVLAIGLAIFAFKKAHLGSQHFRDQVDTFVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYR
KAIFKIRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGTV
VGGLIVAMYLPIFQMGKVVGG

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=404, Percent_Identity=27.2277227722772, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1786295, Length=398, Percent_Identity=28.894472361809, Blast_Score=180, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 45999; Mature: 45868

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATATIKPKKTRAKKTKNQSKVLTFEWKGTNRDGTKTSGELRGVSSAEIRAQLKSQGVNP
CCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCH
KSVKKQSAPLFKLGDAKIKPMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELL
HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
ATILAEIQSGIPLSDALRPHRQYFDDLYVDLVAAGEHSGSLDTVFDRIATYREKSEALKS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
KIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPPFTQFVLKISRGLEHSW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHH
YFFVLAIGLAIFAFKKAHLGSQHFRDQVDTFVLKIPAIGPILHKGAMARFARTLATTFAA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GVPLIDGLESAAGASGNAVYRKAIFKIRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEE
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCC
SGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKVV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GG
CC
>Mature Secondary Structure 
ATATIKPKKTRAKKTKNQSKVLTFEWKGTNRDGTKTSGELRGVSSAEIRAQLKSQGVNP
CCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCH
KSVKKQSAPLFKLGDAKIKPMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELL
HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
ATILAEIQSGIPLSDALRPHRQYFDDLYVDLVAAGEHSGSLDTVFDRIATYREKSEALKS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
KIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPPFTQFVLKISRGLEHSW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHH
YFFVLAIGLAIFAFKKAHLGSQHFRDQVDTFVLKIPAIGPILHKGAMARFARTLATTFAA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GVPLIDGLESAAGASGNAVYRKAIFKIRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEE
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCC
SGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKVV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]