| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157960065
Identifier: 157960065
GI number: 157960065
Start: 266645
End: 267163
Strand: Direct
Name: 157960065
Synonym: Spea_0236
Alternate gene names: NA
Gene position: 266645-267163 (Clockwise)
Preceding gene: 157960064
Following gene: 157960066
Centisome position: 5.15
GC content: 44.12
Gene sequence:
>519_bases ATGATGAAACTGCTACCACTTTTAATGCTAAGTGTTTTACTTACAGGCTGTATTGGGGATAAAAGCGATCTGGAGCTGTT TGTTACTACAACCAAAGCTCAGCATGTTGCTCATATTCCGCCGTTAAAGGAGACACCGAAATTTGAGCACTTTGCCTATC AAGCCGATTTAATGAGAAGTCCTTATGTGCCGCCTTCAAGAGAGTTGACTGAAGAGGTTATCGATACCACTAAAGATTGC CTACAACCCGATTTAAAGCGCCGTAAAGGCCGGCTCGAGACTTATGCGTTAGATAATTTGCGTATGCGAGGCACCCTGAG CGAACGAGATGATATTTGGGCTCTACTTGAGACGACCGATGGCAGTGTTTACCGTTTAGGTGTAGGCCAATACTTGGGTC TTTATCATGGCAAAATAGCGAAAGTAACTCCGCAAACTGTCGAAATAATAGAATTAATCCCAGATGGATCCGGCTGCTGG ACTGAACGCAACAGCAGTATGGAATTAACGGGAGAATAA
Upstream 100 bases:
>100_bases GAAATGATTCTGGTGAGCTTGGCATGGATATTCTGGCTAAAACTTACCGATTTAAAGAGGGTGCCGAATTACCAGCAAAG GGGAAGAAGGGGGCGGTAAG
Downstream 100 bases:
>100_bases TAAGAGATGACTGAGGGAATAATGAGATCTTTAACCACGCCAAAAGCCAGCTTTAAGGTAATGCCTTTAGTTAAGGTCAT TATTGGTTTCGTATTAATCG
Product: pilus assembly protein PilP
Products: NA
Alternate protein names: Pilus Assembly Protein PilQ; Type IV Pilus Biogenesis Protein PilP; Type 4 Fimbrial Biogenesis Protein PilP; Tfp Pilus Assembly Protein PilP; Type IV Pilus Assembly Protein PilP; Fimbrial Assembly Protein; Fimbrial Assembly Protein PilP; Lipoprotein; Pilus Assembly Protein; Type IV Pilus Assembly Protein Pilp; Type IV Pilus Assembly; Fimbriae Biogenesis-Related Fusion Protein; Type 4 Fimbrial Biogenesis Protein; Pili Assembly Protein PilP; Methyl-Accepting Chemotaxis Sensory Transducer; Type IV Pilus Assembly Protein
Number of amino acids: Translated: 172; Mature: 172
Protein sequence:
>172_residues MMKLLPLLMLSVLLTGCIGDKSDLELFVTTTKAQHVAHIPPLKETPKFEHFAYQADLMRSPYVPPSRELTEEVIDTTKDC LQPDLKRRKGRLETYALDNLRMRGTLSERDDIWALLETTDGSVYRLGVGQYLGLYHGKIAKVTPQTVEIIELIPDGSGCW TERNSSMELTGE
Sequences:
>Translated_172_residues MMKLLPLLMLSVLLTGCIGDKSDLELFVTTTKAQHVAHIPPLKETPKFEHFAYQADLMRSPYVPPSRELTEEVIDTTKDC LQPDLKRRKGRLETYALDNLRMRGTLSERDDIWALLETTDGSVYRLGVGQYLGLYHGKIAKVTPQTVEIIELIPDGSGCW TERNSSMELTGE >Mature_172_residues MMKLLPLLMLSVLLTGCIGDKSDLELFVTTTKAQHVAHIPPLKETPKFEHFAYQADLMRSPYVPPSRELTEEVIDTTKDC LQPDLKRRKGRLETYALDNLRMRGTLSERDDIWALLETTDGSVYRLGVGQYLGLYHGKIAKVTPQTVEIIELIPDGSGCW TERNSSMELTGE
Specific function: Unknown
COG id: COG3168
COG function: function code NU; Tfp pilus assembly protein PilP
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19424; Mature: 19424
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKLLPLLMLSVLLTGCIGDKSDLELFVTTTKAQHVAHIPPLKETPKFEHFAYQADLMRS CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCHHHHHHHHHHHCC PYVPPSRELTEEVIDTTKDCLQPDLKRRKGRLETYALDNLRMRGTLSERDDIWALLETTD CCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCEEEECCEEEECCCCCCCCEEEEEECCC GSVYRLGVGQYLGLYHGKIAKVTPQTVEIIELIPDGSGCWTERNSSMELTGE CCEEEECHHHHHHHHCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEEECCC >Mature Secondary Structure MMKLLPLLMLSVLLTGCIGDKSDLELFVTTTKAQHVAHIPPLKETPKFEHFAYQADLMRS CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCHHHHHHHHHHHCC PYVPPSRELTEEVIDTTKDCLQPDLKRRKGRLETYALDNLRMRGTLSERDDIWALLETTD CCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCEEEECCEEEECCCCCCCCEEEEEECCC GSVYRLGVGQYLGLYHGKIAKVTPQTVEIIELIPDGSGCWTERNSSMELTGE CCEEEECHHHHHHHHCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA