Click here to switch to the map view.

The map label for this gene is yraM [H]

Identifier: 157960081

GI number: 157960081

Start: 280449

End: 282323

Strand: Reverse

Name: yraM [H]

Synonym: Spea_0252

Alternate gene names: 157960081

Gene position: 282323-280449 (Counterclockwise)

Preceding gene: 157960083

Following gene: 157960080

Centisome position: 5.46

GC content: 47.31

Gene sequence:

>1875_bases
GTGTTAAAAAGACTGAATACAACAAAATTTATCTCTATCGCAATTTTATCTGCGGTTTTGTTCGGTTGCGGCACGACTTC
TGCGCCGGTAAAGACTGAAAAGACTGAAGTTTCTTTATCGTCGGTGACCAAGCCGTCATCACAATACTTGGCATTAGCTG
CCAACGAAAAAAATAAAGAAACTCAGGATAAGTATGTTTTACTCGCCGCCCATGCCTTTATCAATGAAGGTAATGCCAGC
GCCGCCGATAAAGCATTGAAGTCTATTGCGCAAGATATCAGTCAAAAGCCTGAGTTACTGGCCGAGCATATTTACCTTTC
GGCTCGCGTGCTAGAGATGACCTCTACCTATGATCATGCTCTGCAGGTGCTCAAATATCCAAGCAACTGGAAACTACCTA
ACTGGCAATGGGTCAGCTACTACCAGTTCAAGGCGCACCTATACCAGCAAGTTAACCAGCCAATCGATCAGGTTAGACAG
CTCAGTTTACTCAGTCAGTATCTACCAGCCGCCGAAGCCCATGAGGTCAATGACACTATTTGGCGCTCTCTGCAGCAGAT
TAACGAACAGACACTACTTAGCTTTAGCGACGATAGATCAAACCCTATTTTTGCTGGCTGGGTTCAGCTTGCCTACATAG
CTAAACACTACGCCGTTGACCCTAACGACCTGGTGCGCCACTTAGGCAGCTGGCAACAGCTCAATCCAAATCACCCTGCT
GCGGCAAAATTGCCAACAGATTTAGAAAAGGCGCTCAATACCCAGCCTTACCAACCGAAAAATATCGCTGTATTACTGCC
ATTAACAGGTTCGCGCGCCGTTGTCGCTAACACCGTAAAACAAGGTATTCTTGCTAACTATATGGCAATGGGCGATGACG
ATGTGACGCTTAACTTTTTCGATACAGCGACCGGAGCTCAAGCCGCTTACCAGCAAGCTGTTGCTGCGGGTGCAGAGTTT
ATAATTGGTCCGTTACTGCAGTCTGAGGTCGAGCAGTTACAAAGTATGACGCCGACAGCTGAAACAGTGTCTGCAACTAG
CCCTTCAGCGCCTATCGCACCGATTGCCAATAAAACGATTCCACAGTTGTTTTTAAACCATATCGATAGCTTTACCGCAG
ATCCTGATAAGTTCTTCTTTGCTCTGTCTCCAACCGATGAGGCTATCGATGCCGCTCAGCGCCTATACAATGATGGTATT
AAGCAGCCTTTGTTACTAGTGAGCAACGATGCTGTTGGCCACCGCATGGCTGATAGCTTTGATAACGCTTGGCAAAAACT
AACCAATAACGCTGCCGAAATTCACTACTATGACGGCGGCGATAAGATGAAAGTCACGGTGCAAAAGGCTCTAGGGGTTA
TCGACAGTAAGGAACGTATTGCCCGCATCAAAGCGATTCTAACGCCTAAAATTGAGGCCGACTTCCGTTCACGCCGTGAT
ATTGATGCGATTTATATGATCTCTGCCAGCCAAGATTTAGTGCTGCTTAAACCCTTTATCGATGTTAACTTCAGTGTATT
CGCCGATCCGGTTCCGCTCTACACCACCAGCCGTAGCCGAGTAGAAGGCAACAGCCGCAATACCGCTGAAGAGCTAAATA
ACCTCACCATCAGCGATATACCTTGGTTACTGACGCCGAACACCGAAACTCAAATGGTTAACGAGCTATGGCCAAGCTGG
AGCAATAGCCGCAAAAGACTATTTATTATGGGCTATGATGCGCTGGATTTAGTGGGTAAACTGGCTCAGATGCGCGCCTT
ACCTGGCTATCAGTTTTCAGGTCGTAGCGGAATGTTATCGGTGCAACCTGACGGCACATTAAACCGTCAACTCAGCTGGG
GTCGCTACCAGAGAGGTAACTTACGTCCGCTATAA

