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The map label for this gene is bepC [H]

Identifier: 157960194

GI number: 157960194

Start: 420786

End: 422213

Strand: Reverse

Name: bepC [H]

Synonym: Spea_0365

Alternate gene names: 157960194

Gene position: 422213-420786 (Counterclockwise)

Preceding gene: 157960195

Following gene: 157960193

Centisome position: 8.16

GC content: 47.62

Gene sequence:

>1428_bases
ATGGATAGCAGCACAGTACGGCAGCTAAAGCGCAGTGCATTAGCACTTGCCGTTAGCGCGCTGATGATACCAGCTACAGT
TTCTAGCCAAACGCTAGAGCAAGCTGTAGCACACACACTGGATACAAATCCCGAAATCCGGATTGCATTTAACCGCTTTA
AGGCTCGTGAAGAGCAGGTAAATCAAGCGGTAGCGGGCTATATGCCAACGGTTGATATCAGTGCTGGCTATGGTTGGGAG
CAGACTAACAGCCCATCGACTCGTCGACGTGCTCCTAATGGTGTTGGCCAAGGCGACGTTGATGATGATGGCGTGATAGA
ACTAGAACGTGGTGAGGCGGGTTTTAGTATCAAACAGATGCTTTTCGATGGTTTCCACACTAGCAGCGAAGTCGACAGAT
ACAGCTTCGAAGCCAGCGCCGAACAGTGGGCATTATTTGCCGCCGCCGAAGATATGGCGCTAGATGTTGCAAAAGTTTAC
ATCAATTATATTCGCAGTGAACAGGTTCTCACCTTGGCAGAGAAGAATCTTCAAAGTCATAAAGATATCTACGAGCAAAT
TAAGCAGCGTACCGACTCAGGCCTAGGCTCTACTGCCGATCTTTCGCAAATTACCGGTCGTTTAGCGCGTGCTAACGCCA
ATGTAATCTCCGCACGCAATAACTTCTACGATGCCAAATCTCAATTTGTTCGCATCGTTGAGCAACAACCAGAAGACATG
ATAGTGCCAGTGCCTGACGCAGACATGCTTCCAGCCGATCTCAGCAGTAGCGTCATGATGGCCCAAGATAACCATCCGAT
TCTTAAATCAGCCGCGAGCGACATCTACGCCGCCGAGAATGAGAAAGACTCGGCGCAATCCAATTATTATCCAAAGGTTA
CCTTAGAGCTAGATGGTAACTGGAATAATAACCTCGATGGTGAAGATGGTTATTCCGCTTTGGCGAGTAATAATGTTGGT
GGCCATAATAATGATCTAGTTGCTATGGTGCGCTTAAAGTACAACCTATTTGCCGGTGGTCGCGATCTGGCTCGTGAAAA
AGAAGCCGCCTATAAAGTTGGCGAAGCTAAAGAGATCCGTCAACGTGCCCACAGACAGGTTGTTGAAGGCGTCAACTTAG
CTTGGAACGCCTACGAGCTTCTCACTCCGCAAAAAATGTACATTCGCGACCATGTTGTTGCAGCTAAAGATACCCAAGTT
GCCTATAGCCAGCAGTTCAATTTAGGTCAGCGTACCCTACTGGATCTACTCGATACTGAAAATGAGCTTTTTGAAGCCAG
AAAAGATTATTTAGAGTCTGAGTATGATGAAATTATCGCTCAATACCGCGTATTAAATGCCACCGGGCAACTGCTCGATT
CACTGCGCGTGACTAGACCCGATGTCTGGAATGGAGAGAGAGATTACGAAGGAGGAGTCCCACAATGA

Upstream 100 bases:

>100_bases
TCCGTTTTAGAGTACATACTTAATCCGATATTGCGGGCTAAAGATACGGCGCTTAGAGAGCGCTAAACCCGATATAAAAA
ACAACCAGGAGGGGTTATAC

Downstream 100 bases:

>100_bases
AAATCATACTAGTTCTATTAAGTCTCGCGATTTTAGGTGGCTGCTCAATGCGTGATATTGCCACCATGGATGAGCCAACG
GTACAGGTTAACGATCTAAG

Product: TolC family type I secretion outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MDSSTVRQLKRSALALAVSALMIPATVSSQTLEQAVAHTLDTNPEIRIAFNRFKAREEQVNQAVAGYMPTVDISAGYGWE
QTNSPSTRRRAPNGVGQGDVDDDGVIELERGEAGFSIKQMLFDGFHTSSEVDRYSFEASAEQWALFAAAEDMALDVAKVY
INYIRSEQVLTLAEKNLQSHKDIYEQIKQRTDSGLGSTADLSQITGRLARANANVISARNNFYDAKSQFVRIVEQQPEDM
IVPVPDADMLPADLSSSVMMAQDNHPILKSAASDIYAAENEKDSAQSNYYPKVTLELDGNWNNNLDGEDGYSALASNNVG
GHNNDLVAMVRLKYNLFAGGRDLAREKEAAYKVGEAKEIRQRAHRQVVEGVNLAWNAYELLTPQKMYIRDHVVAAKDTQV
AYSQQFNLGQRTLLDLLDTENELFEARKDYLESEYDEIIAQYRVLNATGQLLDSLRVTRPDVWNGERDYEGGVPQ

Sequences:

>Translated_475_residues
MDSSTVRQLKRSALALAVSALMIPATVSSQTLEQAVAHTLDTNPEIRIAFNRFKAREEQVNQAVAGYMPTVDISAGYGWE
QTNSPSTRRRAPNGVGQGDVDDDGVIELERGEAGFSIKQMLFDGFHTSSEVDRYSFEASAEQWALFAAAEDMALDVAKVY
INYIRSEQVLTLAEKNLQSHKDIYEQIKQRTDSGLGSTADLSQITGRLARANANVISARNNFYDAKSQFVRIVEQQPEDM
IVPVPDADMLPADLSSSVMMAQDNHPILKSAASDIYAAENEKDSAQSNYYPKVTLELDGNWNNNLDGEDGYSALASNNVG
GHNNDLVAMVRLKYNLFAGGRDLAREKEAAYKVGEAKEIRQRAHRQVVEGVNLAWNAYELLTPQKMYIRDHVVAAKDTQV
AYSQQFNLGQRTLLDLLDTENELFEARKDYLESEYDEIIAQYRVLNATGQLLDSLRVTRPDVWNGERDYEGGVPQ
>Mature_475_residues
MDSSTVRQLKRSALALAVSALMIPATVSSQTLEQAVAHTLDTNPEIRIAFNRFKAREEQVNQAVAGYMPTVDISAGYGWE
QTNSPSTRRRAPNGVGQGDVDDDGVIELERGEAGFSIKQMLFDGFHTSSEVDRYSFEASAEQWALFAAAEDMALDVAKVY
INYIRSEQVLTLAEKNLQSHKDIYEQIKQRTDSGLGSTADLSQITGRLARANANVISARNNFYDAKSQFVRIVEQQPEDM
IVPVPDADMLPADLSSSVMMAQDNHPILKSAASDIYAAENEKDSAQSNYYPKVTLELDGNWNNNLDGEDGYSALASNNVG
GHNNDLVAMVRLKYNLFAGGRDLAREKEAAYKVGEAKEIRQRAHRQVVEGVNLAWNAYELLTPQKMYIRDHVVAAKDTQV
AYSQQFNLGQRTLLDLLDTENELFEARKDYLESEYDEIIAQYRVLNATGQLLDSLRVTRPDVWNGERDYEGGVPQ

Specific function: Involved in the efflux of toxic and relatively hydrophobic compounds. Influences survival inside the host [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI87082199, Length=419, Percent_Identity=23.1503579952267, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 52912; Mature: 52912

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSSTVRQLKRSALALAVSALMIPATVSSQTLEQAVAHTLDTNPEIRIAFNRFKAREEQV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH
NQAVAGYMPTVDISAGYGWEQTNSPSTRRRAPNGVGQGDVDDDGVIELERGEAGFSIKQM
HHHHHCCCCEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
LFDGFHTSSEVDRYSFEASAEQWALFAAAEDMALDVAKVYINYIRSEQVLTLAEKNLQSH
HHHCCCCCCHHHHHCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
KDIYEQIKQRTDSGLGSTADLSQITGRLARANANVISARNNFYDAKSQFVRIVEQQPEDM
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCC
IVPVPDADMLPADLSSSVMMAQDNHPILKSAASDIYAAENEKDSAQSNYYPKVTLELDGN
EEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHCCCCCEEEEEECCC
WNNNLDGEDGYSALASNNVGGHNNDLVAMVRLKYNLFAGGRDLAREKEAAYKVGEAKEIR
CCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEHHCCCCHHHHHHHHHHHHCCCHHHHH
QRAHRQVVEGVNLAWNAYELLTPQKMYIRDHVVAAKDTQVAYSQQFNLGQRTLLDLLDTE
HHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHEEECCCCHHHHHHHCCCHHHHHHHHHCCH
NELFEARKDYLESEYDEIIAQYRVLNATGQLLDSLRVTRPDVWNGERDYEGGVPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDSSTVRQLKRSALALAVSALMIPATVSSQTLEQAVAHTLDTNPEIRIAFNRFKAREEQV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH
NQAVAGYMPTVDISAGYGWEQTNSPSTRRRAPNGVGQGDVDDDGVIELERGEAGFSIKQM
HHHHHCCCCEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
LFDGFHTSSEVDRYSFEASAEQWALFAAAEDMALDVAKVYINYIRSEQVLTLAEKNLQSH
HHHCCCCCCHHHHHCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
KDIYEQIKQRTDSGLGSTADLSQITGRLARANANVISARNNFYDAKSQFVRIVEQQPEDM
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCC
IVPVPDADMLPADLSSSVMMAQDNHPILKSAASDIYAAENEKDSAQSNYYPKVTLELDGN
EEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHCCCCCEEEEEECCC
WNNNLDGEDGYSALASNNVGGHNNDLVAMVRLKYNLFAGGRDLAREKEAAYKVGEAKEIR
CCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEHHCCCCHHHHHHHHHHHHCCCHHHHH
QRAHRQVVEGVNLAWNAYELLTPQKMYIRDHVVAAKDTQVAYSQQFNLGQRTLLDLLDTE
HHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHEEECCCCHHHHHHHCCCHHHHHHHHHCCH
NELFEARKDYLESEYDEIIAQYRVLNATGQLLDSLRVTRPDVWNGERDYEGGVPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]