Upstream 100 bases:

>100_bases
CTACCTCTATGTTGAGTGTTGGCAAGAGTTTCTAACAATACTTTCGCCAAGGGGAAGAGCAGGTTAAACTATTAGCAGCA
TCTTACCAGAGTGAAGACCC

Downstream 100 bases:

>100_bases
AGCAGATGCCCCCTGAGGTCAGCAAGATTTACAGGTAAATTCGCACAGAAAAGCAGTCTAGGTTATTGCTTTAGGATATA
GTCAAATTGACGCCACAGGG

Product: LppC family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 624; Mature: 624

Protein sequence:

>624_residues
MLKRLNTTKFISIAILSAVLFGCGTTSAPVKTEKTEVSLSSVTKPSSQYLALAANEKNKETQDKYVLLAAHAFINEGNAS
AADKALKSIAQDISQKPELLAEHIYLSARVLEMTSTYDHALQVLKYPSNWKLPNWQWVSYYQFKAHLYQQVNQPIDQVRQ
LSLLSQYLPAAEAHEVNDTIWRSLQQINEQTLLSFSDDRSNPIFAGWVQLAYIAKHYAVDPNDLVRHLGSWQQLNPNHPA
AAKLPTDLEKALNTQPYQPKNIAVLLPLTGSRAVVANTVKQGILANYMAMGDDDVTLNFFDTATGAQAAYQQAVAAGAEF
IIGPLLQSEVEQLQSMTPTAETVSATSPSAPIAPIANKTIPQLFLNHIDSFTADPDKFFFALSPTDEAIDAAQRLYNDGI
KQPLLLVSNDAVGHRMADSFDNAWQKLTNNAAEIHYYDGGDKMKVTVQKALGVIDSKERIARIKAILTPKIEADFRSRRD
IDAIYMISASQDLVLLKPFIDVNFSVFADPVPLYTTSRSRVEGNSRNTAEELNNLTISDIPWLLTPNTETQMVNELWPSW
SNSRKRLFIMGYDALDLVGKLAQMRALPGYQFSGRSGMLSVQPDGTLNRQLSWGRYQRGNLRPL

Sequences:

>Translated_624_residues
MLKRLNTTKFISIAILSAVLFGCGTTSAPVKTEKTEVSLSSVTKPSSQYLALAANEKNKETQDKYVLLAAHAFINEGNAS
AADKALKSIAQDISQKPELLAEHIYLSARVLEMTSTYDHALQVLKYPSNWKLPNWQWVSYYQFKAHLYQQVNQPIDQVRQ
LSLLSQYLPAAEAHEVNDTIWRSLQQINEQTLLSFSDDRSNPIFAGWVQLAYIAKHYAVDPNDLVRHLGSWQQLNPNHPA
AAKLPTDLEKALNTQPYQPKNIAVLLPLTGSRAVVANTVKQGILANYMAMGDDDVTLNFFDTATGAQAAYQQAVAAGAEF
IIGPLLQSEVEQLQSMTPTAETVSATSPSAPIAPIANKTIPQLFLNHIDSFTADPDKFFFALSPTDEAIDAAQRLYNDGI
KQPLLLVSNDAVGHRMADSFDNAWQKLTNNAAEIHYYDGGDKMKVTVQKALGVIDSKERIARIKAILTPKIEADFRSRRD
IDAIYMISASQDLVLLKPFIDVNFSVFADPVPLYTTSRSRVEGNSRNTAEELNNLTISDIPWLLTPNTETQMVNELWPSW
SNSRKRLFIMGYDALDLVGKLAQMRALPGYQFSGRSGMLSVQPDGTLNRQLSWGRYQRGNLRPL
>Mature_624_residues
MLKRLNTTKFISIAILSAVLFGCGTTSAPVKTEKTEVSLSSVTKPSSQYLALAANEKNKETQDKYVLLAAHAFINEGNAS
AADKALKSIAQDISQKPELLAEHIYLSARVLEMTSTYDHALQVLKYPSNWKLPNWQWVSYYQFKAHLYQQVNQPIDQVRQ
LSLLSQYLPAAEAHEVNDTIWRSLQQINEQTLLSFSDDRSNPIFAGWVQLAYIAKHYAVDPNDLVRHLGSWQQLNPNHPA
AAKLPTDLEKALNTQPYQPKNIAVLLPLTGSRAVVANTVKQGILANYMAMGDDDVTLNFFDTATGAQAAYQQAVAAGAEF
IIGPLLQSEVEQLQSMTPTAETVSATSPSAPIAPIANKTIPQLFLNHIDSFTADPDKFFFALSPTDEAIDAAQRLYNDGI
KQPLLLVSNDAVGHRMADSFDNAWQKLTNNAAEIHYYDGGDKMKVTVQKALGVIDSKERIARIKAILTPKIEADFRSRRD
IDAIYMISASQDLVLLKPFIDVNFSVFADPVPLYTTSRSRVEGNSRNTAEELNNLTISDIPWLLTPNTETQMVNELWPSW
SNSRKRLFIMGYDALDLVGKLAQMRALPGYQFSGRSGMLSVQPDGTLNRQLSWGRYQRGNLRPL

Specific function: Unknown

COG id: COG3107

COG function: function code R; Putative lipoprotein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1655 [H]

Homologues:

Organism=Escherichia coli, GI1789537, Length=691, Percent_Identity=23.7337192474674, Blast_Score=170, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007443 [H]

Pfam domain/function: PF04348 LppC [H]

EC number: NA

Molecular weight: Translated: 69379; Mature: 69379

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRLNTTKFISIAILSAVLFGCGTTSAPVKTEKTEVSLSSVTKPSSQYLALAANEKNKE
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHCCCCCCCEEEEEECCCCCC
TQDKYVLLAAHAFINEGNASAADKALKSIAQDISQKPELLAEHIYLSARVLEMTSTYDHA
CCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
LQVLKYPSNWKLPNWQWVSYYQFKAHLYQQVNQPIDQVRQLSLLSQYLPAAEAHEVNDTI
HHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHH
WRSLQQINEQTLLSFSDDRSNPIFAGWVQLAYIAKHYAVDPNDLVRHLGSWQQLNPNHPA
HHHHHHHCHHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCC
AAKLPTDLEKALNTQPYQPKNIAVLLPLTGSRAVVANTVKQGILANYMAMGDDDVTLNFF
CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE
DTATGAQAAYQQAVAAGAEFIIGPLLQSEVEQLQSMTPTAETVSATSPSAPIAPIANKTI
CCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCHH
PQLFLNHIDSFTADPDKFFFALSPTDEAIDAAQRLYNDGIKQPLLLVSNDAVGHRMADSF
HHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
DNAWQKLTNNAAEIHYYDGGDKMKVTVQKALGVIDSKERIARIKAILTPKIEADFRSRRD
HHHHHHHCCCCEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHCCCC
IDAIYMISASQDLVLLKPFIDVNFSVFADPVPLYTTSRSRVEGNSRNTAEELNNLTISDI
CCEEEEEECCCCEEEEECCCCCCCEEEECCCCEEECCCHHCCCCCCCCHHHHCCCEECCC
PWLLTPNTETQMVNELWPSWSNSRKRLFIMGYDALDLVGKLAQMRALPGYQFSGRSGMLS
CEEECCCCHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEE
VQPDGTLNRQLSWGRYQRGNLRPL
ECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKRLNTTKFISIAILSAVLFGCGTTSAPVKTEKTEVSLSSVTKPSSQYLALAANEKNKE
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHCCCCCCCEEEEEECCCCCC
TQDKYVLLAAHAFINEGNASAADKALKSIAQDISQKPELLAEHIYLSARVLEMTSTYDHA
CCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
LQVLKYPSNWKLPNWQWVSYYQFKAHLYQQVNQPIDQVRQLSLLSQYLPAAEAHEVNDTI
HHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHH
WRSLQQINEQTLLSFSDDRSNPIFAGWVQLAYIAKHYAVDPNDLVRHLGSWQQLNPNHPA
HHHHHHHCHHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCC
AAKLPTDLEKALNTQPYQPKNIAVLLPLTGSRAVVANTVKQGILANYMAMGDDDVTLNFF
CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE
DTATGAQAAYQQAVAAGAEFIIGPLLQSEVEQLQSMTPTAETVSATSPSAPIAPIANKTI
CCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCHH
PQLFLNHIDSFTADPDKFFFALSPTDEAIDAAQRLYNDGIKQPLLLVSNDAVGHRMADSF
HHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
DNAWQKLTNNAAEIHYYDGGDKMKVTVQKALGVIDSKERIARIKAILTPKIEADFRSRRD
HHHHHHHCCCCEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHCCCC
IDAIYMISASQDLVLLKPFIDVNFSVFADPVPLYTTSRSRVEGNSRNTAEELNNLTISDI
CCEEEEEECCCCEEEEECCCCCCCEEEECCCCEEECCCHHCCCCCCCCHHHHCCCEECCC
PWLLTPNTETQMVNELWPSWSNSRKRLFIMGYDALDLVGKLAQMRALPGYQFSGRSGMLS
CEEECCCCHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEE
VQPDGTLNRQLSWGRYQRGNLRPL
ECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]